Sign in

Basile Beaud Benyahia

@babebe.bsky.social
1.6K followers 583 following 99 posts

Microbiologist in Simonetta Gribaldo’s lab at Institut Pasteur. Love membranes, evolution and bacteria that never want to grow the way i want them to 🥲✨🔮

PostsRepliesMedia
Reposted by Basile Beaud Benyahia
Simonetta Gribaldo @sgribaldo.bsky.social · 23/09/2026
Interested in #archaea, #methane, #cell-envelopes? New paper out @nature.com ! We discovered an enzyme that specifically cleaves the cell wall of methanogens, revealing a new chemical structure of archaeal peptidoglycan, 50 yrs after its first description www.nature.com/articles/s41... #MicroSky 🧵👇
nature.com
1512578
Reposted by Basile Beaud Benyahia
Nika Pende @nikapende.bsky.social · 23/09/2026
So happy to see this paper finally out 🥳 it took only seven years after the first purification of archaeal peptidoglycan 🤣 Congrats to all the people involved 🥂🍾 And here is the story behind the paper: communities.springernature.com/posts/cracki...
communities.springernature.com
Cracking the Archaeal Cell Wall: How a hydrolase overturned a 50-year-old paradigm
Using bioinformatics, biochemistry, NMR, as well as the newly characterized enzyme ArmA from methanogenic archaea, we revised the existing knowledge on archaeal peptidoglycan structure. At the same ti...
95218
Reposted by Basile Beaud Benyahia
David Bikard @dbikard.bsky.social · 21/09/2026
New paper from the lab, out in Nature Microbiology. We ran CRISPRi screens to ask what genes E. coli needs in order to live in a gut and what this can tell us about the gut environment itself. doi.org/10.1038/s41564-026-02471-8
311156
Reposted by Basile Beaud Benyahia
Anthony Vecchiarelli @cellforganized.bsky.social · 19/09/2026
Applications are now being accepted for the 2027 Bacterial Cell Biology & Development GRC, June 6–11! GRS will be on June 5-6, 2027 We’ll likely be oversubscribed, so please apply early!
26638
Reposted by Basile Beaud Benyahia
Alejandro Manzano Marín @amanzanom.bsky.social · 18/09/2026
Please help spread the word! I'm searching for a #PhD student to join my group to work on #Symbiont - #pathogen interactions in #Hemiptera. Fully-funded, 4 years *Full details 👇🏼 besymblab.univie.ac.at/wp-content/u... 🧵 on the project 👇🏼 bsky.app/profile/aman... #ScienceJobs #SymbioSky #MicroSky
0916
Reposted by Basile Beaud Benyahia
Tanmay Bharat @tbharat-lab.bsky.social · 23/08/2026
Molecular architecture of colossal surface layers from hyperthermophilic archaea Led by @idocaspy.bsky.social (Ido) In collaboration with @mkrupovic.bsky.social and @vikramalva.bsky.social labs doi.org/10.64898/202...
215450
Reposted by Basile Beaud Benyahia
STCmicrobeblog @stcmicrobeblog.bsky.social · 18/09/2026
the "Mg²⁺ problem" has been known for a long time. For example, in the standard "rich medium" LB (see👇). now we get to know more about the reasons! #MicroSky
smallthingsconsidered.blog
The Lim­i­ta­tions of LB Medium
by Hiroshi Nikaido — LB medium, also known incorrectly as Luria-Bertani medium, is widely used to grow bacterial cultures, mainly because it is easy to prepare and provides a broad base of nutrien…
15515
Reposted by Basile Beaud Benyahia
Kumaran Ramamurthi @ramamurthilab.bsky.social · 18/09/2026
Folks have known for years that adding magnesium to media rescues the lethality of deleting many 'essential' genes, but why? @eswaralab.bsky.social and @subtisilly.bsky.social say that free iron builds up in these mutants. Mg2+ mitigates this by redirecting metabolism towards limiting ROS production
04012
Reposted by Basile Beaud Benyahia
Ben Cooper @bfcoop.bsky.social · 18/09/2026
Really pleased to share our latest preprint, the result of a fantastic Anglo-Scots collaboration www.biorxiv.org/content/10.6... We uncover how the bacterial Rhesus protein NeRh50 diverges from canonical ammonium transporters 👇🧵 #CryoEM #MembraneProteins #MassSpectrometry #AmmoniumTransport
282
Reposted by Basile Beaud Benyahia
Kumaran Ramamurthi @ramamurthilab.bsky.social · 15/09/2026
How do proteins localize in bacteria? Usually by binding to a prelocalized protein-but how does that protein localize? @vanipande.bsky.social found a #Bacillus subtilis protein that localizes via a lipid cue,undecaprenyl phosphate,that guides it to sites of PG synthesis www.pnas.org/doi/10.1073/...
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
14214
Reposted by Basile Beaud Benyahia
Sergey Ovchinnikov @sokrypton.org · 14/09/2026
Finally a more intuitaive way to learn pLDDT/pAE? 😎 sokrypton.github.io/protein_figh... (Character idea from @hannes-stark.bsky.social & Alex Waldherr)
727698
Reposted by Basile Beaud Benyahia
Carballido-López's lab @carballido-lab.bsky.social · 25/08/2026
New preprint from the lab (link below), and first preprint from Matteo Gerard, who will soon be a doctor (and looking for a post-doc, just saying). Toolbox for fluorescent labelling of Pseudomonas aeruginosa across scales: from single cells to bacterial communities and host infection models.
2126
Reposted by Basile Beaud Benyahia
anna brogan @apbrogan.bsky.social · 18/08/2026
This is now published! For those interested in microbial mechanotransduction: www.cell.com/current-biol...
cell.com
Microbial GAIN domains undergo autoproteolysis and enable release of diverse cell-surface-associated proteins
Brogan and Rudner report the identification of a microbial autoproteolytic domain that is structurally homologous to the GAIN domain of eukaryotic adhesion GPCRs. Rather than participating in transmem...
13921
Reposted by Basile Beaud Benyahia
Marleen van Wolferen @marleenvw.bsky.social · 06/08/2026
With the 50th anniversary of #Archaea research coming up, read our latest review on one of its defining (and my favorite) model organisms: Sulfolobus acidocaldarius. #ArchaeaSky @archaellum.bsky.social, @sshamphavi.bsky.social, @michaelspaedt.bsky.social journals.asm.org/doi/10.1128/...
22612
Reposted by Basile Beaud Benyahia
Shamphavi Sivabalasarma @sshamphavi.bsky.social · 06/08/2026
Hot, acidic and an endlessly fascinating archaeal model organism! Check out our review on Sulfolobus acidocaldarius🥳
0115
Reposted by Basile Beaud Benyahia
Brian Stevenson Ph.D. spirochete lab @bstevensonlab.bsky.social · 29/07/2026
Devastated to report that Brandon Jutras passed away a day or two ago. Brandon earned his PhD with me. He went on to be an Associate Professor at Northwestern University School of Medicine and a super star in Lyme research. A loving husband and father, a sincere friend, and a brilliant scientist 💔
Brandon Jutras, PhD, in his laboratory.
12468
Reposted by Basile Beaud Benyahia
Fusion Conferences @fusionconf.bsky.social · 14/07/2026
Fantastic Prokaryotic Cell Biologists and where to find them! A truly lovely set of researchers, making huge progress and discoveries in their field. We hope you've all enjoyed the first 2 days, with plenty more to come. #ProkaryoticCellBio
1134
Reposted by Basile Beaud Benyahia
Géraldine Laloux @lalouxlab.bsky.social · 09/07/2026
New preprint! We show that the bacterial predator B. bacteriovorus deploys a unipolar Tad nanomachine for irreversible attachment to prey and invasion. @coralietesseur.bsky.social used CRISPRi+microfluidics to overcome barriers associated with essential systems in an obligate predatory lifestyle 🦠
biorxiv.org
A polarity-controlled Tad nanomachine enables prey invasion in a bacterial predator
Type IV pili are dynamic surface appendages assembled by envelope-spanning nanomachines that mediate diverse bacterial interactions, yet how these systems are adapted to predatory lifestyles remains p...
24717
Reposted by Basile Beaud Benyahia
fbm-unil.bsky.social @fbm-unil.bsky.social · 07/07/2026
🔬 Rencontre avec @navarropaula.bsky.social, pour qui les secrets du vivant se cachent à l’échelle atomique. Pour explorer cet univers minuscule, la biologiste s’appuie sur la #cryo-microscopie #électronique. Lire la suite 👉 www.unil.ch/news/fr/1783...
unil.ch
Lausanne, Terre promise de la cryo-microscopie électronique
Pour Paula Navarro, les secrets du vivant se cachent à l’échelle atomique. Pour explorer cet univers minuscule, la biologiste s’appuie sur la cryo-microscopie électronique. Et s’il y a un endroit où p...
195
Reposted by Basile Beaud Benyahia
STCmicrobeblog @stcmicrobeblog.bsky.social · 03/07/2026
(bacterial) cell divisionists take note 👇 happy to learn that this excellent work goes on! 👇 slide shown by tom bernhardt at the '24 EMBO workshop in alcobaça PT #MicroSky
072
Reposted by Basile Beaud Benyahia
Andrea Vettiger @avettiger.bsky.social · 03/07/2026
Excited to see our story published in @natmicrobiol.nature.com today! It’s been a long journey. We answered a major outstanding question: why does E. coli encode two aPBPs, yet only one plays a critical role in ensuring reliable PG fortification during cell division?
24614
Reposted by Basile Beaud Benyahia
Paula Navarro @navarropaula.bsky.social · 03/07/2026
🚨 New in @natmicrobiol.nature.com! We reveal how the antibiotic target PBP1b fortifies the E.coli division site against osmotic rupture. Proud this was completed in our independent labs @dmf-unil.bsky.social, with @avettiger.bsky.social. Congratulations to all authors! 🦠❄️🔬 #teamtomo bit.ly/3SCbOg1 👇
doi.org
The penicillin-binding protein PBP1b fortifies the Escherichia coli division site against osmotic rupture - Nature Microbiology
A specific isoform of PBP1b functions independently of the activator protein, LpoB, to drive generation of a wedge-like peptidoglycan structure that strengthens the division site in Escherichia coli.
39333
Reposted by Basile Beaud Benyahia
Rauf Salamzade @raufs.bsky.social · 26/06/2026
Microbes that have the greatest genomic potential for secondary metabolism tend to be multicellular. Here, we show that signatures of ancestral BGC expansions within 3 bacterial phyla and 2 fungal lineages coincide with origins of complex multicellularity [1/12] 🧵 www.nature.com/articles/s41...
nature.com
Complex multicellularity is linked with expanded specialized metabolite production in microorganisms - Nature Microbiology
The evolutionary emergence of complex multicellularity in bacteria and fungi, such as the ability for mycelial growth, is strongly associated with increased genomic carriage of biosynthetic machinery ...
16838
Reposted by Basile Beaud Benyahia
Evgenii Protasov @evgenii-protasov.bsky.social · 17/06/2026
A multilayered cell envelope of a member of the Chloroflexota offers an anchoring platform for the archaellum #microbiology #archaea #bacteria #MicroSky doi.org/10.3389/fmic...
0188
Reposted by Basile Beaud Benyahia
Pawel Burkhardt @pawelburkhardt.bsky.social · 16/06/2026
How ancient are the building blocks of animal sensory systems? Key components of animal sensory systems evolved before animals. We find that choanoflagellates possess diverse & spatially segregated TRP channels, pointing to ancient origins of sensory specialization. doi.org/10.64898/202...
411958
Reposted by Basile Beaud Benyahia
Torsten Günther @trstngnthr.bsky.social · 16/06/2026
I am recruiting a PhD student (fully funded, 4yrs) to analyze modern 🧬 and ancient 🦴 genomic data from humans and domestic animals 🐑 Please share, I am happy to chat at #ICP2026 or #SMBE2026 this summer www.uu.se/en/about-uu/...
uu.se
PhD student position in Population Genomics - Uppsala University
PhD student position in Population Genomics , Department of Organismal Biology, Uppsala University
183106
Reposted by Basile Beaud Benyahia
Katrina Velle @katrinavelle.bsky.social · 09/06/2026
After a long hiatus, happy #MicroscopyMonday! Here are some amoebae squeezing themselves into narrow channels (part of a video for our preprint pubmed.ncbi.nlm.nih.gov/41377514/). Sound effects by Dillon (my 4 month old who may have had a little to do with the bluesky hiatus!)
46013
Reposted by Basile Beaud Benyahia
Cascales Lab @cascaleslab.bsky.social · 05/06/2026
Happy to share the last work of Jonas Desjardins, identifying and characterizing a novel Rhs NAD(P) glycohydrolase delivered by the #T6SS of the major cosmetic contaminant, Pluralibacter gergoviae. www.jbc.org/article/S002...
03210
Reposted by Basile Beaud Benyahia
STCmicrobeblog @stcmicrobeblog.bsky.social · 05/06/2026
it's summer, and time to go to the pool. our post next monday will be about bacteria that swim the backstroke. stay tuned... #MicroSky
25214
Reposted by Basile Beaud Benyahia
Reese Richardson @reeserichardson.bsky.social · 05/06/2026
The Thermo Fisher situation keeps getting worse. We've now collected 450+ problematic images presented as verification data in TF's antibody catalog. This includes: 🖌️ Dozens more images with duplications or painting 🖨️ Hundreds of blots that all share the same background (behold slideshow below)
18590367
Reposted by Basile Beaud Benyahia
Olaya Rendueles @olayarendueles.bsky.social · 01/06/2026
🌟 Very proud of the newest Dr. in the team , Dr. @julielebris.bsky.social 👩‍🎓! She brilliantly defended her PhD last Friday @pasteur.fr Excellent thesis in terms of output & quality! Thanks to the jury @lucyweinert.bsky.social @sylvainbrisse.bsky.social @edfeil.bsky.social Maria Halima Laaberki
The big moment
0315
Reposted by Basile Beaud Benyahia
Brady Johnston @bradyajohnston.bsky.social · 28/05/2026
Some very cool simulations, look at those little guys climb that ladder! #MolecularNodes
09725
Reposted by Basile Beaud Benyahia
Emmanuele Severi @emmseveri.bsky.social · 22/05/2026
Massive fan of IQ-Tree! academic.oup.com/mbe/article/...
academic.oup.com
IQ-TREE 3: phylogenomic inference software using complex evolutionary models
Abstract. IQ-TREE (https://iqtree.github.io/) is a widely used open-source software tool for efficiently inferring phylogenetic trees under maximum likelih
0113
Reposted by Basile Beaud Benyahia
Fabien Burki @fburki.bsky.social · 22/05/2026
Live streaming from the Loki’s Castle hydrothermal vent. What a time to be alive! Thanks @paccardenas.bsky.social for sharing www.youtube.com/watch?v=SLua...
youtube.com
Deep Arctic - Divestream 04 - Loki's Castle
YouTube video by Greenpeace International
0101
Reposted by Basile Beaud Benyahia
Sonja-Verena Albers @archaellum.bsky.social · 20/05/2026
New preprint! Cell division has to happen at the right place but how Archaea pick that place is unknown. We now identified a three-protein system, Dip, that positions the divisome at midcell in H. volcanii and is broadly conserved across Archaea. A thread 🧵 www.biorxiv.org/content/10.6...
biorxiv.org
911252
Reposted by Basile Beaud Benyahia
Ben Larson @blarson.bsky.social · 19/05/2026
And now it's out! Happy that PNAS selected for the cover this SEM image snapped by @samjlord.bsky.social, one of the most evocative visualizations of Euplotes that I have ever encountered. www.pnas.org/doi/10.1073/... Stay tuned for what is shaping up to be some fascinating follow-up in the lab...
Scanning electron microscopy image of the ciliate Euplotes gigatrox on the cover of the journal PNAS. Distinct punk rock vibes
1016760
Reposted by Basile Beaud Benyahia
Thibaut Brunet @thibautbrunet.bsky.social · 20/05/2026
What could be better than giant cannibal ciliates? SUPERgiant cannibal ciliates, is the answer! Read below for a fascinating case study in the phenotypic plasticity of protists, full of fratricidal drama ⬇️
0122
Reposted by Basile Beaud Benyahia
Tung Le @tunglejic.bsky.social · 07/05/2026
@biorxiv-microbiol.bsky.social Who knew ParB-CTPase fold can kill!!! A protein fold best known for segregating chromosomes…can be transformed into a potent antibacterial toxin in some plant and animal pathogens. www.biorxiv.org/content/10.6...
biorxiv.org
Repurposing a chromosome segregation ParB-CTPase fold into an ATPase toxin for contact-dependent growth inhibition in plant and animal pathogens
Bacterial competition drives the evolution of antibacterial mechanisms, yet how new activities arise remains poorly understood. A major route to innovation is the reuse of pre-existing genetic systems, whereby conserved protein modules are repurposed in new biological contexts to generate new capabilities. Here, we show that the ParB-CTPase fold, a conserved nucleotide-binding module best known for its role in chromosome segregation, can be functionally repurposed as an antibacterial toxin. We identify ToxB, a ParB-like domain embedded within the polymorphic toxin region of contact-dependent inhibition systems and show that it functions as a potent antibacterial effector. Structural and biochemical analyses reveal that ToxB retains the core architecture of the ParB-CTPase fold but lacks DNA-binding capability and preferentially binds ATP. This shift in nucleotide specificity underpins a distinct mode of action, in which ATP binding and hydrolysis trigger rapid nucleoid compaction, chromosome segregation defects, oxidative stress, cell chaining, and ultimately cell lysis. ToxB also exhibits toxic activity in plant cells, suggesting that it targets conserved cellular processes. Together, these findings provide direct experimental evidence that the ParB-NTPase fold is biologically versatile and can be repurposed for biological roles fundamentally distinct from its ancestral function in DNA segregation. ### Competing Interest Statement The authors have declared no competing interest. Wellcome Trust, https://ror.org/029chgv08, 221776/Z/2/Z, 227755/Z/23/Z Biotechnology and Biological Sciences Research Council, https://ror.org/00cwqg982, BB/X01097X/1 Diamond Light Source, MX32728
76323
Reposted by Basile Beaud Benyahia
Raphael Laurenceau @raphael-microb.bsky.social · 02/05/2026
A really cool method we are just starting to explore!
063
Reposted by Basile Beaud Benyahia
Alex Crits-Christoph @acritschristoph.bsky.social · 25/04/2026
I just caught this really interesting paper today. They obtained genomes for a new species of Treponema using genome-resolved metagenomics, associated with Noma diease:
084
Reposted by Basile Beaud Benyahia
Amelia McKitterick @amelia-mckitterick.bsky.social · 23/04/2026
Happy to share the finalized version of my paper on phage lysis in bacteria with unique envelopes! 🎉 Bacteriophages target membrane-anchored glycopolymers to promote host cell lysis and progeny release www.pnas.org/doi/10.1073/...
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
23710
Reposted by Basile Beaud Benyahia
BejaLabTechnion @bejalab.bsky.social · 23/04/2026
A Marine Group A isolate relies on other growing bacteria for cell wall formation www.nature.com/articles/s41...
nature.com
A Marine Group A isolate relies on other growing bacteria for cell wall formation - Nature Microbiology
Marine Group A isolate IA91 captures peptidoglycan fragments produced by other growing bacteria and uses them to build its own cell wall, an effective and potentially common energy-saving strategy for...
0133
Reposted by Basile Beaud Benyahia
BejaLabTechnion @bejalab.bsky.social · 20/04/2026
Bridging the membrane lipid divide: bacteria of the FCB group superphylum have the potential to synthesize archaeal ether lipids pmc.ncbi.nlm.nih.gov/articles/PMC...
063
Reposted by Basile Beaud Benyahia
Institut Pasteur | 130 years of biomedical research @pasteur.fr · 16/04/2026
🥈 CNRS Silver Medal 2026 → Romain Koszul For his interdisciplinary contributions to chromosome biology and pioneering genomic methodologies (HiC-scaffolding, metaHiC), decoding how genomes organize in 3D across all domains of life. @rkoszul.bsky.social @cnrs.fr
Romain Koszul
1184
Reposted by Basile Beaud Benyahia
Mihail Zdravkov @mzdravkov.mastodon.green.ap.brid.gy · 07/04/2026
Dear Nanopore folks, could you give an advice about an issue that my lab has with direct RNA sequencing on MinION. We're doing RNA004 sequencing of various samples and again and again, there's a staggering amount of reads with just repetitive AAG triplet. This happens for weird IVT RNA and […]
mastodon.green
Original post on mastodon.green
005
Reposted by Basile Beaud Benyahia
M. Stephen Trent @mstrent.bsky.social · 10/04/2026
We are recruiting postdocs to work on antimicrobial resistance and bacterial cell envelope biology. PLEASE SHARE.
11627
Reposted by Basile Beaud Benyahia
Nature Microbiology @natmicrobiol.nature.com · 07/04/2026
Out Now! Local peptidoglycan composition defines division site selection in Streptococcus pneumoniae #MicroSky
go.nature.com
Local peptidoglycan composition defines division site selection in Streptococcus pneumoniae
Nature Microbiology, Published online: 07 April 2026; doi:10.1038/s41564-026-02322-6Sequential peptidoglycan carboxylase activity of DacA and DacB generates a local peptidoglycan signature that recruits MapZ and establishes the division site at the Streptococcus pneumoniae cell equator.
03415
Reposted by Basile Beaud Benyahia
CNRS Biologie @cnrsbiologie.bsky.social · 07/04/2026
#ResultatScientifique🔎| Décryptage de la division chez Streptococcus pneumoniae 🦠 ✍️ Christophe Grangeasse 👋 @cnrs-rhoneauvergne.bsky.social @mmsb-lyon.bsky.social 📕 @natmicrobiol.nature.com 👉️ buff.ly/4BWTJf7 L'actu CNRS Biologie ⤵️
buff.ly
Division bactérienne : Un signal transitoire positionne le site de division chez les streptocoques
Streptococcus pneumoniae présente des spécificités dans son mode de division.
043
Reposted by Basile Beaud Benyahia
Olaya Rendueles @olayarendueles.bsky.social · 26/03/2026
So happy to see this finally published in @plosbiology.org! This is the first chapter of @julielebris.bsky.social PhD thesis demonstrating how capsules are exchanged by plug-and-play dynamics w/ @epcrocha.bsky.social #microsky @klebclub.bsky.social Link below- Check out her 🧵 for more details!
doi.org
Plug-and-play evolution of the Klebsiella pneumoniae capsule locus enables serotype exchange across genetic backgrounds
How complex multi-gene systems evolve across genetic backgrounds without disruptive epistasis remains unclear, particularly in highly exchangeable loci such as the capsule of Klebsiella pneumoniae. Th...
25433
Reposted by Basile Beaud Benyahia
Nature @nature.com · 25/03/2026
Dogs were hunter-gatherer's best friend go.nature.com/4bS8CCZ
go.nature.com
Who let the wolves in? Genetic record for domestic dogs pushed back by 5,000 years
The oldest ancient dog genomes on record all come from a population that lived alongside Ice Age hunter-gatherers across Europe and the Middle East.
0477