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Jonathan Coxhead

@4130chromo.bsky.social
1.2K followers 768 following 983 posts

Head of #Genomics Core Facility at NCL 🧬 Single-Cell 🧬 Spatial-Transcriptomics 🧬 Next-Generation Sequencing 🧬 MTBing 🚵🏻‍♂️ Dad & Husband 👨‍👩‍👧‍👦 | ⚽🔴⚪ SAFC 🎫 | 🦋 own views.

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Reposted by Jonathan Coxhead
Butterfly Conservation @savebutterflies.bsky.social · 8h
Hello October! Or should that be Moth-tober? 🎃🦋 With autumn well underway, keep an eye out for these butterflies and moths in your gardens and local green spaces.
Butterfly Conservation's Butterflies and Moths to see in October: Speckled Wood, Brimstone moth, Comma, Frosted Orange, Peacock, Angle Shades, Red Admiral, Light Emerald, and Wall.
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Reposted by Jonathan Coxhead
Times Higher Education (THE) @timeshighered.bsky.social · 8h
Less than a fifth of students undertaking STEM PhDs are from low socio-economic backgrounds, a report has found, resulting in disadvantaged students “being lost from the pipeline”, reports Juliette Rowsell #highered #STEM #disadvantage #edusky #PhDs ow.ly/isxB50ZTbQZ
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The Onion @theonion.com · 20h
IT Guy Had Affinity For Cords At Young Age theonion.com/it-guy-had-affinity-fo…
IT Guy Had Affinity For Cords At Young Age
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Jonathan Coxhead @4130chromo.bsky.social · 30/09/2026
Arrived at work this morning to find these on my desk, probably cheered me up 😊🍎 Thank you, KJ 👍
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Reposted by Jonathan Coxhead
Cold War Steve @coldwarsteve.bsky.social · 29/09/2026
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Domestique @domestiquecycling.com · 29/09/2026
🇪🇷 Eritrea wearing mismatched kit: CHF 1,000 fine 🇪🇸 Spanish coach driving like a rally driver: CHF 1,000 fine 🤔 📰 www.domestiquecycling.com/en/news/girm... 📸 Cor Vos
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Carole Cadwalladr @carolecadwalla.bsky.social · 28/09/2026
NEW: Meet the real AI ‘rogue agent’: Lord Watson of Palantir. I am sick to the teeth of this current AI hype cycle & its perversion of language. The only thing going ‘rogue’ right now are AI boosters, a gullible & compliant press & a Labour Lord 1/ broligarchy.substack.com/p/meet-the-r...
broligarchy.substack.com
Meet the real AI “rogue agent”: Lord Tom Watson
A Labour leader is out of control. The world needs a containment strategy now
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Reposted by Jonathan Coxhead
THE NERVE @thenerve.news · 28/09/2026
“Same goes for the claims that these companies are already profitable… [essentially] the companies are claiming that they are so cool that their profitability can only be measured using a novel, secret form of mathematics.” www.thenerve.news/p/cory-docto...
thenerve.news
Cory Doctorow: AI’s big beasts aren’t really scared of their products. They’re scared of their competition
The US giants would love to stop battling each other and be protected from China – and they might have hit on just the narrative to make that possible, writes our tech columnist
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Reposted by Jonathan Coxhead
Norman Records @normanrecords.com · 27/09/2026
ALBUM OF THE WEEK: 'Oblique' by Ghost Dubs Blurred ambient dub and murky, smudged, and industrial-shaded dub techno with deep bass, gritty textures, and cavernous atmospheres. www.normanrecords.com/features/bes...
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Jonathan Coxhead @4130chromo.bsky.social · 27/09/2026
🛋️📺🍺 UCI 🌈 #Montréal2026 👌😁
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Reposted by Jonathan Coxhead
Julian Hughes @penrhynbirder.bsky.social · 25/09/2026
Do you have nature records in notebooks that you never look at and wonder what to do with? I've transcribed 10,000 records from the 1960-70s from a Welsh ornithological legend into @birdtrack.bsky.social and @cofnod.org.uk. And it was fascinating... #BirdingWales www.cofnod.org.uk/news/natural...
cofnod.org.uk
Naturalists' Notebooks: a treasure trove - Cofnod
Naturalists' Notebooks: a treasure trove
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Jonathan Coxhead @4130chromo.bsky.social · 27/09/2026
Out with TeamFB's elite, this morning - Michael, Kev, and Si - it's been a while 🚴🚴‍♂️🚴🚴‍♂️☕🍰 You can see how happy I am about it 🤦😂
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Jonathan Coxhead @4130chromo.bsky.social · 26/09/2026
Review | Single-cell sequencing in molecular diagnostics: Transformative yet untapped potential www.frontiersin.org/journals/gen...
frontiersin.org
Frontiers | Single-cell sequencing in molecular diagnostics: Transformative yet untapped potential
Single-cell sequencing (SCS) techniques have the potential to offer precise insights into cellular diversity by revealing unique genetic and transcriptomic p...
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Jonathan Coxhead @4130chromo.bsky.social · 26/09/2026
Review | Tutorial: interrogating biology using organoid technologies www.nature.com/articles/s41...
nature.com
Tutorial: interrogating biology using organoid technologies - Nature Protocols
This tutorial overviews the use of organoid technologies across a broad spectrum of applications, from investigating cell fate decisions and cell–cell interactions to studying genetic diseases, specie...
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Jonathan Coxhead @4130chromo.bsky.social · 26/09/2026
International experiences of genomic newborn screening: Lessons from over 10,800 newborns www.cell.com/ajhg/fulltex...
cell.com
International experiences of genomic newborn screening: Lessons from over 10,800 newborns
This perspective summarizes early experiences from genomic newborn screening studies, totaling over 10,800 infants from the US, Belgium, and Australia. While these provide data on technical feasibilit...
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Jonathan Coxhead @4130chromo.bsky.social · 26/09/2026
🎵 Moodymann - Black Mahogani 🔊🔊
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Reposted by Jonathan Coxhead
Chris Weatherspoon @cweatherspoon.bsky.social · 26/09/2026
So much to say and so much still to comprehend but, at root, this is what happens when a sport pursues money above all else, fairness be damned. When anyone is welcome provided their pockets are deep enough. This should be a reckoning for English - and world - football
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Jonathan Coxhead @4130chromo.bsky.social · 25/09/2026
www.bbc.co.uk/news/article... Special thanks to Dr Katherine Johnson from my team and IT colleague Arron Scott who have worked with @minomatt.bsky.social to ensure the sequencing and data analysis runs smoothly @newcastleuni.bsky.social @nanoporetech.com @diagnosticsne.bsky.social
bbc.co.uk
Newcastle rolls out 'revolutionary' brain tumour diagnosis test
Newcastle Hospitals is among five centres using a rapid new test of brain tumour diagnosis.
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Reposted by Jonathan Coxhead
Human Rights Watch @hrw.org · 25/09/2026
Zara Larsson has cancelled her upcoming performance at the Abu Dhabi Grand Prix. Might it have something to do with the UAE's role in helping to fuel war crimes and crimes against humanity in Sudan?
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Jonathan Coxhead @4130chromo.bsky.social · 25/09/2026
Tremendous work by @minomatt.bsky.social and the team 🫡 can't wait to see this take off 🧬🧬 www.bbc.co.uk/news/article...
bbc.co.uk
Brain tumour diagnosis cut from weeks to hours with rapid new NHS test
The test means patients can start treatment sooner and are spared weeks of uncertainty.
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Jonathan Coxhead @4130chromo.bsky.social · 22/09/2026
Go for a swim or make some noise? Make some noise 👍
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Jonathan Coxhead @4130chromo.bsky.social · 22/09/2026
youtube.com/watch?v=kqCt...
youtube.com
Brian Brobbey's First 10 Premier League Goals for Sunderland!
YouTube video by Sunderland AFC
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Reposted by Jonathan Coxhead
Nicolas Robine 🇪🇺🇫🇷🇺🇸 @nicorobine.bsky.social · 22/09/2026
I propose Super Terrific Ultra Platinium Intelligence... Deluxe!
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Nick Loman @pathogenomenick.bsky.social · 22/09/2026
Folks - if you're interested in how machine learning/AI can be used for microbial genomics, microbiome and metagenomics studies - please join us for a workshop in Birmingham on Thursday 8th October organised with CLIMB & NVIDIA. www.climb.ac.uk/blog/2026/09...
climb.ac.uk
Call for Applications: GPU-Accelerated Computing for Microbiome and Metagenomic Research · CLIMB
CLIMB is a cloud computing infrastructure for microbial bioinformatics — notebook servers, shared storage and reproducible workflows for genomics, metagenomics and pathogen surveillance researchers ac...
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Slimline Salamander @keith-85.bsky.social · 22/09/2026
I'm old enough to remember when the FIFA peace prize actually meant something.
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Jonathan Coxhead @4130chromo.bsky.social · 22/09/2026
Crepuscular rays at sunrise and a massive double rainbow in the West. I feel like I've walked out the front door into a children's drawing, this morning 😊🌄🌈
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Jonathan Coxhead @4130chromo.bsky.social · 20/09/2026
Brian Brobbey, though 😂♥️🤍
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Jonathan Coxhead @4130chromo.bsky.social · 20/09/2026
Red Admiral at Sessay Church @savebutterflies.bsky.social
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Jonathan Coxhead @4130chromo.bsky.social · 20/09/2026
Sunday lunch 🥧🍺 at The Fauconberg, Coxwold, North Yorkshire 👍
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Reposted by Jonathan Coxhead
THE NERVE @thenerve.news · 20/09/2026
NEW Stewart Lee column ‘Danny Tommo’ and his men of fighting age seek their Passport to Piddington www.thenerve.news/p/stewart-le...
"Piddington is about to be invaded by the very worst Britons this country has to offer
Stewart Lee on the hamlet that voted to secede from the UK"

Stylised green and orange image of sign reading ‘Principality of Piddington’, in a field
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Jonathan Coxhead @4130chromo.bsky.social · 19/09/2026
A systematic benchmark of batch effect correction methods for spatial transcriptomics link.springer.com/article/10.1...
link.springer.com
A systematic benchmark of batch effect correction methods for spatial transcriptomics - Genome Biology
Background Spatial transcriptomics enables high-resolution profiling of gene expression within tissue slices, but its reliability is often compromised by technical batch effects that obscure biologica...
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Jonathan Coxhead @4130chromo.bsky.social · 19/09/2026
iPscDB: a comprehensive platform for plant single-cell transcriptomic data integration and analysis academic.oup.com/nar/article/...
academic.oup.com
iPscDB: a comprehensive platform for plant single-cell transcriptomic data integration and analysis
Abstract. The rapid advancement of single-cell technologies has significantly enhanced our ability to investigate cellular heterogeneity within plant tissu
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Jonathan Coxhead @4130chromo.bsky.social · 19/09/2026
Ten quick tips for spatial transcriptomics analysis dx.plos.org/10.1371/jour...
dx.plos.org
Ten quick tips for spatial transcriptomics analysis
Author summary Spatial transcriptomics (ST) lets researchers measure gene expression while preserving the tissue location of each measurement. Where a cell sits, and which cells surround it, shape how...
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Jonathan Coxhead @4130chromo.bsky.social · 19/09/2026
Living with a rare disease: Why lived experience must shape research journals.plos.org/plosmedicine...
journals.plos.org
Living with a rare disease: Why lived experience must shape research
In this Perspective, Gemma Whyatt and Jodi Whitehouse—two women living with the rare condition Congenital Melanocytic Naevus—outline why lived experience must shape rare disease research from the outs...
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Jonathan Coxhead @4130chromo.bsky.social · 19/09/2026
Feed the microbiome, repair the gut | PNAS www.pnas.org/doi/10.1073/...
pnas.org
Feed the microbiome, repair the gut | PNAS
Feed the microbiome, repair the gut
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Jonathan Coxhead @4130chromo.bsky.social · 19/09/2026
Review | Gene regulatory mechanisms downstream of DNA methylation www.nature.com/articles/s41...
nature.com
Gene regulatory mechanisms downstream of DNA methylation - Nature Reviews Genetics
In this Review, Buckley et al. discuss how DNA methylation is interpreted in mammals and plants, focusing on the reader proteins and transcription factors that bind to methylated DNA and the downstrea...
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Jonathan Coxhead @4130chromo.bsky.social · 19/09/2026
🎵 DJ-Kicks: Sofia Kourtesis 🔊🔊
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Reposted by Jonathan Coxhead
Wendy Bickmore @wbickmor.bsky.social · 19/09/2026
"Good growth in every postcode" (Andy Burnham, 2026) Not much evidence of that in the latest UK Life Sciences Statistics. www.gov.uk/government/s...
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Jonathan Coxhead @4130chromo.bsky.social · 19/09/2026
Compelling viewing (not just this but everything on this lad's channel) - also 🤐=👌 youtube.com/watch?v=M94p...
youtube.com
This Might Be the Best Carbonara Recipe on YouTube
YouTube video by Denis Prokopyev
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Reposted by Jonathan Coxhead
Hoodlum 🇺🇸 @nothoodlum.bsky.social · 18/09/2026
Obama: “Imagine if I had pulled Fox News’ credentials from the White House press corps. You’re laughing, but this is what’s happening. It’s unimaginable that the same parties that are silent right now would have tolerated behavior like that from me.” Clip courtesy @meidastouch.com
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Reposted by Jonathan Coxhead
Norman Records @normanrecords.com · 16/09/2026
CLASSICS: 'Endtroducing…..' by DJ Shadow DJ Shadow's debut album and undisputed instrumental hip-hop classic was released today in 1996. Happy 30th to one of the greatest records ever made. www.normanrecords.com/records/2174...
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Jonathan Coxhead @4130chromo.bsky.social · 16/09/2026
Cheers, Genome Science UK and thank you Manchester! 🍺 Another fantastic meeting, brilliant sponsors, and excellent speakers. Above all one of the best meetings in the calendar for catching up with old genomics friends and as ever, making new ones. See you all next year 🧬
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Jonathan Coxhead @4130chromo.bsky.social · 13/09/2026
🎵 James - One Man Clapping 🔊🔊
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Jonathan Coxhead @4130chromo.bsky.social · 13/09/2026
PCRpanel: automated design of ultra-multiplex PCR panels for targeted amplicon sequencing link.springer.com/article/10.1...
link.springer.com
PCRpanel: automated design of ultra-multiplex PCR panels for targeted amplicon sequencing - BMC Bioinformatics
Background Ultra-multiplex PCR has become essential for targeted amplicon sequencing in molecular biology and clinical genetics. Methods We implemented PCRpanel, a command-line Java application with a...
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Jonathan Coxhead @4130chromo.bsky.social · 13/09/2026
Systems-level modelling of cell migration using spatially-resolved single-cell data link.springer.com/article/10.1...
link.springer.com
Systems-level modeling of cell migration using spatially-resolved single-cell data - BMC Bioinformatics
Background The ability to capture cellular dynamics at high spatial and molecular resolution is crucial for understanding complex biological processes, including development, tissue remodeling, and di...
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Jonathan Coxhead @4130chromo.bsky.social · 13/09/2026
Towards a Robust cell-free DNA Isolation Protocol for NGS Applications in a Clinical Molecular Diagnostics Setting www.jmdjournal.org/article/S152...
jmdjournal.org
Towards a Robust cell-free DNA Isolation Protocol for NGS Applications in a Clinical Molecular Diagnostics Setting
Cell-free DNA (cfDNA), released from apoptotic and necrotic cells into body fluids, is a non-invasive source of genetic information for disease prediction, diagnosis, and monitoring. However, its low ...
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Jonathan Coxhead @4130chromo.bsky.social · 13/09/2026
Successful early-career scientists rely on network of mentors www.nature.com/articles/d41...
nature.com
Successful early-career scientists rely on network of mentors
Large networks are particularly beneficial to researchers in under-represented groups.
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Jonathan Coxhead @4130chromo.bsky.social · 13/09/2026
🎵 MANAO - Re:Dux 🔊🔊
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Jonathan Coxhead @4130chromo.bsky.social · 12/09/2026
Back at the SoL ♥️🤍⚽ #HawayTheLads
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Reposted by Jonathan Coxhead
Newcastle University @newcastleuni.bsky.social · 12/09/2026
We're thrilled to be awarded a University Mental Health Charter Award by leading mental health charity @studentmindsorg.bsky.social 👏 The award recognises good practice & supports ongoing development in the area of mental health & wellbeing in higher education. bit.ly/4zZVpTD #WeAreNCL
A person is smiling outdoors, wearing a light blue shirt. The text on the image reads, "Newcastle University has been recognised with a University Mental Health Charter Award." Lush greenery is visible in the background.A person with short auburn hair and glasses is smiling while seated indoors. They are wearing a blue jacket and a lanyard. The background is softly blurred. Overlaid text reads, "This award is wonderful recognition of our whole-university approach to student and colleague mental health and wellbeing and reflects years of dedication." The name and title, "Sally Ingram MBE, Director of Health and Wellbeing Services," are included at the bottom.
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