Reposted by Fabrice SengerNikolai Slavov @slavov-n.bsky.social · 15hbioRxiv has a dedicated section for negative results. Use it. Share negative results. Your colleagues will appreciate it. 23013
Reposted by Fabrice SengerLoïc A. Royer 💻🔬🧪 @loicaroyer.bsky.social · 29/09/2026The original #Luxar thread is way too long and most people missed most demos, so I will be slow-dripping demos in the next weeks... Here is how you can annotate anything drawn and have text, images, videos overlays displayed on-hover or links opened on-click! 045
Reposted by Fabrice SengerbioRxiv Biophysics @biorxiv-biophys.bsky.social · 23hSelf-centering steady-state flows emerge in confined actomyosin networks www.biorxiv.org/content/10.64898/20… 021
Reposted by Fabrice SengerHeather Brown-Harding @microscopyed.bsky.social · 29/09/2026QuPath workshop with Michael Nelson-- going through many new extensions! #I2KxBINA 091
Reposted by Fabrice SengerElla de Gaulejac @elladegaulejac.bsky.social · 29/09/2026The Marseille Imaging Institute invite you to its R&D Imaging Seminar, November 2–6, 2026, La Timone Marseille Join us for a week of academic & industrial talks covering: #NuclearImaging, #AI and imaging, #OpticalImaging, #MRI, #Ultrasound & #Xray imaging Infos & registration: shorturl.at/9tVJt 043
Reposted by Fabrice SengerIMAG'IC @imag-ic.bsky.social · 29/09/2026The IMAG'IC team is back to offer you the "Introduction to the Use of #ImageJ" training course. 22 October 2026 (English) 4 November 2026 (French) institutcochin.fr/formations/f... @institutcochin.bsky.social @upcite.bsky.social @inserm.fr @cnrs.fr 088
Reposted by Fabrice SengerJean-Yves Tinevez @jytinevez.bsky.social · 27/09/2026It’s dreadful outside so please help me succeed in getting good Persian rice. Knowledgeable people: what did I miss and how to get it right next time? 161
Fabrice Senger @senger.bsky.social · 27/09/2026youtu.be/FgV2vLxCZ-s?...youtu.beDon Vito y la Revuelta en el FrenopáticoYouTube video by Kortatu - Topic 000
Reposted by Fabrice SengerIgor Brodsky @brodskyigorlab.bsky.social · 27/09/2026The power of funding fundamental discovery in driving unexpected benefits for humankind are unmatched. We should be funding more basic research not less 211034
Reposted by Fabrice SengerCaroline Bartman @cbartman.bsky.social · 26/09/2026Are there key discoveries made with spatial RNA seq? Or what are your favorite spatial rna seq papers? Pls reski! 31615
Reposted by Fabrice SengerEstibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · 25/09/2026🚨I have open PhD positions in my new lab at #NIMSB🚀!! Deadline Oct-16 nimsb.unl.pt/join-us/ 🌟I'm looking for motivated candidates who are eager to join a highly multidisciplinary team and study the intracellular dynamics of cancer cell migration using advanced computational methods and microscopy👾 01211
Fabrice Senger @senger.bsky.social · 23/09/2026Today a student told me that, referring to Gemini, the simple experiment I suggested is impossible, I. e, Sir Actin On staining... It starts to be ennoying 131
Reposted by Fabrice SengerBenoit Ladoux @bladoux.bsky.social · 23/09/2026What determines how epithelial cells divide when shape cues disappear? Our new work in @natcomms.nature.com shows that divisions follow maximal stress anisotropy — a “principal-stress rule” beyond Hertwig’s long-axis rule. Fantastic work led by @luanger.bsky.social www.nature.com/articles/s41... 24917
Reposted by Fabrice Sengerepithelial mechanics fan club @epimechfc.bsky.social · 23/09/2026Glover, J. D., Sudderick, Z. R., Shih, B. B.-J., Batho-Samblas, C., Charlton, L., Krause, A. L., ..., Crichton, M. L., & Headon, D. J. (2023). The developmental basis of fingerprint pattern formation and variation. Cell, 186(5), 940–956.e20. #EpithelialMechanics doi.org/10.1016/j.ce... 062
Reposted by Fabrice SengerRobert Haase @haesleinhuepf.bsky.social · 23/09/2026I just published a critical bugfix to bia-bob, the AI coding assistant within Jupyter. Updating code within cells should work again! Try it out: pip install bia-bob==0.36.2 github.com/haesleinhuep... 061
Reposted by Fabrice SengerEugene Katrukha 🇺🇦 @ekatrukha.bsky.social · 23/09/2026Very cool! Happy that Gaussian splats are finally being used in microscopy. Related, I think that the Sbalzarini group's 2018 attempt with "Adaptive Particle Representation (APR)" was a bit ahead of its time. But now splats have infiltrated computer vision, so a lot of code and tricks are available. 1161
Reposted by Fabrice SengerOsvaldo Chara @osvaldo-chara.bsky.social · 22/09/2026We've just released StressNET: a machine-learning method that infers the mechanical state of tissues! Check it out! (1/8) 1299
Reposted by Fabrice SengerbioRxiv Biophysics @biorxiv-biophys.bsky.social · 23/09/2026Space partitioning by self-organized epithelial networks www.biorxiv.org/content/10.64898/20… 021
Reposted by Fabrice Sengerpaveltomancak.bsky.social @paveltomancak.bsky.social · 21/09/2026Some 30 years ago, I went for it. ‘Twas a good decision. Do it! 02311
Fabrice Senger @senger.bsky.social · 22/09/2026Sounds great, could help people to use these approaches and maybe unify the calculations 111
Reposted by Fabrice SengerGdR ImaBio 🔬 @gdrimabio.bsky.social · 21/09/2026#GDRImabio #MicroscopieSolidaire 👉Toutes les infos : 🔗 imabio-cnrs.fr/microscopie-... 👉 Reportage 🔗 www.youtube.com/watch?v=HFQk...youtube.comGdR Imabio : microscopie solidaire au Burundi - 12 au 26 mai 2025 (épisode 2)YouTube video by GDR Imabio - CNRS 022
Reposted by Fabrice SengerJean-Yves Tinevez @jytinevez.bsky.social · 21/09/2026An incredible, eye opening piece 073
Reposted by Fabrice SengerGaëlle Recher @gaellerecher.bsky.social · 20/09/2026Very soon, members of the @gdrimabio.bsky.social will fly to Burundi with this suitcase full of microscopes 🔬 + 🩷 --> ✈️ --> 🇧🇮 2215
Reposted by Fabrice SengerChristophe 🔬 Leterrier @christlet.bsky.social · 19/09/2026Here's a way to get a pure science shot on Bluesky: a custom feed that only shows the posts from people you follow that are linked to a DOI bsky.app/profile/pape... 11816
Fabrice Senger @senger.bsky.social · 18/09/2026Who woud'nt be excited about something called DeepWonder? 041
Reposted by Fabrice SengerEstibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · 18/09/2026🚨Our work #ReScale4DL: balancing pixel and contextual information for enhanced bioimage segmentation, with @henriqueslab.bsky.social is out today!🚀 www.nature.com/articles/s41... ReScale4DL links key concepts in DL (receptive fields)+microscopy (resolution) so they can work #bettertogether😉 Threat👇 33920
Reposted by Fabrice SengerJonny Nixon-Abell @abelljonny.bsky.social · 18/09/2026www.science.org/doi/10.1126/... Congrats Daniel and co! Super cool to see this outscience.orgMulti-organelle signatures map cell-state diversity and metabolic adaptation in tissuesCell-state diversity drives tissue adaptability, repair, and disease resilience, but capturing this complexity is a challenge. Current approaches rely on transcriptional profiling and overlook organel... 1112
Reposted by Fabrice SengerJuan Luis @juanlu.space · 18/09/2026Found this amazing little story from @itsfoss.bsky.social about a small logistics company in Italy migrating to Linux that I think is worth sharing! itsfoss.com/linux-storie... I can see lots of SMEs in Spain that would benefit from similar help... (via @pietroppeter.bsky.social on LinkedIn)itsfoss.comHow an Italian Logistics Company Moved From Windows to Linux: A Real Migration StoryMišo Oroz shares how he migrated a small transport and logistics company in,Bergamo, Italy to Linux and open source to reduce cost and ordinary technical problems. 0146
Reposted by Fabrice SengerbioRxiv Biophysics @biorxiv-biophys.bsky.social · 17/09/2026Microscope control with a natural language agent www.biorxiv.org/content/10.64898/20… 032
Reposted by Fabrice Sengeradafruit @adafruit.com · 17/09/2026Build an MP3 audio player with #CircuitPython and parts from #Adafruit ! This personal music player features a tft display and mechanical key switches. Learn guide: learn.adafruit.com/walkmp3rson-... youtu.be/fgalBx2QSJ0 #3DPrinting 0273
Reposted by Fabrice SengerSophie Acton @actonlab.bsky.social · 16/09/2026Latest preprint now online! doi.org/10.64898/202... Veronika Lachina generates a vertex model to integrate active cellular forces and passive extracellular mechanics to produce rapid, cyclical tissue remodelling Collaboration with the brilliant @yanlanmao.bsky.social at @lmcb-ucl.bsky.social 13110
Reposted by Fabrice SengerFrance-BioImaging @france-bioimaging.bsky.social · 16/09/2026📢 The France-BioImaging September newsletter is out! Updates from our nodes, recent events, training opportunities, job offers... everything you need to know about France-BioImaging is inside. How to read it? Click here ⤵️ france-bioimaging.org/newsletter/s... 142
Reposted by Fabrice SengerSpencer LaVere Smith @spencerlaveresmith.bsky.social · 15/09/2026This merits broader readership. Robotics has hard problems. Many sim-to-real problems are hard. Cool dynamics demos by Boston Dynamics and others have lulled outsiders into overestimating how much is solved. (Glam demos often make outsiders overestimate SOTA. This is a general problem.) 032
Reposted by Fabrice SengerMerlin Lange @merlinlange.bsky.social · 15/09/2026🔬🧪 We're hiring postdocs&engineers at Institut de la Vision in AMAZING Paris 🇫🇷!! Join a dynamic team working at the nexus of retina developmental biology, spatial omics & advanced imaging Ambitious science in a supportive & young inclusive team 🚀 DM me for more info & please share 🙏 #academicsky 35525
Reposted by Fabrice Sengermyosinactncrazy.bsky.social @myosinactncrazy.bsky.social · 15/09/2026www.nature.com/articles/s41... CFM: confinement force microscopy—a dynamic, precise and stable microconfiner for traction force microscopy in spatial confinement 062
Reposted by Fabrice SengerMarie Held @makaefer.bsky.social · 15/09/2026📢📄🧑💻🔬 New protocol from the University of Liverpool: a reproducible 3D microfluidic model of the human blood-brain barrier using human brain endothelial cells and primary human astrocytes. www.jove.com/t/71652/esta...jove.com 141
Reposted by Fabrice SengerMike Lacy @mlacyphd.bsky.social · 15/09/2026Sometimes you just don't want to deal with bacteria culture and prep - Addgene now delivers DNA ready to go! 🧬🚀 Check it out: www.addgene.org/dna-service/addgene.orgAddgene: DNA Service - Transfection-Ready DNASave time with Addgene's Transfection-Ready DNA service and order ready-to-pipette DNA from over 27,000 plasmids. 062
Reposted by Fabrice SengerInstitut Jacques Monod @ijmonod.bsky.social · 14/09/2026📢 PhD Thesis defense 📅 September 29th 📍 Institut Jacques Monod Lucas Anger ( @luanger.bsky.social) ( @bladoux.bsky.social @rmmege.bsky.social Lab ) will defend his PhD thesis “Intercellular stress invariants and fluctuations in epithelial mechanical homeostasis" ➡️ buff.ly/F6PVKtX 054
Reposted by Fabrice SengerMartin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 13/09/2026Fold Spacer lets you fly through protein structures (Weekend project #2). It’s my first game: I originally set out to build a racer with structures as the tracks, but was a little too crazy. So it became this instead. You can upload your own structures. 🌐 martin-steinegger.github.io/Fold-Spacer/ 215758
Reposted by Fabrice SengerSebastian S. Cocioba @atinygreencell.bsky.social · 12/09/2026Finally found my first legendary gene in my microbial roguelike!!! This one adds a flagella to the playable character and adds a multi-tile dash to evade hostile microbes. Not too much ATP drain but still need to level up to meet its metabolic burden. I love making this game! 2316
Reposted by Fabrice Sengermyosinactncrazy.bsky.social @myosinactncrazy.bsky.social · 02/09/2026CCT8 associates with the MYO10 motor domain and regulates filopodia and breast cancer cell invasion journals.biologists.com/jcs/article/... 014
Reposted by Fabrice SengerPatrick Oakes @pwoakes.bsky.social · 18/08/2026@myosincity.bsky.social and I are looking to hire a new postdoc this winter! Open to anyone broadly interested in studying how cells generate and interpret mechanical signals. Interested applicants can reach out to me and Jordan directly. 01313
Reposted by Fabrice SengerBose-Einstein-Kondensat @mwnautilus.bsky.social · 12/09/2026A programmable, low-cost & wavelength-customizable #OpenSource benchtop #photocrosslinking chamber for controlled #bioconjugation: -6 reaction chambers -low sample heating -cost: ~$250 doi.org/10.1016/j.oh... #DIYbio #DIYchem #lab #instruments #UV #MINT #STEM #education #imaging #fluorescence 052
Reposted by Fabrice SengerAlfonso Martinez Arias @amartinezarias.bsky.social · 12/09/2026It is clear that people are using AI to review papers and grants. Often as a tool, not as an off the bottle answer for review (though some do). One of the signs of this is the detail of the negative comments and the errors, often minor and irrelevant to the conclusions. 🧵 31812
Reposted by Fabrice SengerEugene Katrukha 🇺🇦 @ekatrukha.bsky.social · 11/09/2026I thought it would be a quick and simple fix, but I had to learn about GPU work in far more depth than I expected (for my pay and age). For technical details, here are the journey logs: imagesc.zulipchat.com#narrow/chann...imagesc.zulipchat.comPublic view of imagesc | Zulip team chatBrowse the publicly accessible channels in imagesc without logging in. 1101
Reposted by Fabrice SengerJoshua Bull @joshuabull.bsky.social · 11/09/2026The MuSpAn paper is now live! If you've been working from the preprint or early access version, I'm happy to say you can now read it in its beautifully formatted final form, complete with Figures that appear at logical places in the manuscript instead of piled up at the back doi.org/10.1038/s414...doi.orgMuSpAn: a toolbox for multiscale spatial analysis - Nature CommunicationsBull, Moore, and colleagues present MuSpAn, a flexible platform for analysing spatial biology data across scales. It integrates diverse methods to enable quantitative characterisation of tissue organi... 1205
Reposted by Fabrice Sengerpaveltomancak.bsky.social @paveltomancak.bsky.social · 10/09/2026This article seems to celebrate the shift from poor support for #software #engineers in research to pretending they aren't needed at all. Did we spend 2 decades consolidating fragmented software ecosystems into platforms only to see them dissolve through "vibe coding"? www.nature.com/articles/s41...nature.comDisruption of the research software landscape through AI software generation - Nature MethodsSpecialized research software has historically been costly and time-consuming to create, but large language models (LLMs) have become capable enough at code generation to fundamentally change this. We... 7309
Reposted by Fabrice SengerNature Methods @natmethods.nature.com · 10/09/2026Our September issue is live! 🎉 www.nature.com/nmeth/volume... This special issue includes a Focus on AI in biological research. AI is everywhere these days, and is impacting nearly all fields of biology. To learn more, read our Editorial and check out the focus content!nature.comNature Methods - Focus on AI in biological researchThis month, several review and opinion pieces discuss how AI is having an impact across nearly all areas of biological research.See Editorial 173
