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Isha Walawalkar, MPH

@walawalki.bsky.social
147 followers 273 following 5 posts

I’m just a girl in an RNA world [alternative splicing] MD-PhD student | NIH F30 Fellow @jax.org, @uconnresearch.bsky.social

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Reposted by Isha Walawalkar, MPH
Cedric Boeckx @cedricboeckx.bsky.social · 13/08/2026
2 great papers on species-specific developmental tempo now @cp-devcell.bsky.social Congrats @trayon.bsky.social @jamesbriscoe.bsky.social @ebisuyamiki.bsky.social & their teams 🧪 1. On protein degradation in neural progenitors 2. On differences in protein stability www.cell.com/developmenta...
cell.com
Proteasome-dependent protein degradation shapes developmental tempo in mouse and human neural progenitors
Why do mammalian species develop at different speeds? Nakanoh, Stamataki, et al. show that mouse neural progenitors have faster protein synthesis and proteasome-mediated degradation than human. Manipu...
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Reposted by Isha Walawalkar, MPH
Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 01/08/2026
Riboseek is a fast RNA/DNA search. More sensitive than nhmmer at 250x speed. Structure-aware realignment produces MSAs approaching rMSA quality. Plus 1.7M precomputed RNA MSAs, and an API to search your own 📄 www.biorxiv.org/content/10.6... 💾 github.com/steineggerla... 🌐 search.foldseek.com/riboseek
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Reposted by Isha Walawalkar, MPH
Nature @nature.com · 03/08/2026
A combination of drugs restores stem-cell function in mouse models of sickle-cell disease go.nature.com/4w8xMVH
go.nature.com
Sickle-cell disease linked to prematurely aged stem cells in mice
A combination of drugs restores stem-cell function in mouse models of the blood disorder.
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Reposted by Isha Walawalkar, MPH
Arnau Sebé-Pedrós @arnausebe.bsky.social · 03/08/2026
Happy to share the final version of our study on the evolution of chromatin states across eukaryotes, out today in @natgenet.nature.com Led by @crisnava.bsky.social and @seanamontgomery.bsky.social www.nature.com/articles/s41... Some highlights below
nature.com
Diversity and evolution of chromatin regulatory states across eukaryotes - Nature Genetics
This study introduces iChIP2, a low-input chromatin immunoprecipitation followed by sequencing method that profiles histone post-translational modifications (hPTMs) simultaneously across diverse eukar...
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Reposted by Isha Walawalkar, MPH
Kurianlab @kurianlab.bsky.social · 30/07/2026
www.nature.com/articles/s41... how cool!
nature.com
Intestinal stem cells count self-renewal divisions to switch multipotency - Nature
In Drosophila, cell fate switching in adult intestinal stem cells is determined through an epigenetic mechanism in which these cells count divisions, switching from producing enterocytes to producing ...
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Reposted by Isha Walawalkar, MPH
Lluis Montoliu @lluismontoliu.bsky.social · 28/06/2026
Frank Grosveld, born in 1948, passed away last Friday. He was a colossal scientist in the transcriptional control of gene expression during development and helped us understand the complex regulation of beta-globin genes. His work will remain as a reference. May he rest in peace.
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Reposted by Isha Walawalkar, MPH
Anders Sejr Hansen @andersshansen.bsky.social · 30/06/2026
Excited to see James' Genome-wide Absolute Quantification of Looping paper out in @natsmb.nature.com : www.nature.com/articles/s41... This has been in collaboration with @lucagiorgetti.bsky.social @leonidmirny.bsky.social @zechnerlab.bsky.social labs. Brief thread below on some key updates
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Reposted by Isha Walawalkar, MPH
Molecular Cell @cp-molcell.bsky.social · 18/06/2026
Nitric oxide drives proteomic diversity through alternative splicing
dlvr.it
Nitric oxide drives proteomic diversity through alternative splicing
Schindler et al. report that RNA-binding proteins undergo widespread S-nitrosylation at evolutionarily conserved sites. S-nitrosylation of the master splicing regulator PTBP1 alters RNA-binding properties to reprogram the transcriptome and proteome. Nitric oxide thereby coordinates gene and protein regulation in cellular physiology and disease.
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Reposted by Isha Walawalkar, MPH
Michaela Müller-McNicoll @mixmue.bsky.social · 17/06/2026
How can a splicing factor bind to thousands of exons but regulate only a few of them? In our new preprint, we show that SRSF6 resolves this paradox through two distinct binding modes. @lab-nmr.bsky.social & @julianvonehr.bsky.social. Check it out: www.researchsquare.com/article/rs-9...
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Reposted by Isha Walawalkar, MPH
Andrii Bugai @abugai.bsky.social · 17/06/2026
Check out our latest research, just published in Nature @nature.com @molbiolau.bsky.social @au.dk Molecular basis of polyadenylated RNA fate determination in the nucleus www.nature.com/articles/s41...
nature.com
Molecular basis of polyadenylated RNA fate determination in the nucleus - Nature
Biochemical, structural and cell biological analyses reveal that UAP56 (DDX39B) assembles with a TREX-2–like module that redirects non-functional polyadenylated RNAs from export to degradati...
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Reposted by Isha Walawalkar, MPH
Olga Anczukow @olgaanczukow.bsky.social · 12/06/2026
Could not have dreamed of working with a better group of people when I started 10 years ago! #RNA #cancer @jax.org
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Reposted by Isha Walawalkar, MPH
Nature @nature.com · 04/06/2026
Nature research paper: A natural depsipeptide antibiotic binds the E-site of the bacterial ribosome go.nature.com/3RMNwPW
go.nature.com
A natural depsipeptide antibiotic binds the E-site of the bacterial ribosome - Nature
Improved fractionation strategies can identify antibiotics with previously unseen scaffolds and mechanisms, exemplified by manikomycin from Streptomyces rimosus, which acts by targeting the E-site of the bacterial large ribosomal subunit.
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Reposted by Isha Walawalkar, MPH
Jonathan Coxhead @4130chromo.bsky.social · 05/06/2026
Review | Best Practices in Demographic Data Collection for Equity, Diversity, and Inclusion in Rare Disease Research: A Systematic Review www.gimjournal.org/article/S109...
gimjournal.org
Best Practices in Demographic Data Collection for Equity, Diversity, and Inclusion in Rare Disease Research: A Systematic Review
Rare diseases affect small, dispersed populations and are often studied through multisite designs where equity-relevant demographic data are essential for inclusive recruitment and accurate interpreta...
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Reposted by Isha Walawalkar, MPH
Jonathan Coxhead @4130chromo.bsky.social · 05/06/2026
Review | Genotype before phenotype? Reversing the diagnostic odyssey in genomic medicine www.sciencedirect.com/science/arti...
sciencedirect.com
Genotype before phenotype? Reversing the diagnostic odyssey in genomic medicine
For decades, the diagnosis of rare genetic disorders has relied on a phenotype-driven approach, often resulting in a prolonged “diagnostic odyssey.” T…
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Reposted by Isha Walawalkar, MPH
Molecular Cell @cp-molcell.bsky.social · 05/06/2026
In vivo single-cell ribosome profiling reveals cell-type-specific translational programs during aging
dlvr.it
In vivo single-cell ribosome profiling reveals cell-type-specific translational programs during aging
In vivo single-cell ribosome profiling reveals cell-type-specific translational landscapes across the epidermis and uncovers selective reprogramming of AP-1 subunit translation in aged stem cells, linking translational deregulation to stem cell aging.
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Reposted by Isha Walawalkar, MPH
tkomadina.bsky.social @tkomadina.bsky.social · 04/06/2026
Messenger RNA technology vaccinations work to help the body's T cells identify the tumor and kill it. Of course, HHS secretary, a lawyer, RFK Jr is opposed to it and canceled $500 million in research funds. www.belfercenter.org/research-ana... www.nbcnews.com/health/cance...
nbcnews.com
Pancreatic cancer mRNA vaccine shows lasting results in an early trial
Scientists caution that more research is needed, but nearly all of the patients who responded to the personalized vaccine are still alive six years later.
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Reposted by Isha Walawalkar, MPH
JAX Genomic Education @jaxeducation.bsky.social · 22/05/2026
🧬🤝📊 Researchers and industry leaders came together at @jax.org’s #LRSW2026 to share emerging scientific insights and apply new approaches in long-read sequencing through expert sessions and hands-on training in computational and wet-lab methods. Many thanks to our participants, speakers & sponsors!
Group photo of participants of the Long-Read Sequencing Workshop at The Jackson Laboratory's Farmington, Connecticut campus.Participants discussing scientific posters during a poster session at the Long-Read Sequencing Workshop at The Jackson Laboratory's Farmington, Connecticut campus.Participants discussing scientific posters during a poster session at the Long-Read Sequencing Workshop at The Jackson Laboratory's Farmington, Connecticut campus.Participants discussing scientific posters during a poster session at the Long-Read Sequencing Workshop at The Jackson Laboratory's Farmington, Connecticut campus.
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Reposted by Isha Walawalkar, MPH
Olga Anczukow @olgaanczukow.bsky.social · 30/05/2026
Great science and fun reunion of Krainer Lab F1 and others #RNA2026 @rnasociety.bsky.social @chaolinzhang.bsky.social @hastingslab.bsky.social @walawalki.bsky.social
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Isha Walawalkar, MPH @walawalki.bsky.social · 30/05/2026
Grateful for the opportunity to present a glimpse of my thesis work on #poisonexons in pluripotent stem cells @rnasociety.bsky.social @jrrnascientists.bsky.social @jax.org #AnczukowLab #RNA2026
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Isha Walawalkar, MPH @walawalki.bsky.social · 29/05/2026
@jrrnascientists.bsky.social @rnasociety.bsky.social R-N-A pins to give my tRNA pin some company ! #RNA2026
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Reposted by Isha Walawalkar, MPH
Nature @nature.com · 28/05/2026
Spatial maps of gene expression in whole human embryos across several weeks of early development offer insights into the molecular programs that drive organogenesis. go.nature.com/3S5QqPG
go.nature.com
Organ formation in early human embryos captured in spatial cell atlas
Spatial maps of gene expression in whole human embryos across several weeks of early development offer insights into the molecular programs that drive organogenesis.
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Reposted by Isha Walawalkar, MPH
Burge Lab @daspliceisright.bsky.social · 07/11/2025
Check out this article about the latest publication from our lab, highlighting our new method, KATMAP, for understanding and predicting gene splicing news.mit.edu/2025/katmap-...
news.mit.edu
A new way to understand and predict gene splicing
The KATMAP model, developed by researchers in the Department of Biology, can predict alternative cell splicing, which allows cells to create endless diversity from the same sets of genetic blueprints.
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Reposted by Isha Walawalkar, MPH
Gioia Quarantani @gioia-quarantani.bsky.social · 26/05/2026
1\ Excited to finally share some of my PhD work: OpenSplice! We measured how >590,000 mutations affect exon inclusion across 600 human exons, creating a resource to study splicing regulation, benchmark variant effect predictors, and support variant interpretation.
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Isha Walawalkar, MPH @walawalki.bsky.social · 28/05/2026
Keynote by Nahum Sonenberg on the history of the study of the 5’ mRNA cap #RNA2026 @rnasociety.bsky.social @jrrnascientists.bsky.social
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Reposted by Isha Walawalkar, MPH
Aaron and the Hoskins Lab at UW Madison @uwmadisonrna.bsky.social · 25/05/2026
OpenSplice: the impact of half a million mutations on the alternative splicing of 600 human exons Gioia Quarantani et al. www.biorxiv.org/content/10.6...
biorxiv.org
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Reposted by Isha Walawalkar, MPH
Olga Anczukow @olgaanczukow.bsky.social · 22/05/2026
What is the role of #poison-exon in regulating splicing factors in stem cells and development? Check out new work from Nathan Leclair and Mattia Brugiolo and many others in my lab @jax.org #RNA #splicing www.biorxiv.org/content/10.6...
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Reposted by Isha Walawalkar, MPH
Molecular Cell @cp-molcell.bsky.social · 21/05/2026
Online Now: Nitric oxide drives proteomic diversity through alternative splicing Online now:
dlvr.it
Nitric oxide drives proteomic diversity through alternative splicing
Schindler et al. report that RNA-binding proteins undergo widespread S-nitrosylation at evolutionarily conserved sites. S-nitrosylation of the master splicing regulator PTBP1 alters RNA-binding properties to reprogram the transcriptome and proteome. Nitric oxide thereby coordinates gene and protein regulation in cellular physiology and disease.
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Reposted by Isha Walawalkar, MPH
Nature Reviews Cancer @natrevcancer.nature.com · 15/05/2026
dlvr.it
Stem cells as an essential mediator of the exercise–tumorigenesis link
Nature Reviews Cancer, Published online: 14 May 2026; doi:10.1038/s41568-026-00933-zAerobic exercise influences physiology and generally reduces cancer risk, yet the mechanisms connecting these effects remain incompletely understood. In this Perspective, Zhuang and colleagues outline a model in which exercise-induced physiological adaptation regulates adult stem cell behaviour in ways that limit transformation and tumour initiation.
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Reposted by Isha Walawalkar, MPH
bioRxivpreprint @biorxivpreprint.bsky.social · 22/05/2026
Splicing of ultraconserved poison exons controls mitotic fidelity and stem cell viability www.biorxiv.org/content/10.64898/20…
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Reposted by Isha Walawalkar, MPH
Karousis Lab @karousislab.bsky.social · 24/02/2026
A very exciting NMD story 🤩Congratulations to the team!
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Reposted by Isha Walawalkar, MPH
Mathieu Lupien @matlupien.bsky.social · 05/05/2026
Excited to share our @natgenet.nature.com study showing that epigenetically rewired transposable elements control AML leukemia stem cell properties and patient outcome. Grateful to the team & collaborators. www.nature.com/articles/s41...
nature.com
Transposable elements shape stemness in normal and leukemic hematopoiesis - Nature Genetics
This study identifies distinct transposable element subfamilies as genetic determinants of stemness properties in normal and leukemic stem populations with clinical implications for patients with acut...
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Reposted by Isha Walawalkar, MPH
Vijay G. Sankaran @bloodgenes.bsky.social · 01/05/2026
🚨 Excited to share a new paper in Cell! Human genetics led us to HOTSCRAMBL, a HOXA-locus lncRNA that regulates 🩸#stemcell self-renewal and HOXA9 splicing, with implications for AML. Amazing work by @lvchosen1.bsky.social with many others! www.cell.com/cell/fulltex...
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Reposted by Isha Walawalkar, MPH
Maxim Greenberg @maxvcg.bsky.social · 01/05/2026
This a very important, and extremely well-executed study from Ralph Grand’s group @uniheidelberg.bsky.social. Congrats to all the authors! www.biorxiv.org/content/10.6...
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Reposted by Isha Walawalkar, MPH
Molecular Cell @cp-molcell.bsky.social · 16/04/2026
LENG8 mediates RNA nuclear retention and degradation in eukaryotes
dlvr.it
LENG8 mediates RNA nuclear retention and degradation in eukaryotes
Tian et al. identify LENG8 as a conserved RNA quality-control factor that prevents nuclear export of misprocessed mRNAs and noncoding RNAs. This study provides fundamental insight into how the surveillance machinery monitors RNA processing status to determine nuclear retention, degradation, or export.
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Reposted by Isha Walawalkar, MPH
Fran Supek @fransupek.bsky.social · 26/03/2026
✂️🧬preprint! "Quantitative prediction of nonsense-mediated #mRNA decay across human genes by #genomic language #model & large-scale mutational scanning" Fantastic teamwork by @IgnasiToledano 👨‍🔬and @MarcellVeiner👨‍💻. We combine massive experiment and sequence AI to elucidate NMD👇
AI-generated cartoon of a computational biologist and wet-lab biologist collaborating on a research project
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Reposted by Isha Walawalkar, MPH
Science Magazine @science.org · 28/02/2026
In a new Science study, researchers report on transcriptional adaptation, a dual feedback and feedforward mechanism that uses genetic redundancy to compensate for mutations in protein-coding genes. Learn more in a new #SciencePerspective: scim.ag/4ryeXtN
scim.ag
Keeping cells fit
Fragments of aberrant cytoplasmic mRNA pair with nuclear RNAs to augment transcription
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Reposted by Isha Walawalkar, MPH
Milo B. Fasken, Ph.D. @milofasken.bsky.social · 27/02/2026
www.nature.com/articles/s41...
nature.com
Composite SMG5-SMG6 PIN domain formation is essential for NMD - Nature Communications
Execution of mRNA cleavage in nonsense-mediated decay remained elusive. The authors show that SMG5 complements SMG6 to form a highly active, composite endonuclease with expanded catalytic center that ...
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Reposted by Isha Walawalkar, MPH
Zebrafish Rock! @zebrafishrock.bsky.social · 18/02/2026
Big congrats to Dr. Len Zon for being awarded the 2026 @marchofdimes.org Richard B Johnston Jr, MD Prize for his work in #devbio. His pioneering research has illuminated how blood develops in embryos, leading to a deeper understanding of genetic blood diseases. www.marchofdimes.org/about/news/r... 🧪
marchofdimes.org
Renowned Developmental Biologist Wins March of Dimes Prize
March of Dimes names Dr. Leonard Zon winner of the 2026 Richard B. Johnston Jr., MD Prize for breakthroughs in developmental biology and treatments for blood disorders.
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Reposted by Isha Walawalkar, MPH
Di Jiang @dijiang319.bsky.social · 14/02/2026
@science.org Keeping cells fit | Science www.science.org/doi/10.1126/...
science.org
Keeping cells fit
Fragments of aberrant cytoplasmic mRNA pair with nuclear RNAs to augment transcription
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Reposted by Isha Walawalkar, MPH
Alessandro Scacchetti @metalsga.bsky.social · 15/01/2026
Amazing: TimeVaults! www.science.org/doi/10.1126/...
science.org
A genetically encoded device for transcriptome storage in mammalian cells
Understanding how cells make decisions over time requires the ability to link past molecular states to future phenotypic outcomes. We present TimeVault, a genetically encoded system that records and s...
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Reposted by Isha Walawalkar, MPH
Edoardo Gianni @edogia.bsky.social · 13/02/2026
How could a simple self-replicating system emerge at the origins of life? RNA polymerase ribozymes can replicate RNA, but existing ones are so large that their self-replication seems impossible. Could they be smaller? Excited to share our latest work in @science.org on a new small polymerase. 1/n
science.org
A small polymerase ribozyme that can synthesize itself and its complementary strand
The emergence of a chemical system capable of self-replication and evolution is a critical event in the origin of life. RNA polymerase ribozymes can replicate RNA, but their large size and structural ...
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Reposted by Isha Walawalkar, MPH
Di Jiang @dijiang319.bsky.social · 14/02/2026
@science.org Mechanisms linking cytoplasmic decay of translation-defective mRNA to transcriptional adaptation | Science www.science.org/doi/10.1126/...
science.org
Mechanisms linking cytoplasmic decay of translation-defective mRNA to transcriptional adaptation
Transcriptional adaptation (TA) is a genetic robustness mechanism through which mutant messenger RNA (mRNA) decay induces sequence-dependent up-regulation of so-called adapting genes. How cytoplasmica...
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Reposted by Isha Walawalkar, MPH
Dmitry Kretov @dmitry-kretov.bsky.social · 15/02/2026
Happy to share the first review article from our lab! We discuss the landscape of available high-throughput approaches for profiling RNA–protein interactions in vitro and in vivo. We hope it will be useful when designing your next experiment. www.tandfonline.com/doi/full/10.... #RNAsky
tandfonline.com
Decoding RNA–protein interactions using high-throughput methods
RNA-binding proteins (RBPs) constitute a diverse class of proteins essential for every stage of the gene expression process. Many RBPs are also linked to human diseases and pathologies. Understandi...
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Reposted by Isha Walawalkar, MPH
Dmitry Kretov @dmitry-kretov.bsky.social · 06/02/2026
I am thrilled to share our paper introducing RBPscan, a novel approach to profile RNA–protein interactions in living cells. Free access link at the end ⬇️ 🧵 1/ www.cell.com/molecular-ce...
cell.com
RBPscan: A quantitative in vivo tool for profiling RNA-binding protein interactions
Kretov et al. introduce RBPscan, an RNA-editing-based platform that measures how RNA-binding proteins engage their targets in living cells. This approach quantifies the binding strength of protein-RNA...
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Reposted by Isha Walawalkar, MPH
David Bartel's Lab @bartellab.bsky.social · 23/01/2026
We’re excited to share our latest preprint on the mechanism of excised linear intron stabilization in yeast! This work was led by PhD student @glennli.bsky.social and was a wonderful collaboration with @maxewilkinson.bsky.social. Link: www.biorxiv.org/content/10.6... (1/4)
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Reposted by Isha Walawalkar, MPH
Molecular Cell @cp-molcell.bsky.social · 28/01/2026
Online Now: Coordinating mRNA maturation: The U1 relay model Online now:
dlvr.it
Coordinating mRNA maturation: The U1 relay model
Yoon et al. provide a broad overview of how all the RNA processing steps are intimately linked to transcription and to one another. They propose a U1 relay model as a general framework for understanding the mechanism for coupling transcription and RNA processing.
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Reposted by Isha Walawalkar, MPH
Science Magazine @science.org · 04/02/2026
Unrepaired DNA-protein crosslinks cause a process that leads to premature aging and embryonic lethality in mice. The findings in Science reveal a previously unrecognized link between defective DNA repair and immune-driven inflammatory disease. scim.ag/4qdZWf9
science.org
DNA-protein cross-links promote cGAS-STING–driven premature aging and embryonic lethality
DNA-protein cross-links (DPCs) are highly toxic DNA lesions that block replication and transcription, but their impact on organismal physiology is unclear. We identified a role for the metalloprotease...
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Reposted by Isha Walawalkar, MPH
The Jackson Laboratory @jax.org · 23/01/2026
A new stem cell–based platform developed at JAX is shedding light on one of the biggest mysteries in genetics: why the same disease-causing mutation can affect people in dramatically different ways—from severe symptoms to no symptoms at all.🧪 🧫 🧠 🔬 go.jax.org/stem-cells-autism
What can stem cells tell us about autism and other developmental brain disorders? Developed by JAX Professor Martin Pera, a new stem cell–based platform developed at JAX uses induced pluripotent stem cells (iPSCs) from eight genetically distinct strains of mice to unlock one of the biggest mysteries in genetics. 

Why does the same genetic mutation have little to no effect in one person while have potentially causing a devastating disease in another? 





Image (top) - Brain cells created from induced pluripotent stem cells shown under a microscope in The Pera Lab at JAX.

Text below reads: This new platform allows scientists to grow brain cells reliably from each strain, a major technical advance that opens the door to studying many other disease-linked genes in a more realistic and scalable way, opening new possibilities for studying disease-linked genes in more realistic and predictive ways.Pera focused on a gene called DYRK1A, which plays a key role in brain development and is associated with conditions like autism, microcephaly, and intellectual disability.

He introduced the same DYRK1A mutation into iPSCs from each mouse strain and coaxed those stem cells to form neurons. Despite having the exact same genetic change, the neurons responded very differently depending on their genetic background. Some looked like healthy human brain cells. Others resembled neurons seen in patients with autism or microcephaly.
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Reposted by Isha Walawalkar, MPH
Stella Hurtley @smhsci.bsky.social · 22/01/2026
Out now in @science.org Endogenous retroviruses synthesize heterologous chimeric RNAs to reinforce human early embryo development | Science www.science.org/doi/10.1126/...
science.org
Endogenous retroviruses synthesize heterologous chimeric RNAs to reinforce human early embryo development
Zygotic genome activation (ZGA) failure leads to developmental arrest and poses a clinical challenge to women’s fertility. We observed that human embryos arresting at the eight-cell ZGA stage exhibite...
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Reposted by Isha Walawalkar, MPH
Iain Cheeseman @iaincheeseman.bsky.social · 23/01/2026
First preprint of the year! New work from @jimmy-ly.bsky.social revealing unexpected roles for 5' UTR length in controlling alternate translational isoforms - important implications for both physiological cell function and rare disease. Small changes -> big impacts. www.biorxiv.org/content/10.6...
biorxiv.org
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