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Miki Ebisuya

@ebisuyamiki.bsky.social
1.8K followers 315 following 116 posts

Synthetic developmental biologist at PoL TU Dresden. Cross-species comparison and manipulation of the ORGANOID ZOO. physics-of-life.tu-dresden.de/team/…

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Miki Ebisuya @ebisuyamiki.bsky.social · 09/10/2026
Epigenetic insights into extreme longevity in the world’s oldest terrestrial animal, Jonathan | Science Advances www.science.org/doi/10.1126/...
science.org
Epigenetic insights into extreme longevity in the world’s oldest terrestrial animal, Jonathan
Aldabra giant tortoises (Aldabrachelys gigantea) are exceptionally long-lived. We sequenced the genome and methylome of Jonathan, a 194-year-old Aldabra, to explore the molecular basis of his longevit...
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Thea F. Rogers @theafrogers.bsky.social · 09/10/2026
🧵 Out today in Nature Communications! How did an ancient reshuffling of the genome shape 3D genome architecture and gene regulation in squid, cuttlefish & octopus? 🦑🐙 We combined Micro-C, RNA-seq & ATAC-seq across species, developmental stages & tissues. doi.org/10.1038/s41467-026-77625-7
doi.org
Genome reorganisation and expansion shape 3D genome architecture and define a distinct regulatory landscape in coleoid cephalopods - Nature Communications
How genome organisation contributes to the evolution of biological complexity is poorly understood. This study shows evolutionary changes in 3D genome architecture rewires gene regulation in coleoid c...
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bioRxiv Developmental Biology @biorxiv-devbio.bsky.social · 07/10/2026
Temperature scaling of developmental tempo reveals reaction-dominated morphogen patterning www.biorxiv.org/content/10.64898/20…
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Miki Ebisuya @ebisuyamiki.bsky.social · 07/10/2026
RIKEN BDR and CuSTOM are organizing a Joint Organoid Symposium in Kobe, Japan this March! From self-organization and development to disease modeling and engineering - we have a fantastic lineup of speakers. Check it out! www2.bdr.riken.jp/joint-organo...
www2.bdr.riken.jp
Speakers | 2027 RIKEN BDR-CuSTOM Joint Organoid Symposium
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Miki Ebisuya @ebisuyamiki.bsky.social · 01/10/2026
第6回羽ばたく女性研究者賞の募集が始まりました。 日本の若手女性研究者の皆様、「この論文が出てから来年応募しよう」とか思わずに、ぜひ今年応募してください。 周囲の皆様、応募を迷っている方がいたら、ぜひ背中を押してあげてください www.jst.go.jp/diversity/re...
jst.go.jp
第6回 羽ばたく女性研究者賞(マリア・スクウォドフスカ=キュリー賞)
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Tessa Montague @tessamontague.bsky.social · 29/09/2026
I'm excited to share our new preprint: Generation of a transgenic cephalopod tinyurl.com/pc86jxz8 Cephalopods (cuttlefish, octopus & squid) are crazy critters that dynamically camouflage to their surroundings by changing the color, pattern, & texture of their skin, which they control w their brain.
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thecleverslab.bsky.social @thecleverslab.bsky.social · 28/09/2026
Using snake airway organoids, we modelled reptile virus infection in vitro. With a new Python Regius reference genome, we show that our organoids contain multiple cell types, could mount an immune response and respond to antivirals. Work from @samwillemsen.bsky.social www.nature.com/articles/s41...
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Meng Zhu @zhumeng123.bsky.social · 24/09/2026
Two years since the 1st submission, our work on limb heterochrony is finally out! 🎉🎊 @cellcellpress.bsky.social Delayed hindlimb dev vs forelimb is a widely conserved trait in mammals. We show that maternal O2 regulates this phenotype 👉🏻 shorturl.at/MGrwl
shorturl.at
Shifts in embryonic oxygen levels cue heterochrony in limb initiation
Mammalian embryos see a substantial increase in available oxygen once the placenta forms. This increase in oxygen exposure serves as a trigger for initiating the development of the hindlimb, thus cont...
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Nicolas Di-Poi @nicolasdipoi.bsky.social · 22/09/2026
Our collaborative paper on snake coiling is now out in the latest issue of @currentbiology.bsky.social and featured on the cover! 🎉 Delighted to see our work highlighted this way. You can read it here: authors.elsevier.com/c/1ni9h3QW8S... @helsinki-biotech.bsky.social @helsinki.fi
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Cell - a Cell Press journal @cp-cell.bsky.social · 22/09/2026
Now online! A geothermal amoeba sets a new upper temperature limit for eukaryotes
dlvr.it
A geothermal amoeba sets a new upper temperature limit for eukaryotes
The amoeba Incendiamoeba cascadensis demonstrates that eukaryotic life can withstand temperatures beyond what was thought possible and sheds light on molecular strategies for survival in extreme heat.
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Noonan Lab @noonanlab.bsky.social · 14/09/2026
New preprint from the lab! Using a humanized mouse model, we found that a Human Accelerated Region drives heterochronic changes in craniofacial and limb development (apologies for the re-post, we needed to adjust the thread a bit): www.biorxiv.org/content/10.6...
biorxiv.org
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Miki Ebisuya @ebisuyamiki.bsky.social · 12/09/2026
Found a picture-book-like fly agaric 🍄
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Institut Necker Enfants Malades @inem-necker.bsky.social · 07/09/2026
🔬 New publication, now out in #ScienceImmunology led by Mathieu Deygas in Pablo Vargas team, shows that Adaptive motility enables neutrophils to rapidly navigate confined capillaries 📰 To read the article: tinyurl.com/52vxuhmp
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Evan Bardot (he/him) @ebardot.bsky.social · 09/09/2026
Really excited to see these papers from @trayon.bsky.social and @ebisuyamiki.bsky.social in @cp-devcell.bsky.social! Check them out, along with my Research Highlight for @natcellbio.nature.com. www.nature.com/articles/s41... www.cell.com/developmenta... www.cell.com/developmenta...
nature.com
Keeping time with protein turnover - Nature Cell Biology
Nature Cell Biology - Keeping time with protein turnover
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Teresa Rayon @trayon.bsky.social · 09/09/2026
...and we got a very nice preview of our back-to-back papers with @ebisuyamiki.bsky.social : www.cell.com/developmenta...
cell.com
Protein turnover rate sets the developmental clock
In this issue of Developmental Cell, Matsuda et al. and Nakanoh et al. reveal that global protein turnover rate controls species-specific developmental clocks. Their findings demonstrate how translati...
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Miki Ebisuya @ebisuyamiki.bsky.social · 09/09/2026
I've just started my 2nd lab at RIKEN BDR in Kobe, Japan! This small, focused group will compare and manipulate species-specific time and shape, in collaboration with our Dresden lab. Interested in the stem cell zoo? Get in touch! www.bdr.riken.jp/en/research/...
bdr.riken.jp
Miki Ebisuya | Laboratory for Stem Cell Zoo
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ContempraInn 🌹 @contemprainn.bsky.social · 07/09/2026
Dragonflies' independent wing mechanics.
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Anh Hoang Le, PhD 🏳️‍🌈🏴󠁧󠁢󠁳󠁣󠁴󠁿🇻🇳 @anhhle2702.bsky.social · 07/09/2026
Very happy to share my postdoc paper is out now in @natcellbio.nature.com titled "Tissue flow acts as a guidance cue for immune cell polarization and directional migration". If you love imaging and immune cells, this is for you! #microscopymonday www.nature.com/articles/s41... A 🧵: 1/n
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Digital Brain @yourdigitalbrain.bsky.social · 05/09/2026
This tiny water animal has a built-in chainsaw for a mouth. The mastax of rotifers shreds algae and bacteria before every meal.
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Miki Ebisuya @ebisuyamiki.bsky.social · 03/09/2026
Congratulations to the newly minted Dr. Abiram Olivares! 🎉🎓 Abiram spearheaded a completely new project in the lab - the “Heart Rate Zoo”- establishing an in vitro platform to comparatively study spontaneous heart rates across species and development. 🫀 Thanks everyone for coming!
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Miki Ebisuya @ebisuyamiki.bsky.social · 02/09/2026
New paper from the lab! We developed a self-organizing bovine muscle and blood vessel-like network from ES cells, bringing us one step closer to creating structured cultured beef steak! 🥩🔬 www.nature.com/articles/s41... 1/
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EMBL @embl.org · 02/09/2026
Bovine stem cells offer new approach to future cultivated steak research Miki Ebisuya and her team have developed a method to grow self-organising bovine tissues containing muscle, nerve, and blood vessel cells from bovine embryonic stem cells. www.embl.org/news/science...
embl.org
Bovine stem cells offer new approach to future cultivated steak research | EMBL
EMBL Barcelona researchers develop self-organising bovine tissues that contain muscle, nerve, and blood vessel cells.
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Massimo (mirror) @rainmaker1973-m.bsky.social · 30/08/2026
Before a heart transplant, organ is connected to a warm perfusion device that pumps a continuous supply of oxygenated blood and electrolytes, keeping temperature and pressure constant while the organ is outside the human body. [📹 jaye_weston] Original post
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Ricard Solé @ricardsole.bsky.social · 22/08/2026
Does time flow differently inside an embryo? A new universal law reveals that, across animal species, early cell cycles slow according to the same hyperbolic pattern and even predicting the onset of gastrulation. @nicolettapetridou.bsky.social @embl.org check the paper: arxiv.org/pdf/2605.13234
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Massimo (mirror) @rainmaker1973-m.bsky.social · 21/08/2026
What fruits looked before humans [📹 decodedwrlds] Original post
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Cedric Boeckx @cedricboeckx.bsky.social · 19/08/2026
New @nature.com study from Paola Arlotta’s lab, led by @irenefaravelli.bsky.social & @bolanosanton.bsky.social, probing how well brain organoids recapitulate maturational steps, by keeping human brain organoids for 5 years in culture 🧪🧫🧠 www.nature.com/articles/s41...
nature.com
Human brain organoids record the passage of time over multiple years - Nature
Human brain organoids were developed for over five years in culture to demonstrate that brain cells can continue to mature and record the passage of time, following human-specific endogenous programs,...
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EMBL @embl.org · 18/08/2026
A recent EMBL study published in Developmental Cell could help explain why humans develop slower than mice. The teams analysed 4,000 genes and found that protein degradation in humans tends to be significantly slower than in mice. www.embl.org/news/science...
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Cell - a Cell Press journal @cp-cell.bsky.social · 17/08/2026
Now online! Fifteen challenges for generative AI applications to cell biology
dlvr.it
Fifteen challenges for generative AI applications to cell biology
Drawing inspiration from Hilbert’s list of 23 mathematical problems that have focused the mathematical community’s attention for more than a century, we propose fifteen grand AI challenges to focus the biomedical community’s attention on critically relevant questions, most of which still lack effective predictive methodologies.
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Miki Ebisuya @ebisuyamiki.bsky.social · 13/08/2026
New paper from the lab! authors.elsevier.com/sd/article/S... We find that protein degradation is broadly slower in human segmentation clock cells than in mouse cells, regardless of the degradation pathway or protein category! 1/
authors.elsevier.com
Systematic differences in protein stability underlie species-specific developmental tempo
Human embryonic development proceeds more slowly than in mice. The segmentation clock offers a tractable model for studying species-specific developme…
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Cell - a Cell Press journal @cp-cell.bsky.social · 11/08/2026
Now online! The sex and reproductive plasticity of intestinal muscles instruct gut size
dlvr.it
The sex and reproductive plasticity of intestinal muscles instruct gut size
Adult intestinal size plasticity is driven not only by epithelial stem cells but also by remodeling of the surrounding visceral musculature. Sex- and reproduction-dependent muscle remodeling controls gut size and transit, revealing the intestinal muscle as an active regulator of adult organ adaptation.
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Quanta Magazine @quantamagazine.org · 06/08/2026
What can the touch-obsessed naked mole rat tell us about social connection, and even pleasure? In this week’s The Joy of Why podcast, @jannalevinastro.bsky.social sits down with neuroscientist Ishmail Abdus-Saboor to discuss the science behind these sensations. podcasts.apple.com/us/podcast/h...
podcasts.apple.com
How Does Touch Lead To Pain Or Pleasure?
Podcast Episode · The Joy of Why · August 6 · 55m
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Cell - a Cell Press journal @cp-cell.bsky.social · 30/07/2026
Now online! Basement membrane turnover controls cell shape
dlvr.it
Basement membrane turnover controls cell shape
Basement membranes are scaffolds of proteins, like collagen, that give organs shape. During development, basement membranes must adapt to the growing organ. We infer how fast the basement membrane adapts by measuring collagen turnover. We find that perlecan, another basement membrane protein, regulates collagen turnover to control organ shape.
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jared toettcher @toettch.bsky.social · 24/07/2026
New Toettchlab paper alert! Harrison Oatman just published his beautiful work combining software design for "smart" microscopy+optogenetics and some really beautiful work understanding EGFR-driven collective cell migration. www.cell.com/cell-systems...
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Josep Mercadal @josepmercadal.bsky.social · 21/07/2026
Enter the oldest known fossil liverwort, Metzgeriothallus sharonae (ca. 388 Ma). These exceptionally well-preserved fossils allow us to distinguish different cell types. Dark cells (homologs of oil body cells of modern liverworts) form salt-and-pepper patterns, a hallmark of lateral inhibition.
Pictures of M. sharonae, the oldest fossil liverwort, displaying very well-preserved dark cells forming salt-and-pepper patterns, a hallmark of lateral inhibition.
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Josep Mercadal @josepmercadal.bsky.social · 21/07/2026
Our work on pattern formation in fossil and extant liverworts is out! @dev-journal.bsky.social Check it out if you are interested in fossils, evo-devo, and how mathematical modeling can help us understand the evolution of developmental processes! 🌿🧪 Thread ⬇️
journals.biologists.com
Lateral inhibition governs ancestral cellular patterning in fossil and extant liverworts
Highlighted Article: Comparative and mathematical analyses reveal that oil body cell patterning in fossil and extant liverworts is consistent with a local activation-lateral inhibition mechanism, poin...
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adamezracohen.bsky.social @adamezracohen.bsky.social · 20/07/2026
We developed a new approach for mapping absolute membrane voltage, based on dynamic photocycle control in Voltron2. www.biorxiv.org/content/10.6... Here's my favorite example: human iPSC colonies break into electrical domains as they begin to differentiate.
Top image shows a greyscale picture of some cells.  Bottom image shows a voltage map overlay in color, with two electrical "domains".Wide-area view of membrane voltage in human iPSC colonies.
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The Transmitter @thetransmitter.bsky.social · 17/07/2026
Nobel laureate Susumu Tonegawa, who pioneered cell-type-specific transgenic mice and the study of engrams, has passed away at the age of 86. By @claudia-lopez.bsky.social www.thetransmitter.org/memory/susum...
thetransmitter.org
In memoriam: Susumu Tonegawa, ‘intellectual giant’
He won the Nobel Prize for his work on immunology and then went on to define the field of learning and memory.
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San Diego Zoo Wildlife Alliance @sandiegozoo.bsky.social · 16/07/2026
For the first time ever at the San Diego Zoo Safari Park, two echidna "twins" have hatched in the same breeding season 🤎
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Manx Neurobiologist @garyrlewin.bsky.social · 15/07/2026
For me this paper is a career highlight..truly astonishing biology! www.nature.com/articles/s41...
nature.com
A queen odour mediates reproductive suppression in a eusocial mammal - Nature
Naked mole-rat (Heterocephalus glaber) queens produce isopropyl myristate, a low-volatility ester that high-ranking animals detect and avoid, which alters prolactin and progesterone in other females t...
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Philip Ball @philipcball.bsky.social · 15/07/2026
...the teeth developed not as mouse-like, but as conical reptilian teeth: the developmental program still latent in birds from their dinosaur ancestors tens of millions of years ago. 🤯
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Philip Ball @philipcball.bsky.social · 15/07/2026
I just came across this astonishing 20-year-old work. By transplanting embryonic mouse gum-forming tissue to the beak-forming region of chick embryos, the researchers showed that the chick epithelium could be induced to make teeth. But the best part is... onlinelibrary.wiley.com/doi/10.1002/...
onlinelibrary.wiley.com
Waking‐up the sleeping beauty: recovery of the ancestral bird odontogenic program
Recent advances in molecular and developmental genetics have provided tools for understanding evolutionary changes in the nature of the epithelial–mesenchymal interactions regulating the patterned ou....
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Acid Rain @bearysweet.bsky.social · 15/07/2026
This here is a Thorny devil (Moloch horridus), a lizard endemic to the arid deserts of Australia. Despite its fierce, thorn-covered appearance, it is a small, harmless creature. Microscopic grooves between its scales allow it to drink water through its skin via capillary action. So cool.
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Marine Biological Laboratory @mblscience.bsky.social · 09/07/2026
Unlike other organisms, Clytia medusae can repair damage so rapidly you can actually watch small wounds close within minutes. Larger wounds heal in less than an hour, a rate of recovery humans can only dream of. And no scar tissue is formed. 🔗 go.mbl.edu/jellyfish
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Cell - a Cell Press journal @cp-cell.bsky.social · 09/07/2026
New issue alert! 👉https://cell.com/cell/current The cover: A gene regulatory network in postharvest strawberry fruits can independently generate and maintain circadian rhythms, maintaining defense against grey mold pathogen after harvest. 🍓Image credit: Shuyu Wang and Wei Wang
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Cedric Boeckx @cedricboeckx.bsky.social · 09/07/2026
Two very nice companion preprints shedding more light on “neoteny”—the delayed neuronal maturation characterizing human development. Result: lipid homeostasis is a central node controlling the pace of neuronal maturation. one study (Taverna lab) looking at neuron-intrinsic metabolic programs & 🧪🧬🧠
biorxiv.org
Evolutionary diversification of lipid logistics shapes synaptic maturation in primates
The prolonged developmental trajectory of the human brain is a hallmark of our evolution; however, the cellular mechanisms underlying this delay remain poorly understood. Changes in lipid composition ...
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The Milinkovitch-Tzika lab @lanevol.bsky.social · 03/07/2026
How mammals get their fur? New research from the Milinkovitch-Tzika lab, published in PNAS, shows that chemotaxis—cells moving toward chemical cues—drives hair follicle precursor self-organization during embryonic development, generating diverse fur patterns across mammals. doi.org/10.1073/pnas...
doi.org
Chemotactic self-organization captures the dynamics of mammalian hair follicle patterning | PNAS
The spatial patterning of mammalian hair follicle precursors in embryonic skin is most commonly studied in the laboratory mouse (Mus musculus), whe...
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Rory Cooper @rorylcooper.bsky.social · 02/07/2026
Check out this new work from the Towers lab to learn how avian digit patterns can be transformed into mammalian-like patterns! 🔬🐣🧪 @matt-towers.bsky.social Video: www.youtube.com/watch?v=fvL_... Preprint: www.biorxiv.org/content/10.6...
youtube.com
Transforming Avian to Mammalian Modes of Digit Patterning
YouTube video by Matteo de la Torre
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Quanta Magazine @quantamagazine.org · 01/07/2026
For the very first time, biologists packed nonliving components into a cell-like membrane, piece by piece, and slowly witnessed the bag of molecules start to behave like life. @yaseminsaplakoglu.bsky.social reports: www.quantamagazine.org/for-the-firs...
quantamagazine.org
For the First Time, a Cell Built From Scratch Grows and Divides | Quanta Magazine
Scientists built a synthetic cell that combines more lifelike properties than ever before — proof of concept that it’s possible to bring nonliving materials to life, or something close to it, in the l...
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Phil Abitua @ohnolog.bsky.social · 30/06/2026
Annual killifish continue to surprise us: they make neutrophils before almost every other cell type, even before gastrulation. Neutrophils usually arise from the lateral plate mesoderm (forming in cyan), but in killifish they are already patrolling around the embryo in gold. tinyurl.com/killiphil
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MwahahahahahadScientist @mads100tist.bsky.social · 29/06/2026
Where Igor Ademeyko @adameykolab.bsky.social walks us through a beautiful scenario of what the hell neural crest cells are, co-option, and the camouflage hypothesis. With special mention of Rohon-Beard neurons! 🧪🐟
science.org
Co-option and innovation in neural crest evolution
Neural crest evolution reassembled ancient programs in pigment cell lineage, resulting in vertebrate innovations.
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