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Dmitry Kretov

@dmitry-kretov.bsky.social
270 followers 505 following 25 posts

Group Leader @Centre de Recherche du CHU de Québec-Université Laval #NewPI RNA-binding proteins and microRNAs in development and beyond.

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Reposted by Dmitry Kretov
Maria Hondele @mariahondele.bsky.social · 29/09/2026
Nuclear speckles are “hot”, but how do they actually sequester mRNPs? We find that stalled mRNPs are retained in nuclear speckles by a combinatorial RNA-binding protein network. www.biorxiv.org/content/10.6...
biorxiv.org
A combinatorial pre-mRNP retention factor network couples nuclear speckle architecture to splicing quality control
Cells must prevent incompletely spliced transcripts from entering the cytoplasm, yet how splicing status is recognized and converted into selective nuclear retention remains unclear. Here, we identify...
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Reposted by Dmitry Kretov
James Briscoe @jamesbriscoe.bsky.social · 07/09/2026
New book chapter from @jcornwallscoones.bsky.social & me On GRNs as dynamical systems. Wiring diagrams alone can't predict network behaviour. Understanding developmental patterning needs quantitative, experimentally defined rules for how CREs integrate TF inputs books.google.co.uk/books?hl=en&...
books.google.co.uk
Open Questions in Developmental Biology
This book explores the enduring and emerging questions in developmental biology, offering a comprehensive overview that bridges traditional concepts with the innovative inquiries shaping future resear...
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Reposted by Dmitry Kretov
Molecular Cell @cp-molcell.bsky.social · 05/09/2026
Selective decay of interferon mRNAs controls antiviral immunity and innate memory
dlvr.it
Selective decay of interferon mRNAs controls antiviral immunity and innate memory
Braun et al. identify that the canonical host mRNA deadenylation complex and an RNA-binding specificity factor, TTP, post-transcriptionally control antiviral interferon mRNAs through targeted deadenylation. Loss of mRNA decay machinery leads to a potent block against SARS-CoV-2 infection and can prime cells for innate immune memory.
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Katie Cockburn @katiecockburn.bsky.social · 04/09/2026
Oh wow- great opportunity for a cell biologist in an awesome McGill department (with fancy new digs!)
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Reposted by Dmitry Kretov
Reyes-Lamothe lab @reyes-lab.bsky.social · 02/09/2026
We’re hiring! The Biology department at McGill is hiring a tenure-track professor in Quantitative Cell Biology. We’re looking for an outstanding researcher and educator to join our community. Deadline: October 9 Info & application: mcgill.wd3.myworkdayjobs.com/McGill_Caree... Please share!
mcgill.wd3.myworkdayjobs.com
Assistant Professor in Quantitative Cell Biology - Department of Biology
Please refer to the How to Apply for a Job (for External Candidates) job aid for instructions on how to apply. If you are an active McGill employee (ie: currently in an active contract or position at ...
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Reposted by Dmitry Kretov
Molecular Cell @cp-molcell.bsky.social · 28/08/2026
Online Now: dsRNAscan maps human dsRNAome, revealing conservation, intermolecular dsRNA, and correlates of ADAR dependency Online now:
dlvr.it
dsRNAscan maps human dsRNAome, revealing conservation, intermolecular dsRNA, and correlates of ADAR dependency
Andrews and Bass develop dsRNAscan to predict millions of double-stranded RNA structures across the human genome. ADAR editing and structure-probing data classify ∼2.4 million predictions as high-confidence, enabling prediction of intermolecular dsRNAs, conserved dsRNAs, and quantification of dsRNA burden as a correlate of cell death after ADAR knockout.
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Reposted by Dmitry Kretov
Developmental Cell @cp-devcell.bsky.social · 13/08/2026
Online now: Systematic differences in protein stability underlie species-specific developmental tempo #biology #science
dlvr.it
Systematic differences in protein stability underlie species-specific developmental tempo
Using dynamic SILAC proteomics, Matsuda et al. show that protein degradation is globally slower in human than in mouse segmentation clock cells. Glycolysis inhibition in mouse partially phenocopies the human protein stability profile, linking metabolism, protein stability, and developmental tempo.
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Reposted by Dmitry Kretov
Cell - a Cell Press journal @cp-cell.bsky.social · 06/08/2026
www.cell.com/cell/fulltex... A genetically linked motor neuron signature in ALS
cell.com
An emergent disease-associated motor neuron state precedes cell death in ALS
Longitudinal multi-omics in SOD1-ALS mice identifies a disease-associated motor neuron (DM) state transition driven by transcription factor networks. Features of this state are conserved in human ALS ...
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Reposted by Dmitry Kretov
Nature Reviews Molecular Cell Biology @natrevmcb.nature.com · 02/08/2026
ICYMI: New Online! Exchange dynamics and kinetic control of gene regulation complexes
dlvr.it
Exchange dynamics and kinetic control of gene regulation complexes
Nature Reviews Molecular Cell Biology, Published online: 30 July 2026; doi:10.1038/s41580-026-00991-zRecent evidence reveals how gene expression complexes form transient assemblies that continually exchange their subunits under kinetic control. This Perspective proposes that these dynamics form the basis of RNA processing and gene regulation.
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Reposted by Dmitry Kretov
Olivier Saulnier @olivier-saulnier.bsky.social · 28/07/2026
www.nature.com/articles/s41... Cancer is an RNA disease: DNA is not destiny, RNA determines leukemia fate
nature.com
Cancer is an RNA disease: DNA is not destiny, RNA determines leukemia fate - Leukemia
Leukemia - Cancer is an RNA disease: DNA is not destiny, RNA determines leukemia fate
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Reposted by Dmitry Kretov
Physical Biology of Developing Systems @pbodslab.bsky.social · 28/07/2026
Single author work by Dr. Wieschaus with lovely microscopy 🧪🤩! from the discussion:Although powerful, the logic behind [mutant] approach is always indirect, given that the phenotype one sees is produced by the genes that remain, not the gene that was removed. journals.biologists.com/dev/article/...
journals.biologists.com
Maternal patterning in early Drosophila embryos: how much information can single maternal gradients supply?
Highlighted Article: Comparison of the patterning capacity of Drosophila embryos that have only one of the three maternal gradients known to control anterior posterior patterning.
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Reposted by Dmitry Kretov
Trends in Cell Biology @cp-trendscellbio.bsky.social · 18/07/2026
Nascent peptides emerge as regulators of mRNA stability
dlvr.it
Nascent peptides emerge as regulators of mRNA stability
Mobile genetic elements and their hosts engage in continuous evolutionary conflict. Marino et al. recently uncovered an unusual anti-CRISPR mechanism: the phage protein AcrVA2 triggers translation-coupled mRNA degradation by recognizing nascent Cas12. The findings suggest that nascent peptides may signal an underappreciated layer of gene regulation across the kingdoms of life.
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Nature Reviews Genetics @natrevgenet.nature.com · 08/06/2026
New online! RBPscan measures protein–RNA interactions in living cells
dlvr.it
RBPscan measures protein–RNA interactions in living cells
Nature Reviews Genetics, Published online: 08 June 2026; doi:10.1038/s41576-026-00985-9In this Tools of the Trade article, Dmitry Kretov and Daniel Cifuentes describe RBPscan (RNA-binding protein specificity and contextual analysis via nucleotide editing), a method that measures the strength of in vivo interactions between RNA binding proteins and their RNA targets.
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Reposted by Dmitry Kretov
Joey Ghersi @joeyghersi.bsky.social · 08/06/2026
📢 The Ghersi Lab is recruiting! We are looking for motivated students and postdoctoral fellows interested in stem cell biology, developmental hematopoiesis, and zebrafish genetics. Interested? Get in touch or share with your network! l1nq.com/d22fg4o
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Reposted by Dmitry Kretov
Christine Mayr @christinemayr.bsky.social · 08/06/2026
Finally out in @Cellcellpress! Proteins with long IDRs are prone to misfolding during protein synthesis. This is prevented by mRNA 3′UTRs that act as mRNA-based IDR chaperones. www.cell.com/cell/fulltex...
cell.com
mRNA 3′ UTRs chaperone intrinsically disordered regions to control protein activity
Highly conserved mRNA 3′ UTRs act as co-translational chaperones for intrinsically disordered regions (IDRs), preventing inter-domain misfolding and enabling biogenesis of fully active proteins.
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Reposted by Dmitry Kretov
Dan Landau @landau.bsky.social · 04/06/2026
Exciting breakthrough technology from the lab, now live in @cellcellpress.bsky.social ! Instead of cutting the genome where proteins bind (e.g., Cut&Tag), D&D-seq scars the DNA with a deaminase, allowing single cell genome mapping of TFs and chromatin remodellers!
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Reposted by Dmitry Kretov
Olga Anczukow @olgaanczukow.bsky.social · 22/05/2026
What is the role of #poison-exon in regulating splicing factors in stem cells and development? Check out new work from Nathan Leclair and Mattia Brugiolo and many others in my lab @jax.org #RNA #splicing www.biorxiv.org/content/10.6...
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Reposted by Dmitry Kretov
Jon Henninger @jhenninger.bsky.social · 03/06/2026
See our handy graphical abstract and article for free here: bit.ly/4vsl845
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Mélanie Laurin @melanielaurin.bsky.social · 22/05/2026
SAVE THE DATE for the 13th Canadian Developmental Biology Conference — March 7–10, 2027 — bringing together researchers, trainees, and innovators in developmental biology from across Canada and beyond.
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Reposted by Dmitry Kretov
Marvin Tanenbaum @marvintanenbaum.bsky.social · 13/05/2026
For 40 years the 8-nt ‘Kozak Sequence’ was thought to mark sites of translation initiation. In a new study, we revise this model by identifying an ~80-nt sequence—the extended Translation Initiation Sequence (eTIS)— that guides ribosomes to correct start sites. 🧵 www.biorxiv.org/content/10.6...
biorxiv.org
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Reposted by Dmitry Kretov
Christine Mayr @christinemayr.bsky.social · 08/05/2026
If you want to know what 3′UTRs with long conserved sequence stretches do, check out our BioRxiv preprint doi.org/10.64898/202.... They form functional intermolecular 3′UTR-3′UTR interactions that enable co-folding of proteins to rapidly induce transcriptional programs.
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Reposted by Dmitry Kretov
Trcek Lab @trceklab.bsky.social · 06/05/2026
New lab preprint lead by Ziqing, Siran and Ayse! doi.org/10.64898/202... In it they show that: 1) oskar mRNA clustering is driven by the synergistic action of osk concentration, the Staufen RBP and osk RNA palindrome.
doi.org
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Joey Ghersi @joeyghersi.bsky.social · 27/04/2026
The program for the 4th Canadian Zebrafish Research Conference is now available. 📅 May 15, 2026 📍 CHU Sainte-Justine, Montreal We are excited to highlight our three Postdoc Rising Stars and to have the privilege of welcoming three invited speakers. @izfs.bsky.social @zebrafishrock.bsky.social
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Reposted by Dmitry Kretov
Erez Raz @erezraz.bsky.social · 24/04/2026
A new paper from the lab shows that Nanos3 and Dead end1 can form a complex with eIF3d to activate RNA translation in primordial germ cells. link.springer.com/article/10.1...
link.springer.com
A Nanos3-containing protein complex can activate RNA translation in primordial germ cells in vivo - EMBO Reports
Maintaining the germline fate requires tight post-transcriptional control of RNA function. Here, we investigate how primordial germ cell (PGC) identity is maintained in zebrafish and reveal that the c...
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Reposted by Dmitry Kretov
PLOS Biology @plosbiology.org · 22/04/2026
Could the #ribosome be a selfish element? @mkrupovic.bsky.social & Eugene Koonin propose that the #evolution of life can viewed as a ribosomal takeover, where the ribosome evolved to consume most of the cell’s resources. 🧪 #OriginsOfLife
plos.io
The selfish ribosome
In this Essay, the evolution of life is construed as a ribosomal takeover, whereby the ribosome evolved to consume most of the cell’s resources, while other cellular componentry ensured the…
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Reposted by Dmitry Kretov
Furqan Fazal @furqanmfazal.bsky.social · 02/04/2026
Excited to share our @natprot.nature.com paper on using RNA proximity labeling to map subcellular RNA transcriptomes. We’ve been working in this area for a while and wanted to create a resource paper to guide the uninitiated reader. rdcu.be/fblvI
rdcu.be
APEX-seq maps transcriptome-wide subcellular RNA localization in living cells
Nature Protocols - This Protocol describes the transcriptome-wide labeling of RNAs in a particular subcellular compartment using proximity biotinylation by localized APEX2 enzyme and subsequent...
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Reposted by Dmitry Kretov
Joey Ghersi @joeyghersi.bsky.social · 01/04/2026
🐟 Reminder! Registration is open for the 4th CZRC in Montréal (May 15, 2026). ⏰ Abstract deadline: April 17 Submit for talks, posters, travel awards & Postodoc Rising Stars! event.fourwaves.com/4czrc/pages @izfs.bsky.social @zfinmod.bsky.social @zebrafishrock.bsky.social
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Reposted by Dmitry Kretov
Nature @nature.com · 28/03/2026
After 20 years, 58 generations and more than 30,000 cloning attempts, a team of researchers has hit the limit on the number of times a single mouse can be serially re-cloned go.nature.com/4sDtyET
go.nature.com
Can a mouse be cloned indefinitely? Decades-long experiment has answers
Nature - Repeated cloning from a single mouse failed after 58 generations. Researchers say harmful DNA changes are to blame.
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Reposted by Dmitry Kretov
Markus Landthaler @landthalerm.bsky.social · 19/03/2026
www.science.org/doi/10.1126/...
science.org
Human DHX29 detects nonoptimal codon usage to regulate mRNA stability
Synonymous codon usage controls global gene expression in both prokaryotic and eukaryotic species. Nonoptimal codons are known to induce mRNA decay; however, the underlying molecular mechanism remains...
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Reposted by Dmitry Kretov
Jakob Farnung @jakobfarnung.bsky.social · 18/03/2026
The E3 ubiquitin ligase mechanism specifying target-directed microRNA degradation (TDMD) is now published! 🎉🍾 We, @bartellab.bsky.social and Schulman lab, describe how 2-RNA factors control protein degradation by recruiting an E3 ligase. @mpibiochem.bsky.social www.nature.com/articles/s41...
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Reposted by Dmitry Kretov
Alex Schier @schierlab.bsky.social · 12/03/2026
Very happy to see this out. 👏 @yinanwan.bsky.social Bogdan Bintu and team. Whole-embryo spatial transcriptomics at subcellular resolution from gastrulation to organogenesis | free link Science www.science.org/eprint/5MHTM...
science.org
Whole-embryo spatial transcriptomics at subcellular resolution from gastrulation to organogenesis
Gene expression patterns underlie development, but their systematic detection in whole embryos has remained elusive. We introduce a whole-embryo imaging platform using multiplexed error-robust fluores...
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Reposted by Dmitry Kretov
Ariel Bazzini @bazzinilab.bsky.social · 10/03/2026
🐟 We are hiring a postdoc! Interested in RNA regulation, gene expression, and zebrafish embryogenesis? Join the Bazzini Lab at @stowersinstitute.bsky.social www.stowers.org/labs/bazzini... Please share! Details below 👇 #Postdoc #RNAbiology #zebrafish #devbio #Genomics
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Eva Maria Novoa @evamarianovoa.bsky.social · 04/03/2026
Please check out our latest #preprint to study #ACTIVELY TRANSLATING #tRNA populations and their dynamics upon #stress :) This was an wonderful collaborative effort between @novoalab.bsky.social @immagina.bsky.social and #Soares teams - thank you for making this possible!
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Reposted by Dmitry Kretov
Mart Krupovic @mkrupovic.bsky.social · 03/03/2026
With Eugene Koonin, we propose a concept of “the selfish ribosome”, under which evolution of life is viewed as a ribosomal takeover, where the ribosome evolved to consume most of the cell’s resources, while other cellular componentry ensures the propagation of the ribosome. arxiv.org/abs/2602.23268
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Sandra Wolin @slwolin.bsky.social · 22/02/2026
I am delighted to report that this is now out! A giant congratulations and thank you to all the Bluesky-less coauthors: Hyeyeon Nam, Justin Deme, Soyeong Sim, Marco Boccitto and Susan Lea.
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Zebrafish Rock! @zebrafishrock.bsky.social · 22/02/2026
For those on the job market, University of Toronto 🇨🇦 is hiring a tenure-track Assistant Professor in Zebrafish Models of Genetic and Metabolic Pathologies 🐟 Yes, they want #zebrafish! 🔗 jobs.utoronto.ca/job/Toronto-...
jobs.utoronto.ca
Assistant Professor - Zebrafish Models of Genetic and Metabolic Pathologies
Assistant Professor - Zebrafish Models of Genetic and Metabolic Pathologies
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Reposted by Dmitry Kretov
Faraz Mardakheh @handle.invalid · 21/02/2026
🎉Proud to present our latest paper, out now in Nature Communications: www.nature.com/articles/s41... RNA Binding Proteins (RBPs) are often full of intrinsically disordered regions (IDRs), but what these regions do during RNA recognition is often unclear. 1/10 #RNA #IDR #RBP
nature.com
An intrinsically disordered region mediates RNA-binding selectivity and cellular activities of LARP6 - Nature Communications
LARP6 is an EMT-associated RNA-binding protein with diverse RNA targets. Here, the authors show that the N-terminal disordered region of LARP6 promotes RNA-binding selectivity by modulating the adjace...
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Manny Ares 👀 @mannyares.bsky.social · 20/02/2026
Looks like Plasmodium delivers an anti-splicing RNA bomb to the nucleus of its host's WBC --oof! Nuclear import of malaria RNA rewires splicing in host immune cells: Cell Reports www.cell.com/cell-reports...
cell.com
Nuclear import of malaria RNA rewires splicing in host immune cells
Abou Karam et al. identify a cell communication mechanism used by the malaria parasite Plasmodium falciparum. The parasite delivers its mRNAs into monocytes and imports them into their protected nucle...
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Reposted by Dmitry Kretov
Rubén Marín-Juez @rmarinjuez.bsky.social · 18/02/2026
🚨Just join us🚨 This is a fantastic meeting with great science and better people, can't miss it!! 🦓🐟+🧑‍🔬+🇨🇦
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Raquel A Oliveira @raoliveira.bsky.social · 17/02/2026
🧵 Thread: What happens when transcription isn’t properly shut off during mitosis? Our new preprint explores just that 👇 www.biorxiv.org/content/10.6...
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Nature Reviews Genetics @natrevgenet.nature.com · 16/02/2026
New online! Bridging technical innovation and computational advances in studies of RNA–protein assemblies
dlvr.it
Bridging technical innovation and computational advances in studies of RNA–protein assemblies
Nature Reviews Genetics, Published online: 16 February 2026; doi:10.1038/s41576-026-00931-9Empirical and artificial intelligence-based approaches are redefining how RNA-dependent protein assemblies are mapped, modelled and targeted, revealing their dynamic roles in health and disease and outlining closed-loop strategies for predictive functional RNA and ribonucleoprotein design.
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Dmitry Kretov @dmitry-kretov.bsky.social · 15/02/2026
Happy to share the first review article from our lab! We discuss the landscape of available high-throughput approaches for profiling RNA–protein interactions in vitro and in vivo. We hope it will be useful when designing your next experiment. www.tandfonline.com/doi/full/10.... #RNAsky
tandfonline.com
Decoding RNA–protein interactions using high-throughput methods
RNA-binding proteins (RBPs) constitute a diverse class of proteins essential for every stage of the gene expression process. Many RBPs are also linked to human diseases and pathologies. Understandi...
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Di Jiang @dijiang319.bsky.social · 14/02/2026
@science.org Mechanisms linking cytoplasmic decay of translation-defective mRNA to transcriptional adaptation | Science www.science.org/doi/10.1126/...
science.org
Mechanisms linking cytoplasmic decay of translation-defective mRNA to transcriptional adaptation
Transcriptional adaptation (TA) is a genetic robustness mechanism through which mutant messenger RNA (mRNA) decay induces sequence-dependent up-regulation of so-called adapting genes. How cytoplasmica...
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Edoardo Gianni @edogia.bsky.social · 13/02/2026
How could a simple self-replicating system emerge at the origins of life? RNA polymerase ribozymes can replicate RNA, but existing ones are so large that their self-replication seems impossible. Could they be smaller? Excited to share our latest work in @science.org on a new small polymerase. 1/n
science.org
A small polymerase ribozyme that can synthesize itself and its complementary strand
The emergence of a chemical system capable of self-replication and evolution is a critical event in the origin of life. RNA polymerase ribozymes can replicate RNA, but their large size and structural ...
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Reposted by Dmitry Kretov
Hiroshi Ochiai @hiroshiochiai.bsky.social · 11/02/2026
1/3 New bioRxiv preprint from the lab: “Minute-scale coupling of chromatin marks and transcriptional bursts”. Led by Xiohui Gao & Chaebeen Ko. bioRxiv : www.biorxiv.org/cgi/content/...
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Dmitry Kretov @dmitry-kretov.bsky.social · 10/02/2026
Thank you @cp-molcell.bsky.social for publishing our work
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Dmitry Kretov @dmitry-kretov.bsky.social · 06/02/2026
I am thrilled to share our paper introducing RBPscan, a novel approach to profile RNA–protein interactions in living cells. Free access link at the end ⬇️ 🧵 1/ www.cell.com/molecular-ce...
cell.com
RBPscan: A quantitative in vivo tool for profiling RNA-binding protein interactions
Kretov et al. introduce RBPscan, an RNA-editing-based platform that measures how RNA-binding proteins engage their targets in living cells. This approach quantifies the binding strength of protein-RNA...
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Xuebing Wu @xuebingwu.bsky.social · 31/01/2026
Does the noncoding genome actually carry more genetic information than coding seqs? Motivated by this question we mutated every bp in the 10kb MYC locus. Results are even more exciting: Decoding the MYC locus reveals a druggable ultraconserved RNA element www.biorxiv.org/content/10.6...
biorxiv.org
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bioRxiv Synthetic Biology @biorxiv-synthbio.bsky.social · 29/01/2026
Programmable artificial RNA condensates in mammalian cells www.biorxiv.org/content/10.64898/20…
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Molecular Cell @cp-molcell.bsky.social · 28/01/2026
Online Now: Signaling to make human ribosomes: Connections between the cytoplasm and the nucleolus Online now:
dlvr.it
Signaling to make human ribosomes: Connections between the cytoplasm and the nucleolus
Lawrence et al. examine how ribosome production in the eukaryotic nucleolus is coordinated by cytoplasmic processes to maintain appropriate ribosome numbers. The authors highlight regulatory inputs from cytoplasmic signaling, mitosis, and cytoplasmic organelles that converge on nucleolar function, and they discuss how disruption of these pathways contributes to human disease.
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