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Sonja-Verena Albers

@archaellum.bsky.social
1.4K followers 521 following 151 posts

PI at the University of Freiburg, interested in molecular microbiology and all things related to #archaea

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Reposted by Sonja-Verena Albers
Cameron Thrash @jcamthrash.bsky.social · 30/09/2026
Dynamic protrusions mediate crawling motility in Asgard archaea www.nature.com/articles/s41... #jcampubs
nature.com
Dynamic protrusions mediate crawling motility in Asgard archaea - Nature
Anoxic live-cell imaging shows actin-dependent crawling motility and dynamic protrusions in Asgard archaea, providing insights into cellular innovations that may have contributed to eukaryotic evoluti...
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Svetlana Dodonova @dodonova-sveta.bsky.social · 30/09/2026
New preprint from Dodonova lab 🔔! Capturing multiple states by cryo-EM❄️, we show for the first time how archaeal RNA Polymerase engages a nucleosome and forms direct contacts with histones! 🧬 Great work by Gabriele & a fantastic collaboration with Dina Grohmann! 🧵 www.biorxiv.org/content/10.6...
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Simonetta Gribaldo @sgribaldo.bsky.social · 23/09/2026
We are particularly proud of this work given the upcoming 50th anniversary of the discovery of Archaea in 1977 (same year Punk broke 😉) They continue to hold big surprises impacting all aspects of microbiology and evolution. Hope it'll encourage more young scientists to join this exciting field! 9/9
A free "archaeal" re-interpretation of the famous slogan "Punk's not dead", made by AI and just meant to be funny ;-)
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Cameron Thrash @jcamthrash.bsky.social · 21/09/2026
Domain classification of archaeal proteomes reveals conserved fold repertoire journals.plos.org/ploscompbiol... #jcampubs
journals.plos.org
Domain classification of archaeal proteomes reveals conserved fold repertoire
Author summary Archaea are the least-studied of the three domains of life, yet they matter enormously: they flourish in extreme environments, drive global nutrient cycles, and are closely tied to the ...
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Reposted by Sonja-Verena Albers
Simonetta Gribaldo @sgribaldo.bsky.social · 23/09/2026
Interested in #archaea, #methane, #cell-envelopes? New paper out @nature.com ! We discovered an enzyme that specifically cleaves the cell wall of methanogens, revealing a new chemical structure of archaeal peptidoglycan, 50 yrs after its first description www.nature.com/articles/s41... #MicroSky 🧵👇
nature.com
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Shicheng Guo @shihcheng.bsky.social · 13/09/2026
New research reveals a family of 4 hibernation factors (SriA-SriD) in the archaeon Methanosarcina acetivorans, protecting ribosomes under stress for efficient dormancy. PMID:42350466, Nat Commun 2026, @NatureComms doi.org/10.1038/s41467-026-74727-0 #Medsky #Pharmsky #RNA #ASHG #ESHG 🧪
doi.org
A family of archaeal hibernation factors that bind in tandem and protect ribosomes in dormant cells | Nature Communications
Under nutrient limitation or stress, ribosome hibernation factors inactivate and protect ribosomes. Although ribosome hibernation plays an important role in microbes, we lack a complete understanding of this process in archaea. Here, we identify a family of hibernation factors, which we designate as single ribosomal subunit inhibitors (SriA-SriD), from the methanogenic archaeon Methanosarcina acetivorans. All four sri genes are encoded in an operon and each Sri protein inhibits protein synthesis in vitro. Deletion of sri genes in M. acetivorans impaired growth recovery after prolonged stationary phase and also led to depletion of the small ribosomal subunit. Cryo-EM structures show that Sri proteins bind to the ribosome in tandem and form conserved protein-protein interfaces. Sri is broadly distributed across archaeal phyla and sri genes frequently co-occur. Together, these findings establish Sri proteins as a distinct group of hibernation factors that protect ribosomes during dormancy
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Cameron Thrash @jcamthrash.bsky.social · 08/09/2026
Molecular basis of N2 fixation in a hyperthermophilic archaeon www.nature.com/articles/s41... #jcampubs
nature.com
Molecular basis of N2 fixation in a hyperthermophilic archaeon - Nature Communications
Nitrogenases are enzymes that convert atmospheric N2 into ammonia, thus providing bioavailable nitrogen to living organisms. Here, Maslać et al. describe a highly thermostable, simple nitrogenase from...
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EMBO @embo.org · 24/08/2026
Sign up now for the EMBO Workshop "Bacterial and archaeal #CellDivision: Diverse mechanisms and models" in Barga (Lucca), Italy, 20–23 April 2027. Deadline: 6 January 2027 meetings.embo.org/event/27-cell-div… #EMBObacDiv27 #genetics #biochemistry #StructuralBiology #EMBOevents 🧪
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bioRxivpreprint @biorxivpreprint.bsky.social · 22/08/2026
Exopolysaccharide export complex PelBC of Pseudomonas aeruginosa attenuates the dynamics of the surrounding outer membrane www.biorxiv.org/content/10.64898/20…
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Reposted by Sonja-Verena Albers
Tanmay Bharat @tbharat-lab.bsky.social · 23/08/2026
Molecular architecture of colossal surface layers from hyperthermophilic archaea Led by @idocaspy.bsky.social (Ido) In collaboration with @mkrupovic.bsky.social and @vikramalva.bsky.social labs doi.org/10.64898/202...
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Ákos T Kovács @evolvedbiofilm.bsky.social · 21/08/2026
Bacterial nanotubes extend from a tubeosome organelle to establish an intercellular bridge bioRxiv by @mkguria24.bsky.social et al from Sigal Ben-Yehuda www.biorxiv.org/content/10.6...
biorxiv.org
Bacterial nanotubes extend from a tubeosome organelle to establish an intercellular bridge
Bacterial nanotubes are widespread intercellular membranous bridges mediating molecular exchange among neighboring cells, yet their formation and dynamics remain largely unexplored. By combining live-...
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bioRxivpreprint @biorxivpreprint.bsky.social · 22/08/2026
Molecular architecture of colossal surface layers from hyperthermophilic archaea www.biorxiv.org/content/10.64898/20…
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Pedro Leão @pedroleao.bsky.social · 20/08/2026
Ori-Finder-Arch: An Updated Web Server for the Annotation and Visualization of Archaeal Replication Origins doi:10.64898/2026.08.15.744077 sciflow.eu?paper=565306
sciflow.eu
Ori-Finder-Arch: An Updated Web Server for the Annotation and Visualization of Archaeal Replication Origins
bioRxiv · 19 Aug 2026 — Archaea are promising chassis organisms in biotechnology, and the accurate annotation of their chromosomal replication origins (oriCs) is the key to unlocking their full potent...
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Marleen van Wolferen @marleenvw.bsky.social · 06/08/2026
With the 50th anniversary of #Archaea research coming up, read our latest review on one of its defining (and my favorite) model organisms: Sulfolobus acidocaldarius. #ArchaeaSky @archaellum.bsky.social, @sshamphavi.bsky.social, @michaelspaedt.bsky.social journals.asm.org/doi/10.1128/...
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Romain Strock @romainstrock.bsky.social · 29/07/2026
Preprint alert: the final two chapters of my thesis are out! www.biorxiv.org/content/10.6... Bacteriocins in archaea and archaeocins in bacteria: a computational journey into the search for weaponry borrowed from another domain of life. A short 🧵
biorxiv.org
Bacteriocins in archaea and archaeocins in bacteria
Archaea and bacteria routinely live side by side in microbial communities and must interact at least on occasion. Whether such cross-Domain interactions are dominated by mutual disregard, co-operation...
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Evgenii Protasov @evgenii-protasov.bsky.social · 27/07/2026
Two types of sheathed archaellum structures from Haloarcula marismortui differ in their outer layer architectures #microbiology #archaea #MicroSky #ArchaeaSky @natcomms.nature.com www.nature.com/articles/s41...
nature.com
Two types of sheathed archaellum structures from Haloarcula marismortui differ in their outer layer architectures - Nature Communications
Archaea can swim using rotating helical filaments called archaella. Here, Meshcheryakov et al. report that the cryo-EM structures of two types of archaella from Haloarcula marismortui display a unique...
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Pedro Leão @pedroleao.bsky.social · 27/07/2026
The manuscript introducing ArchaeaHQ is still under review😴 As science can't wait... I'm making available a version of the dashboard we use. vee-lab.eu/archaeahq Here the user can have quick access to the information in the database, and select specific genomes of interest. Enjoy 🎉
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Archaea Biotech @archaeabiotech.bsky.social · 22/07/2026
🔬 Four #ARCTECH doctoral candidates represented the network at #MBoA2026 in Cambridge, sharing research through oral and poster presentations while connecting with the international #archaeal research community. Congratulations to all participants! #Archaea #MSCA #EMBO #HorizonEurope
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Kedrov Lab @ HHU @kedrov-lab.bsky.social · 16/07/2026
Some more "legacy" of CRC 1208 @hhu.de: A brief up-to-date review of crowding effects in biological membranes - diversity of consequences, and approaches to mimic and to quantify. Thanks to Laura Hartmann @uni-freiburg.de for joining, and COSB for the invitation www.sciencedirect.com/science/arti...
sciencedirect.com
Crowding at the cellular membranes: Emerging physiological roles and novel study approaches
Cellular membranes are essentially complex and heterogeneous assemblies. The lipid bilayer forms the basis of the membrane architecture, and the assoc…
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Reposted by Sonja-Verena Albers
Kermit Murray @kkmurray.bsky.social · 16/07/2026
(BioRxiv All) Systematic identification of cell division proteins in haloarchaea and the discovery of a membrane anchor for the Z ring: Most archaea rely on the tubulin-like protein FtsZ for division. In the last decade, several novel cell division proteins have been… #BioRxiv #MassSpecRSS
dlvr.it
Systematic identification of cell division proteins in haloarchaea and the discovery of a membrane anchor for the Z ring
Most archaea rely on the tubulin-like protein FtsZ for division. In the last decade, several novel cell division proteins have been discovered in the model haloarchaeon Haloferax volcanii which contains two FtsZ proteins, FtsZ1 and FtsZ2. However, the composition of this FtsZ-based archaeal divisome is largely uncharacterized. Here, using in vivo crosslinking coupled with immunoprecipitation and mass spectrometry (CLIP-MS), we identified ten proteins that localize to the division site, including wide-spread proteins predicted to be involved in DNA binding and energy metabolism. Deletion analysis indicate that most of these proteins have a modest or minor impact on cell division, but HVO_0399, renamed as Cell Division Protein C (CdpC), is important for cell division and functions as a membrane anchor for FtsZ1. CdpC consists of three domains, an N-terminal domain (NTD) containing an amphipathic helix critical for membrane binding, a long intrinsically disordered linker, and a C-terminal domain (CTD) that binds FtsZ1 with high affinity and likely promotes its polymerization. Notably, both the NTD and CTD of CdpC harbor a zinc finger that is indispensable for its function. Phylogenetic analysis indicates that CdpC sequences evolved fast across haloarchaea, but exhibited high conservation in domain structure and critical residues found in this study. Overall, our study expands the repertoire of candidate division proteins and establishes CdpC as a membrane anchor for FtsZ1 in haloarchaea. These findings pave the way for in-depth studies of arcaheal cell division and broaden the function of zinc finger proteins in archaea.
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CIBSS – Centre for Integrative Biological Signalling Studies @cibss.bsky.social · 13/07/2026
📣 #JobAlert The Faculty of Biology of @uni-freiburg.de invites applications for a Professorship (W3) for Bioinformatics and Molecular Genetics. ❗ Application Deadline: 15 August, 2026 🔗 kurzlinks.de/roi8 #Biology #Bioinformatics #MolecularGenetics
Job alert text with logo of University of Freiburg.
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Malcolm White @mfwhite2.bsky.social · 09/07/2026
Wonderful to hear Carl Stetter reminisce on the discovery of Archaea at MBoA2026
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Gregor Weiss @weiss-lab.bsky.social · 10/07/2026
Some bacteria do not live as individuals. They build multicellular filaments and connect neighboring cells through tiny cell-cell junctions. Cyanobacteria are among the most beautiful examples 😍 In our new paper, we reveal first molecuar insights on the cyanobacterial septal junction architecture 🧵
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Mathieu M.J.E. Rebeaud @chercheurjuteux.com · 08/07/2026
Start of the third day of #MboA Session 5: Archaea in context First talk of the day will be Fengping Wang about "Archaea and its functions in marine sediments"
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trisre.bsky.social @trisre.bsky.social · 06/07/2026
1/ Happy to share our preprint! The Mtr complex catalyses the second-to-last step of the methanogenesis and is an essential bioenergetic machine in most methanogenic archaea. Anaerobic cryo-EM of Mtr reveals a nitrogenase-like metallocluster bound at its active site! www.biorxiv.org/content/10.6...
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Mathieu M.J.E. Rebeaud @chercheurjuteux.com · 07/07/2026
Start of the second day of #MBoA Session 3: Archaeal evolution @greening.bsky.social will talk about "Archaeal hydrogen metabolism: ancient origins and contemporary diversity" With papers like www.cell.com/cell/fulltex...
cell.com
Minimal and hybrid hydrogenases are active from archaea
Archaea produce [FeFe] hydrogenases, previously thought to be only made by bacteria and eukaryotes. These enzymes are remarkably diverse, spanning ultraminimal fermentative enzymes to ancient hybrid c...
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Chung Hyun Cho @chc-evobio.bsky.social · 04/07/2026
Excited to share our new preprint led by Fred and me in collaboration with the archaeal community! We found that the molecular foundation of histone-based chromatin has pre-eukaryotic roots in Asgard archaea. (1/4) #ArchaeaSky www.biorxiv.org/content/10.6...
biorxiv.org
Emergence of histone-based chromatin complexity in Asgard archaea
The emergence of the eukaryotes coincided with the diversification of histone proteins and their post-translational modifications by enzymes that constitute the core of eukaryotic chromatin. Yet the e...
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The EMBO Journal @embojournal.org · 29/06/2026
Substrate-induced assembly and functional mechanism of the membrane protein insertase SecYEG-YidC @kedrov-lab.bsky.social, Roland Beckmann and coworkers link.springer.com/article/10.1...
link.springer.com
Substrate-induced assembly and functional mechanism of the membrane protein insertase SecYEG-YidC - The EMBO Journal
The Sec translocon and the YidC/Oxa1-type insertases universally mediate biogenesis of α-helical membrane proteins, but the molecular basis of their cooperation has remained disputed. Recent discovery...
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Cameron Thrash @jcamthrash.bsky.social · 26/06/2026
A family of archaeal hibernation factors that bind in tandem and protect ribosomes in dormant cells www.nature.com/articles/s41... #jcampubs
nature.com
A family of archaeal hibernation factors that bind in tandem and protect ribosomes in dormant cells - Nature Communications
Hibernation factors preserve ribosomes during cellular dormancy. Here, the authors identify a family of archaeal hibernation factors and use genetic, biochemical, and structural studies to show how th...
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Suckjoon Jun’s lab at UCSD @junlab.bsky.social · 18/06/2026
1/ Out today in Science (@science.org): a result a decade in the making, and one that changed how I think about what cells are doing when they grow. We found a bacterium that grows slower than it could. And we found the molecular switch that lets us reverse it.
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Cascales Lab @cascaleslab.bsky.social · 18/06/2026
Extension of the deadline for latecomers. Register to the Secretion Days in Marseille !
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Tominaga K. (tomiken) @pacyc184.bsky.social · 18/06/2026
High-resolution transcriptome analysis reveals a multilayered and dynamic transcriptional architecture in the archaeal virus SSV1 | bioRxiv www.biorxiv.org/content/10.64898/20…
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Adrià Sogues @adriasogues.bsky.social · 18/06/2026
Meet AbpX, a biomatrix protein from the hyperthermophile Pyrodictium abyssi. It forms Ca²⁺-triggered fibrils via donor strand complementation. Using cryo-EM + X-ray, we built a full lattice model and place AbpX in a new TasA superfamily clade. A very nice collaborative project! tinyurl.com/mryzcz4n
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Evgenii Protasov @evgenii-protasov.bsky.social · 17/06/2026
A multilayered cell envelope of a member of the Chloroflexota offers an anchoring platform for the archaellum #microbiology #archaea #bacteria #MicroSky doi.org/10.3389/fmic...
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Evgenii Protasov @evgenii-protasov.bsky.social · 14/06/2026
Cultivation and molecular profiling reveal ammonia-oxidizing archaea as skin commensals #microbiology #archaea #ammonia #MicroSky @isme-microbes.bsky.social doi.org/10.1093/isme...
doi.org
Cultivation and molecular profiling reveal ammonia-oxidizing archaea as skin commensals
Abstract. Ammonia-oxidizing archaea (AOA) have repeatedly been detected with molecular methods on human skin, yet their persistence, physiological traits,
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Evgenii Protasov @evgenii-protasov.bsky.social · 14/06/2026
Archaeal and eukaryotic MCM rings sequentially melt DNA for replication initiation @natcomms.nature.com #microbiology #archaea #eukaryotes #MicroSky doi.org/10.1038/s414...
doi.org
Archaeal and eukaryotic MCM rings sequentially melt DNA for replication initiation - Nature Communications
To prepare for DNA replication, a short region of DNA base-pairs must be broken, termed melting, allowing a helicase to gain a foothold on an isolated DNA strand. Here, authors use single-particle cry...
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EMBO Reports @emboreports.org · 15/06/2026
Philipp Rieche, Marten Exterkate, Arnold Driessen et al show that the #lipid divide between #bacteria and #archaea is not as strict as previously thought as bacterial lipid synthesizing enzymes can use both stereo-forms of glycerol-phosphate. #MembraneBiology -> link.springer.com/article/10.1...
link.springer.com
Bacterial lipid synthesizing enzymes PlsY and PlsC utilize both stereo-forms of glycerol-phosphate - EMBO Reports
The chemical composition of membrane lipids differs between eukarya, bacteria and archaea. The central dogma posits that the stereochemistry of phospholipids in bacteria is distinct from archaea. Bact...
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 06/06/2026
Transcription factor CCTF1 plays a decisive role in regulating the proteasome activity during archaeal cell division www.biorxiv.org/content/10.64898/20…
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PLOS Biology @plosbiology.org · 05/06/2026
The T6SS is a widespread nanoweapon deployed by #bacteria, but why is it deployed heterogeneously? @cascaleslab.bsky.social &co show that #Ecoli adopt distinct #T6SS attacker "ON" & defender "OFF" roles to optimize survival, a key strategy in microbial warfare @plosbiology.org 🧪 plos.io/3S5dL45
Top: Representative confocal fields of the 3 types of TssC-GFP-TssK microcolonies (homogeneous ON, heterogeneous, homogeneous OFF). Scale bars, 10 μm. Bottom:  Model for the role of T6SS phenotypic heterogeneity in EAEC. Top: The Psci1 promoter integrates Fur- and Dam-dependent regulation, generating ON (T6SS⁺, yellow) and OFF (T6SS⁻, blue) subpopulations at a reversible equilibrium. Bottom left: OFF (blue) cells, which do not express T6SS, do not kill competitors but avoid triggering such defences (1). Due to the absence of killing activity, OFF cells are unable to colonize the niche (2). Bottom centre: While ON (yellow) cells assemble and deploy functional T6SS (1) and kill susceptible competitors (2), they provoke retaliatory attacks from defensive T6SS⁺ species (gray) and are eliminated and fail to colonize the niche (3). Bottom right: Heterogeneous ON/OFF population (1) optimizes colonization by killing neighboring cells (2). While ON (yellow) cells are eliminated by counterattacks by defensive T6SS+ species (gray), OFF (blue) cells resist (3) and can ensure a continuous supply of ON cells (4-5) while limiting population-wide exposure to retaliation.
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Pedro Leão @pedroleao.bsky.social · 05/06/2026
I'm happy to share the first pre-print of out Lab! 🎉 Introducing ArchaeaHQ www.biorxiv.org/content/10.6... We curated 21,644 genomes across all 4 archaeal kingdoms to bridge the gap in public datasets for computational biology What is inside ArchaeaHQ... (1/2)
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Molecular Biology and Evolution @molbioevol.bsky.social · 27/05/2026
@joshnhamm.bsky.social @ndombrowski.bsky.social @greening.bsky.social @luisvalentin.bsky.social et al. provide the first investigation into the enigmatic Terrarchaeota and insights into the evolution of high salt adaptation in Archaea. 🔗 doi.org/10.1093/molbev/msag091 #evobio #molbio #microbeSky
doi.org
New lineages provide insights into the convergent evolution of extreme salt adaptation within symbiotic Archaea
Abstract. Environmental genomics has led to the discovery of many new lineages of archaea, including “DPANN” (or Nanobdellati), comprising organisms with s
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Cameron Thrash @jcamthrash.bsky.social · 26/05/2026
Effects of sulfide on the activity of the ammonia-oxidizing archaeon Nitrosopumilus maritimus SCM1 www.biorxiv.org/content/10.6... #jcampubs
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BejaLabTechnion @bejalab.bsky.social · 26/05/2026
Active virus-host system in a Lokiarchaeon culture www.biorxiv.org/content/10.6...
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Sonja-Verena Albers @archaellum.bsky.social · 20/05/2026
New preprint! Cell division has to happen at the right place but how Archaea pick that place is unknown. We now identified a three-protein system, Dip, that positions the divisome at midcell in H. volcanii and is broadly conserved across Archaea. A thread 🧵 www.biorxiv.org/content/10.6...
biorxiv.org
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Evgenii Protasov @evgenii-protasov.bsky.social · 10/05/2026
Some archaea like coffee too 🤓☕️ Using coffee waste as feedstock for continuous cultivation of Sulfolobus acidocaldarius #microbiology #archaea #coffee #Sulfolobus #MicroSky #ArchaeaSky www.sciencedirect.com/science/arti...
sciencedirect.com
Using coffee waste as feedstock for continuous cultivation of Sulfolobus acidocaldarius
Sulfolobus acidocaldarius is a thermoacidophilic archaeon with high potential for robust continuous bioprocesses under extreme conditions. In this stu…
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Archaea Biology Vienna @archaea-vienna.bsky.social · 11/05/2026
Do biofilms give an ecological advantage? Yes! A fantastic follow-up to our previous biofilm work in ammonia-oxidizing archaea: "Biofilm Lifestyle Drives Ecophysiological Niche Expansion in an Archaeal Soil Nitrifier" www.biorxiv.org/content/10.6... Congratulations to all authors! #archaea
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John Tweedie @johntweedie.bsky.social · 27/04/2026
‘Wolfe, these things aren't even bacteria.’ The moment when only two people in the world knew about Archaea. Virginia Morell describes Carl Woese's discovery of a new branch of the tree of life, an idea that in 1997 when this was written, some still didn't accept. www.science.org/doi/10.1126/...
science.org
Microbial Biology: Microbiology's Scarred Revolutionary
Microbial biology is undergoing a renaissance, and in this special section we explore bursts of progress in areas ranging from how pathogens invade cells to the origins of life. News reports beginning...
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Shamphavi Sivabalasarma @sshamphavi.bsky.social · 27/04/2026
This suggests that TFF systems are not mere surface filaments but can be functionalized for substrate scavenging! And if anyone remembers just like bindosomes that @archaellum.bsky.social described once!
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Shamphavi Sivabalasarma @sshamphavi.bsky.social · 27/04/2026
we screened for proteins with a class III signal peptide cleavage site, a hallmark for pilins. And surprise archaea encode for several substrate binding proteins with a class III signal peptidase site!
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Shamphavi Sivabalasarma @sshamphavi.bsky.social · 27/04/2026
But what could their function be? (4/n)
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