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Raphael Laurenceau

@raphael-microb.bsky.social
163 followers 111 following 76 posts

Microbiologist

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Reposted by Raphael Laurenceau
Rasmus Jensen @rasmusjensen.bsky.social · 25/09/2026
🎉 Out today in Cell: the paper I've been looking forward to sharing for a long time 🎉 We used cryo-ET to find a molecular machine nobody knew existed on the surface of a minimal bacterium, and worked out what it does. 🧵(1/7) #TeamTomo #cryoET
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Raphael Laurenceau @raphael-microb.bsky.social · 24/09/2026
www.anthropic.com/news/claude-...
anthropic.com
Claude discovers a novel enzyme system
In early results from our new life sciences research lab, Claude agents found an enzyme system whose function is still unknown.
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Reposted by Raphael Laurenceau
Vivek Mutalik @vivekmutalik.bsky.social · 19/09/2026
Some of the smallest 😎 viruses on Earth are all around us. Three or four genes 😍 each, in nearly every environment. We keep finding thousands by sequencing, yet don't know who they infect, can't easily isolate them, or even how the few we have infect a cell. Our new preprint takes this on 🧵👇
Schematics of how single strand RNA and DNA phages infect bacteria with F-pilus
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Reposted by Raphael Laurenceau
Ben Parker @ben-parker.bsky.social · 21/09/2026
Excited that our new paper with @henrylabsymbio.bsky.social and Kerry Oliver is out @pnas.org! We show that mobile genetic elements can spread adaptive host-benefiting traits across heritable insect symbionts on eco-evolutionary timescales.🧵 www.pnas.org/doi/10.1073/...
pnas.org
Phenotypic divergence is driven by mobile genetic elements in a heritable insect symbiont | PNAS
Heritable microbes profoundly influence insect biology, yet the traits they confer often evolve rapidly and differ among closely related symbiont s...
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Raphael Laurenceau @raphael-microb.bsky.social · 17/09/2026
www.nature.com/articles/s41...
nature.com
Targeted genomic integration and rearrangement using prime assembly - Nature
Prime assembly enables RNA-guided integration of medium-to-large DNA sequences in human cells without requiring double-strand breaks or cell cycle progression, and supports exon recoding, transgene in...
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Reposted by Raphael Laurenceau
Jan-Willem Veening @veeninglab.com · 03/09/2026
Clonal does not mean uniform. #MicroSky Our new review explores how genetically identical bacteria adopt different cell states, and how that diversity shapes survival, cooperation, antibiotic responses and gene transfer. 🧵 doi.org/10.1146/annu...
doi.org
Decoding Bistability and Drivers of Phenotypic Variation in Bacteria
In a process known as phenotypic heterogeneity or phenotypic variation, bacteria can produce distinct phenotypes within an isogenic population in response to shifting environmental conditions. Noise i...
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Reposted by Raphael Laurenceau
Axel Visel @axelvisel.bsky.social · 31/08/2026
A Global Catalog of Microbial Symbionts 🌍🦠🧬🫨 New resource from @jgi.doe.gov, led by @astrogenomics.bsky.social and @fmschu.bsky.social with contributions by @emileyeloe-fadrosh.bsky.social @miferg.bsky.social and many more 🔓 www.nature.com/articles/s41... @biosci.lbl.gov @berkeleylab.lbl.gov
nature.com
A genomic catalog of Earth’s bacterial and archaeal symbionts - Nature Biotechnology
Symbiotic relationships of microorganisms are predicted and cataloged with a machine learning tool.
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Reposted by Raphael Laurenceau
Tara Bartolec @tarabartolec.bsky.social · 20/08/2026
So happy to share that this work is finally out, now in @nature.com! Lots of new goodies since preprint so plz check it out (old thread below). Giant thank you to everybody involved + all @savitski-lab.bsky.social and @typaslab.bsky.social lab members 🙏🙏🙏 @embl.org nature.com/articles/s41...
nature.com
Pervasive phosphorylation by phage T7 kinase disarms bacterial defences - Nature
The T7 bacteriophage deactivates bacterial defence systems through T7K phosphorylation of nearly all host and phage proteins during infection.
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Reposted by Raphael Laurenceau
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 18/08/2026
academic.oup.com/nar/article/... 🦠
academic.oup.com
The leading region of many plasmids is adapted for translational efficiency
Abstract. To successfully transfer, conjugative plasmids must overcome a recipient cell’s defence mechanisms. The leading region of many plasmids—the first
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Raphael Laurenceau @raphael-microb.bsky.social · 12/08/2026
www.thelancet.com/journals/lan...
thelancet.com
Safety, recovery, and pharmacodynamics of CRISPR–Cas therapeutic SNIPR001: a phase 1, randomised, double-blind, first-in-human, dose-escalation study
This first-in-human study of SNIPR001 supported its safety, tolerability, and restriction to the gastrointestinal tract, while not systemically disrupting the gut microbiome. These results justify fur...
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Raphael Laurenceau @raphael-microb.bsky.social · 06/08/2026
Yet another audacious origin of life theory www.pnas.org/doi/10.1073/...
pnas.org
Palindrome in the sequence of the ribosomal peptidyl transferase center suggests a protoribosome emergence scheme | PNAS
The emergence of a simple version of the modern ribosome represents an indispensable step in the evolution of life as we know it. Standalone dimeri...
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Raphael Laurenceau @raphael-microb.bsky.social · 06/08/2026
That is one bold theory. Bacteria and Archaea would represent two independent events when life “freed metabolism from the crust” of a hydrothermal vent. www.science.org/doi/10.1126/...
science.org
Intermediate stages in the origin of metabolism at a phosphorylating hydrothermal vent
Enzymatic metabolism emerged from metal-catalyzed, aqueous reactions of H2, CO2, NH3 and phosphite at a hydrothermal vent.
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Raphael Laurenceau @raphael-microb.bsky.social · 05/08/2026
www.nature.com/articles/s41...
nature.com
Phage hijacks host phosphorothioate DNA modification machinery to circumvent bacterial Ssp defences - Nature Microbiology
The phage-encoded protein PptA enables its DNA to masquerade as the host and evade cleavage, providing a potential foundation for engineering therapeutic phages that could bypass this widespread defen...
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Raphael Laurenceau @raphael-microb.bsky.social · 03/08/2026
www.nature.com/articles/s41...
nature.com
Designing fiber–gut microbiome interactions with active learning - Nature Chemical Biology
Dietary fibers are a primary energy source for gut bacteria and shape the composition and function of the microbiome. Now, an active learning approach integrating explainable machine learning, Bayesia...
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Raphael Laurenceau @raphael-microb.bsky.social · 03/08/2026
www.nature.com/articles/s41...
nature.com
AI design of gut microbiomes - Nature Chemical Biology
The gut microbiome converts dietary fiber into metabolites that shape human health, but identifying the right combinations of microorganisms and nutrients has been a challenge. A machine learning fram...
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Raphael Laurenceau @raphael-microb.bsky.social · 27/07/2026
www.nature.com/articles/s41... Wow. So complex, and yet so neat and simple at the same time. It feels like this type of regulatory efficiency could only be seen in bacterial genetics
nature.com
CRISPR–Cas regulates expression of embedded anti-phage defence systems - Nature
CRISPR–Cas systems transcriptionally tune diverse innate defences using CRISPR RNA-like guides to balance antiviral protection with fitness, and hyperactivate these defences when compromised, establis...
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Reposted by Raphael Laurenceau
Vicki Orr @vickiorr.bsky.social · 24/07/2026
Our pQBR plasmid paper is out! A model environmental plasmid collection that contains no known AMR genes and worldwide relatives! @jpjhall.bsky.social @ellieevolves.bsky.social @dwrivett.bsky.social and Rosanna Wright @microbiologysociety.org microbiologyresearch.org/content/journal/mgen/10.1099
microbiologyresearch.org
The pQBR mercury resistance plasmids: a model set of sympatric environmental mobile genetic elements
Plasmids are extrachromosomal mobile genetic elements that can facilitate rapid bacterial adaptation by transferring genes between individuals. Whilst plasmids are known to exist in diverse habitats a...
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Reposted by Raphael Laurenceau
Vivek Mutalik @vivekmutalik.bsky.social · 25/07/2026
Surface architecture of the bacterial envelope determines phage adsorption route in pathogenic Escherichia coli O157:H7 www.biorxiv.org/content/10.6...
biorxiv.org
Surface architecture of the bacterial envelope determines phage adsorption route in pathogenic Escherichia coli O157:H7
The outermost surface layers of Gram-negative bacteria determine phage access to terminal receptors, yet their genetic basis has been mapped almost exclusively in laboratory strains that lack them. He...
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Reposted by Raphael Laurenceau
Aude Bernheim @audeber.bsky.social · 21/07/2026
Out @cp-cellhostmicrobe.bsky.social, natural products meet bacterial immunity! We used genomics to identify lanthivirins: a family of >2,000 lanthipeptide BGCs that protect Actinobacteria against phages. Led by @hshomar.bsky.social & @mariegllm.bsky.social www.sciencedirect.com/science/arti...
sciencedirect.com
A family of lanthipeptides with anti-phage function
Bacteria produce natural products to adapt to their environments, with phage interactions as major ecological and evolutionary drivers. While some nat…
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Reposted by Raphael Laurenceau
Vivek Mutalik @vivekmutalik.bsky.social · 18/07/2026
www.cell.com/cell-reports... #phage #phagesky
cell.com
A receptor-centered approach identifies Lom as a LamB-bound superinfection exclusion factor in bacteriophage λ
Ge et al. develop a receptor-centered strategy to identify phage proteins that target host receptors during infection and discover the λ outer-membrane protein Lom. Lom binds and occludes LamB, blocki...
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Raphael Laurenceau @raphael-microb.bsky.social · 17/07/2026
www.science.org/doi/10.1126/...
science.org
Structure and evolution-guided design of minimal RNA-guided nucleases
The design of RNA-guided nucleases with properties not limited by evolution can expand programmable genome-editing capabilities. However, generating diverse multidomain proteins with robust enzymatic ...
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Reposted by Raphael Laurenceau
Rafael Pinilla-Redondo (Rafa) @rafomics.bsky.social · 16/07/2026
7/10 Our model 🧬👇 🔴OFF: RT-synthesized DNA scaffolds the ring and restrains the toxic RNase. 🟢ON: phage nucleases cut msDNA → ring collapses → RNase fires → host tRNAs shredded → infection blocked! 🛡️
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Reposted by Raphael Laurenceau
Arturo Carabias @arturocdr.bsky.social · 16/07/2026
🧬 Thrilled to share our latest @biorxiv-microbiol.bsky.social preprint! Here we find that Retron-IX build crazy supramolecular rings scaffolded by DNA molecules that sense phage infection! www.biorxiv.org/content/10.6... Read more below🧵! (1/X)
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Raphael Laurenceau @raphael-microb.bsky.social · 16/07/2026
www.nature.com/articles/s41...
nature.com
Phage host range: determinants, dynamics and applications - Nature Reviews Microbiology
Comprehensive assessment of the host range of phages is a prerequisite for their safe and effective use in multiple applications but is rarely undertaken. This Review outlines the molecular and ecolog...
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Reposted by Raphael Laurenceau
Manuel Kleiner @manuelkleiner.bsky.social · 10/07/2026
The type and amount of bacterial DNA carried by virus-like particles in the gut microbiome is simply mind-boggling. Amazing work by PhD candidate Jessie Maier in my group and collaborators @duerkoplab.bsky.social and Ben Callahan www.biorxiv.org/content/10.6...
biorxiv.org
Perturbations shift the composition of bacterial DNA carried by virus-like particles in the murine gut microbiome
Horizontal gene transfer (HGT) is a driving force in microbial evolution that allows community members to rapidly evolve to cope with environmental stressors and competition. Despite the importance of...
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Reposted by Raphael Laurenceau
Xavier Charpentier @labxc.bsky.social · 07/07/2026
#microsky New preprint from the lab! Widespread immune systems protect bacteria against conjugative plasmids www.biorxiv.org/content/10.6... Kudos to the extremely talented lead author Ludovic Poiré! Key contributions by @francoisrousset.bsky.social and also help from C. Lesterlin/TacC lab. 🧵⬇️
biorxiv.org
Widespread immune systems protect bacteria against conjugative plasmids
Conjugative plasmids are a class of mobile genetic elements capable of efficient transfer between bacterial cells. Although they can introduce beneficial traits such as antibiotic resistance to recipi...
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Raphael Laurenceau @raphael-microb.bsky.social · 06/07/2026
Californians, please make it count! Of all places, this is where it should start www.nytimes.com/2026/06/25/u...
nytimes.com
California Will Vote on a Billionaire Tax. Billionaires Aren’t Happy.
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Reposted by Raphael Laurenceau
The Upshot @upshot.nytimes.com · 06/07/2026
The internet’s largest stockpile of free knowledge is under threat from MAGA, A.I. and foreign autocrats. www.nytimes.com/2026/07/05/b...
nytimes.com
Wikipedia Is Battling for the Soul of the Internet
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Reposted by Raphael Laurenceau
Mariana Mazzucato @mazzucatom.bsky.social · 25/06/2026
The Common Good Economy: a new compass ➡️ marianamazzucato.com/books/the-co...
marianamazzucato.com
The Common Good Economy
Economics - Innovation - Inclusive Growth - Public Purpose | Mariana Mazzucato
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Reposted by Raphael Laurenceau
Simon Roux @simrouxvirus.bsky.social · 29/06/2026
🚨New paper alert 🚨 Here we tried to leverage an (incredible) metagenome time-series to better understand MGE diversity and activity in soil across decade(s). @scbagby.bsky.social has an amazing thread about this work with all the details - bsky.app/profile/scba...
nature.com
Mobile genetic elements shape microbial diversity and functions in thawing permafrost soils - Nature Microbiology
An 8-year soil meta-omic time series shows how mobile genetic elements shape permafrost microbial diversity and impact a range of functions, including carbon and nutrient cycling.
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Reposted by Raphael Laurenceau
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 27/06/2026
www.science.org/doi/10.1126/... 🦠💫💫💫
science.org
Antibiotics stimulate protein transfer to persister cells
The exchange of biological matter between bacterial cells drives adaptation and evolution. However, whether bacteria can exchange functional proteins remains unclear. In this work, we found that antib...
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Reposted by Raphael Laurenceau
Vivek Mutalik @vivekmutalik.bsky.social · 21/06/2026
www.sciencedirect.com/science/arti... #microbiomesky #microsky
sciencedirect.com
In situ genetic modification of gut bacteria
The crucial role of the gut microbiome in human health has driven a need to understand bacterial function within their complex native ecosystem. Howev…
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Reposted by Raphael Laurenceau
Tung Le @tunglejic.bsky.social · 18/06/2026
Spotlight on our recent work by @emmajbanks.bsky.social @pavol.bsky.social and team!!! @johninnescentre.bsky.social Thank you very much, @fnobrega.bsky.social, for this great piece!!!
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Alex Crits-Christoph @acritschristoph.bsky.social · 13/06/2026
This Visual-omics approach is kind of amazing: "We resolved each to sufficient resolution (2.8 and 3.6 Å) to predict the amino acid composition directly from the 3D electrostatic potential map"
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STCmicrobeblog @stcmicrobeblog.bsky.social · 13/06/2026
new pili for the lilliputians (CPR/Patescibacteria) 👇 #MicroSky
Figure 1. (D) Representative cryo-675
EM micrograph showing morphologically uniform filaments. Red and green arrowheads indicate the two distinct pilus types identified by 2D classification. Scale bar, 100 nm
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Raphael Laurenceau @raphael-microb.bsky.social · 11/06/2026
😲.
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Reposted by Raphael Laurenceau
Jesse Shapiro @bjesseshapiro.bsky.social · 05/06/2026
Cheap and easy method for nanopore sequencing phage DNA directly from plaques. Proud of lab members Brenna and Patrick for doing this work *with absolutely no help from me* !! www.nature.com/articles/s41...
nature.com
Same-day tagmentation PCR-based whole genome sequencing of bacteriophage genomes from a single plaque without DNA extraction - Scientific Reports
Scientific Reports - Same-day tagmentation PCR-based whole genome sequencing of bacteriophage genomes from a single plaque without DNA extraction
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Nature @nature.com · 29/05/2026
Catalogue entries for more than 100 antibodies sold by the research services and supply company Thermo Fisher Scientific contain images that have apparently been manipulated, according to a pair of science sleuths. go.nature.com/4wX4yej
go.nature.com
Science sleuths uncover more than 100 suspicious images in Thermo Fisher antibody catalogue
Scientists have long worried about the reliability of commercial antibodies, and the latest findings have sparked fresh concerns.
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Raphael Laurenceau @raphael-microb.bsky.social · 27/05/2026
www.prnewswire.com/news-release...
prnewswire.com
Biohub releases a world model of protein biology
/PRNewswire/ -- Biohub today announced the release of a world model of protein biology: a scientific engine for prediction, design, and discovery that can map...
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Reposted by Raphael Laurenceau
Rémi Fronzes @fronzeslab.bsky.social · 26/05/2026
New preprint. In S. sanguinis, a C5a peptidase-like protease (ScpH) polymerizes along eDNA, turning it into a catalytic biofilm scaffold. Great work from @robinanger.bsky.social in our lab, with Pelicic lab @lcbofficiel.bsky.social www.biorxiv.org/content/10.6...
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Susie Grigson @susiegriggo.bsky.social · 20/05/2026
Beyond thrilled that our paper ‘Co-migration of hundreds of microbial species over metres drives selection and promotes non-motile hitchhikers’ has been accepted in Nature Communications! 🎉🦠 (1/n) www.nature.com/articles/s41...
nature.com
Co-migration of hundreds of microbial species over metres drives selection and promotes non-motile hitchhikers - Nature Communications
Migration of microbial communities is poorly understood. Here, the authors use a meso-tube assay to show that hundreds of microbial species co-migrate over metre scales via chemotaxis, which restructu...
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Reposted by Raphael Laurenceau
Jakob T Rostøl @jakob-tr.bsky.social · 20/05/2026
Like a prophage being awakened from its slumber, the phage field has seen a lot of renewed activity during the last decade. Check out our new @natrevmicro.nature.com review on the temperate phage life cycle here to stay up-to-date 🧫🦠 www.nature.com/articles/s41...
nature.com
Revisiting the life cycle of temperate phages - Nature Reviews Microbiology
The life cycle of temperate bacteriophages involves lytic or lysogenic cycles and has historically served as a model for studying genetic regulation. This Review provides an updated overview of these ...
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Reposted by Raphael Laurenceau
Zach LaTurner @micronaut.bsky.social · 15/05/2026
The paper on my Ph.D. work is fully online! We used a ribozyme that barcodes 16S rRNA to track the transduction range of phage P1 in a synthetic community and real wastewater communities, while diving deeper into the unique range conferred by P1s two tail fibers. www.nature.com/articles/s41...
nature.com
Cross-order detection of bacteriophage transduction in microbial communities using RNA barcoding - Nature Communications
Bacteriophages are the most abundant life form on earth and can be applied to eliminate or engineer bacteria. Here, authors demonstrate RNA barcoding as a high throughput tool to measure bacteriophage...
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Raphael Laurenceau @raphael-microb.bsky.social · 14/05/2026
www.nature.com/articles/s41...
nature.com
The ecology of bacterial attachment to phytoplankton - Nature Microbiology
Here the authors review current understanding of the mechanistic marine microbial interactions that underpin large-scale ecosystem processes and biogeochemical cycling.
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Luuk Loeff @lloeff.bsky.social · 14/05/2026
Happy to share our latest pre-print on the Druantia defense system. We find that Type III Druantia uses a cooperative helicase-nuclease mechanism to sense and degrade replication-associated forked DNA structures. www.biorxiv.org/content/10.6... A🧵
biorxiv.org
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Raphael Laurenceau @raphael-microb.bsky.social · 10/05/2026
academic.oup.com/nar/article/...
academic.oup.com
Validate User
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Reposted by Raphael Laurenceau
Harris Wang @harriswang.bsky.social · 01/05/2026
1/ Excited to share our new paper in Science @science.org: “Toward life with a 19-amino acid alphabet through generative artificial intelligence design.” A great collab w/ Sergey's group @sokrypton.org at MIT @columbiasysbio.bsky.social science.org/doi/10.1126/... 🦠🧬🛠️🖥️💥
science.org
Toward life with a 19–amino acid alphabet through generative artificial intelligence design
Because all known living organisms are made from at least 20 canonical amino acids, the feasibility of life using a more simplified alphabet remains unclear. In this work, we leveraged computational d...
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Raphael Laurenceau @raphael-microb.bsky.social · 02/05/2026
A really cool method we are just starting to explore!
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Cress Lab @cresslab.bsky.social · 30/04/2026
Our lab is proud to present our latest work harnessing Bridge Recombinase for genome-scale editing in diverse bacteria, microbiome editing, and programmable horizontal gene transfer.
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Raphael Laurenceau @raphael-microb.bsky.social · 30/04/2026
www.nature.com/articles/s41...
nature.com
Prime assembly with linear DNA donors enables large genomic insertions - Nature
Prime assembly can initiate Gibson-like assembly in cells to generate gene insertions without double-stranded DNA breaks, recombinases or homology-directed repair.
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