iiinova — where your digital self keeps evolving

Reposted by Estibaliz Gómez de Mariscal, PhD

Michael Way @drmichaelway.bsky.social · 02/10/2026

Looking for a PhD? @crick.ac.uk PhD applications for next year are open. 4 year program with lots of outstanding projects on offer. If you are interested in viral host interactions, cytoskeleton, cell bio, live cell imaging - see Way lab project + video. plz repost www.crick.ac.uk/careers-and-...

crick.ac.uk

PhD student positions

PhD projects for the 2027 Crick PhD programme.

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Reposted by Estibaliz Gómez de Mariscal, PhD

Iván Hidalgo-Cenalmor @ivanhcenalmor.bsky.social · 02/10/2026

We’ve updated #CellTracksColab to adopt the #LabConstrictor format, making CellTracksColab easier to package and distribute on local installation. If you want to understand how your cells move, give CellTracksColab a try, now directly on your own laptop or workstation! 💻 github.com/CellMigratio...

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Estibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · 25/09/2026

🚨I have open PhD positions in my new lab at #NIMSB🚀!! Deadline Oct-16 nimsb.unl.pt/join-us/ 🌟I'm looking for motivated candidates who are eager to join a highly multidisciplinary team and study the intracellular dynamics of cancer cell migration using advanced computational methods and microscopy👾

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Reposted by Estibaliz Gómez de Mariscal, PhD

Edgar R. Gomes @gomeslabo.bsky.social · 20/09/2026

Very interesting how we describe that cell cortex in myofibers is involved in tubules formation in muscle cells, with implication for centronuclear myopathies and other triadopathies. Happy to lead this work with @raquel-pereira.bsky.social @drmichaelway.bsky.social and other co authors.

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Reposted by Estibaliz Gómez de Mariscal, PhD

Edgar R. Gomes @gomeslabo.bsky.social · 20/09/2026

Great paper! Good addition to image analysis pipelines!

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Reposted by Estibaliz Gómez de Mariscal, PhD

Ricardo Henriques @henriqueslab.bsky.social · 19/09/2026

Esti's first paper as a PI and last in our lab ❤️. Rock on!

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Estibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · 18/09/2026

🚨Our work #ReScale4DL: balancing pixel and contextual information for enhanced bioimage segmentation, with @henriqueslab.bsky.social is out today!🚀 www.nature.com/articles/s41... ReScale4DL links key concepts in DL (receptive fields)+microscopy (resolution) so they can work #bettertogether😉 Threat👇

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Reposted by Estibaliz Gómez de Mariscal, PhD

MwahahahahahadScientist @mads100tist.bsky.social · 28/08/2026

It's out! I will do a thread tomorrow, but for now: rejoice, my microscopy nerds and also learn about zebrafish notochord development! 🧪🐟

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Reposted by Estibaliz Gómez de Mariscal, PhD

Juliette Griffié @juliettegriffie.bsky.social · 17/07/2026

We're thrilled to unveil our fantastic line-up of selected speakers for SMLMS 2026 at smlms.org Huge congratulations to them! 🎉 Missed the deadline? Good news! Registration and poster abstract submission have been extended until 31st July! 🔬✨

smlms.org

SMLMS 2026 – Stockholm

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Estibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · 17/07/2026

First lab's toy arrived and it's ready to warm up around🔥👾👩‍💻

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Reposted by Estibaliz Gómez de Mariscal, PhD

Loïc A. Royer 💻🔬🧪 @loicaroyer.bsky.social · 29/06/2026

1/ 🧬🔬 How does one cell become an entire animal? We can now film it in 3D 🐟, but turning those movies into accurate cell tracks is brutally hard. Enter our new #Kaggle challenge: $60K prize pool, to help crack 3D+time cell tracking at scale! 🧵👇 www.kaggle.com/competitions... @biohub.org

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Reposted by Estibaliz Gómez de Mariscal, PhD

Helen Zenner @helenzsci.bsky.social · 26/06/2026

I know for a fact that this list is 100% human-generated! For that reason, there are almost certainly some excellent research that I've missed.... Drop me a message if you have any suggestions that I should add to the list.

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Reposted by Estibaliz Gómez de Mariscal, PhD

FocalPlane @focalplane.bsky.social · 26/06/2026

📢Check out our latest preprint list on FocalPlane In this list, we focus on the latest tools and techniques in imaging, including sample prep, probes, hardware and software. focalplane.biologists.com/2026/06/26/m... Let us know if you've been reading a preprint that we should add to our list.

focalplane.biologists.com

Microscopy preprints – new tools and techniques in imaging - FocalPlane

Microscopy preprints – new tools and techniques in imaging - News

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Reposted by Estibaliz Gómez de Mariscal, PhD

Constantin Pape @cppape.bsky.social · 23/06/2026

How can we use foundation models such as (micro)SAM to improve electron microscopy segmentation? Check out our new preprint where we found substantial improvements for nucleus, mito, and neurite-segmentation based on initialization and semi-supervised learning with foundation models.

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Reposted by Estibaliz Gómez de Mariscal, PhD

Ricardo Henriques @henriqueslab.bsky.social · 17/06/2026

SMLM people, ASSEMBLE!! 🔬 The single-molecule localization crowd descends on Stockholm this August (26-28). MINFLUX, DNA-PAINT, blinking dyes, the lot. Properly good line-up and registration's still open. Don't sit this one out 👇 smlms.org

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Reposted by Estibaliz Gómez de Mariscal, PhD

Anubhav Dhar @anubhavdhar.bsky.social · 15/06/2026

Expansion microscopy is revolutionary but application to actin cytoskeleton has been challenging. Not anymore....we combine IntAct + U-ExM to get an unprecedented 3D nanoscale view of actin isoforms in expanded cells. Read the full revised paper here: plos.io/4vansgr

plos.io

IntAct-U-ExM enables super-resolution imaging of isoform-specific actin networks across species

A previous study in PLOS Biology developed IntAct, a tool to study isoform-specific actin localization, dynamics and molecular interactions across species. In this Update Article, IntAct is coupled wi...

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Reposted by Estibaliz Gómez de Mariscal, PhD

Eugene Katrukha 🇺🇦 @ekatrukha.bsky.social · 16/06/2026

With a motivating push from @christlet.bsky.social I made a new Fiji plugin, CurveMorph. The idea was to create a tool for kymograph generation along the dynamic (bending/shaking) filament shapes (microtubules, cilia, neurites, etc). The logo was made using the plugin. github.com/UU-cellbiolo...

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Reposted by Estibaliz Gómez de Mariscal, PhD

eurobioimaging.bsky.social @eurobioimaging.bsky.social · 16/06/2026

Interested in single molecule localisation microscopy? 🔬 Don't miss #SMLMS2026, hosted in by SciLifeLab, KTH and Stockholm University, with contributions from our Swedish NMI Node colleagues! 🗓️ August 26-28 in Stockholm 🇸🇪 More⤵️ smlms.org

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Reposted by Estibaliz Gómez de Mariscal, PhD

Ricardo Henriques @henriqueslab.bsky.social · 16/06/2026

#ELMI2026 is starting =). Come say hi!

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Estibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · 15/06/2026

Come and join us at #SPAOM26!! Hands-on workshops and abstract accepted, amazing list of speakers, beautiful location and a great community!!

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Reposted by Estibaliz Gómez de Mariscal, PhD

Pablo J. Sáez @pjsaez.bsky.social · 04/06/2026

1 week to start🔥 New @focalplane.bsky.social webinar series focused on #CellMigration, register & join us▶️, it will be fun! pls spread the word, in the next one, ECRs could apply to show their work ;) ▶️ to register: focalplane.biologists.com/2026/05/29/n... @dgz.bsky.social @the-node.bsky.social

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Reposted by Estibaliz Gómez de Mariscal, PhD

Pablo J. Sáez @pjsaez.bsky.social · 11/06/2026

We kicked off today the 1st session of the Focal Plane #CellMigration webinars Brilliant talks by @juanmagararc.bsky.social , @kyohalie.bsky.social & @djcohen.bsky.social Tks to Helen @focalplane.bsky.social for organization & support. Looking FWD to the next one @valeriaventurini.bsky.social !

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Reposted by Estibaliz Gómez de Mariscal, PhD

Ricardo Henriques @henriqueslab.bsky.social · 10/06/2026

The legendary @guijacquemet.bsky.social at Sigrid Juselius #AI Symposium. "I'm a cell biologist", but then 1/3 of the talk went to mechanistic cell biology, 1/3 algorithmic technology development and 1/3 AI. Gonna get him a decaf... (legend says he's also coming up soon with adaptive microscopy)

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Reposted by Estibaliz Gómez de Mariscal, PhD

Ricardo Henriques @henriqueslab.bsky.social · 10/06/2026

@gomez-mariscal.bsky.social first talk as a PI!!! Unsurprisingly, she rocked!

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Estibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · 08/06/2026

📍Arrived in Finland🇫🇮 together with @henriqueslab.bsky.social for the @sigridjuselius.bsky.social symposium AI Transforming Life Sciences and Medicine🤖💻🧬🩺 What an honour to share the program with the best! 👾🔬🌈🧫 ... and a true excitement to do it as a PI at #NIMSB for the 1st time!💙

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Reposted by Estibaliz Gómez de Mariscal, PhD

Mario Del Rosario @mariodelr.bsky.social · 05/06/2026

Workflow: 🧬 Import structure 🏷️ Choose labelling strategy 🎲 Simulate realistic stochastic labelling 🔬 Generate virtual images for Widefield, Confocal, AiryScan, STED and SMLM Helping researchers test experiments before collecting data vlab4mic.henriqueslab.org

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Reposted by Estibaliz Gómez de Mariscal, PhD

Mario Del Rosario @mariodelr.bsky.social · 05/06/2026

Resolution isn't just optics. Structural resolvability also depends on probe size, linkage error, labelling efficiency, steric hindrance and, molecular organisation. VLab4Mic models all of these starting from PDB or AlphaFold structures

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Reposted by Estibaliz Gómez de Mariscal, PhD

Mario Del Rosario @mariodelr.bsky.social · 05/06/2026

How do you know if a microscopy experiment can actually resolve a biological structure? Introducing VLab4Mic, a platform that predicts structural resolvability before you go to the microscope Led by Damián Martinez and Bruno Saraiva at @henriqueslab.bsky.social www.biorxiv.org/content/10.6...

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Reposted by Estibaliz Gómez de Mariscal, PhD

Mario Del Rosario @mariodelr.bsky.social · 05/06/2026

Can microscopy distinguish a flat from a domed clathrin lattice? VLab4Mic predicts: ❌ Confocal ❌ AiryScan ✅ STED ✅ SMLM A simple example of how simulation can guide modality selection before spending microscope time

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Reposted by Estibaliz Gómez de Mariscal, PhD

Mario Del Rosario @mariodelr.bsky.social · 05/06/2026

Congratulations to Damián Martinez, Bruno Saraiva, @taylashakespeare.bsky.social, @wmarkbates.bsky.social, Dylan Owen, @christlet.bsky.social and @henriqueslab.bsky.social We hope VLab4Mic helps researchers design better experiments and ask better biological questions 💻 vlab4mic.henriqueslab.org

vlab4mic.henriqueslab.org

VLab4Mic

A Virtual Laboratory for Microscopy — simulate fluorescence microscopy experiments before stepping into the microscope room.

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Reposted by Estibaliz Gómez de Mariscal, PhD

Ricardo Henriques @henriqueslab.bsky.social · 05/06/2026

🔬🚀 It's out! Run 100s of imaging experiments before touching a microscope. #VLab4Mic reproduces them in silico from PDB/AlphaFold to help you image right first time. From rockstars Damián Martínez & Bruno Saraiva, inaugural preprint of @mariodelr.bsky.social new lab www.biorxiv.org/content/10.6...

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Estibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · 02/06/2026

🚨Our #NIMSB PhD fellowship call closes on Friday! We're recruiting for 5 fantastic PhD projects + welcome applicants from diverse backgrounds: #biologists #computerscientists #physicists #engineers If you want to work on cutting-edge science, we'd love to hear from you 🚀 👉https://sl1nk.com/vog901g

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Reposted by Estibaliz Gómez de Mariscal, PhD

Ignacio Arganda-Carreras @iarganda.eurosky.social · 19/05/2026

This award is such a beautiful surprise! 🤩 Tons of thanks to the @royalmicrosoc.bsky.social, the amazing #BioimageAnalysis, #Fiji, #ImageJ & #OpenSource communities, my mentors and mentees, my employers, and whoever nominated me (I still don't know how that person was 😅)!

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Reposted by Estibaliz Gómez de Mariscal, PhD

IRB Barcelona @irbbarcelona.org · 15/05/2026

📢 We are #hiring! 👉 #GroupLeader positions open at #IRBBarcelona in #ChemicalBiology and #StructuralBiology. Application deadline: May 22, 2026 𝗚𝗿𝗼𝘂𝗽 𝗟𝗲𝗮𝗱𝗲𝗿 𝗶𝗻 𝗖𝗵𝗲𝗺𝗶𝗰𝗮𝗹 𝗕𝗶𝗼𝗹𝗼𝗴𝘆 ➡️ shorturl.at/1tE3n 𝗚𝗿𝗼𝘂𝗽 𝗟𝗲𝗮𝗱𝗲𝗿 𝗶𝗻 𝗦𝘁𝗿𝘂𝗰𝘁𝘂𝗿𝗮𝗹 𝗕𝗶𝗼𝗹𝗼𝗴𝘆 ➡️ shorturl.at/eKiJn #IRBJobs #Jobs #AcademicSky

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Reposted by Estibaliz Gómez de Mariscal, PhD

MwahahahahahadScientist @mads100tist.bsky.social · 14/05/2026

I deleted the previous post because it had a typo. If you could share, that would be great!

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Reposted by Estibaliz Gómez de Mariscal, PhD

Laura Cantini @cantinilab.bsky.social · 12/05/2026

📢 We are recruiting! We are looking for postdoctoral researchers to join my team at @pasteur.fr (research.pasteur.fr/en/team/mach...). We develop AI methods to infer cellular dynamics and gene regulation. If you are interested, send me an email with your CV. We look forward to hearing from you!

research.pasteur.fr

Machine Learning for integrative genomics – Research

Single-cell high-throughput sequencing, a major breakthrough in life sciences, allows to access the integrated molecular profiles of thousands of cells in a single experiment. This abundance of data p...

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Reposted by Estibaliz Gómez de Mariscal, PhD

Royal Microscopical Society @royalmicrosoc.bsky.social · 12/05/2026

We are very pleased to announce Prof. Paul Guichard and Dr. Virginie Hamel @centriolelab.bsky.social as joint winners of the RMS Award for Light Microscopy 🔬 👏 🏅 Huge congratulations to both! Read more about Paul and Virginie's achievements: www.rms.org.uk/resource/pro...

Prof. Paul Guichard (left) and Dr. Virginie Hamel both pictured smiling against a plain background. Head and shoulders images.

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Reposted by Estibaliz Gómez de Mariscal, PhD

Beth Cimini 🔬💻📊 @bethcimini.bsky.social · 07/05/2026

The Cimini lab is hiring for both postdocs and interns! The postdoc role will cover bioimage analysis projects and educational material creation; the intern will be working on our Bilayers project for helping distribute and access deep learning tools for bioimage analysis. Click below to learn more!

forum.image.sc

Postdoctoral Associate and Data Science Intern roles - Broad Institute, Cambridge MA USA

The Broad Institute Imaging Platform (the team behind CellProfiler, Piximi, and Bilayers) is currently hiring for postdoctoral and intern roles! Postdoc role: we are looking for 1-2 candidates who ha...

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Reposted by Estibaliz Gómez de Mariscal, PhD

Iván Hidalgo-Cenalmor @ivanhcenalmor.bsky.social · 06/05/2026

Since this has been such a journey, I also want to mention all the institutions (all across Europe) I have been part of while working on this project @dipcehu.bsky.social, @informatikaehu.eurosky.social, IGC, @itqbnova.bsky.social, @turkubioscience.bsky.social, @inflames-flagship.bsky.social)

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Reposted by Estibaliz Gómez de Mariscal, PhD

Iván Hidalgo-Cenalmor @ivanhcenalmor.bsky.social · 06/05/2026

Finally, I really want to thank @gomez-mariscal.bsky.social and @iarganda.eurosky.social for all their help and support, for all the Thursday meetings guiding me when I was lost, and for introducing me to the microscopy and biological worlds that I’m now in love with 🫶

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Reposted by Estibaliz Gómez de Mariscal, PhD

Iván Hidalgo-Cenalmor @ivanhcenalmor.bsky.social · 06/05/2026

Shout out to all the authors that helped on this project @aaitorg.bsky.social, Bruno M. Saraiva, Andoni Rodríquez, Pablo Alonso, @gazkune.bsky.social, @henriqueslab.bsky.social and @guijacquemet.bsky.social

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Estibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · 06/05/2026

🚨Our preprint on DL for single-image super-resolution in microscopy is out!🌟 sl1nk.com/p62yedg Our benchmark recaps an adventure of learning and questioning with @ivanhcenalmor.bsky.social & @iarganda.eurosky.social 🌟 how to objectively assess SISR models & ease the choice for their use in👉 biology🔬

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Reposted by Estibaliz Gómez de Mariscal, PhD

Sujan Ghimire @sujanghimire.bsky.social · 06/05/2026

Congratulations to @ivanhcenalmor.bsky.social and the team!

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Estibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · 24/04/2026

Want to do a PhD in biomedical research and explore the exciting world of AI, microscopy and cell biology?👾🧠🧫🔬 In a research environment of high excellence🌟 and in beautiful Portugal🏄🌸? PhD fellowships are now open at #NIMSB from May-4 til June-5 👉 APPLY lnkd.in/eqkYreFi Reach out if interested!✉️

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Estibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · 24/04/2026

What an incredible time at one of my favourite environments, hosted by the great @flc-lab.bsky.social 😍 Lots of discussion around AI (embeddings, transformers), multi-animal tracking, microglia, aquariums + MINFLUX crash course🙏! (Videos of NPs imaging at x4 speed😅) Can only be enormously thankful🥹

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