Sign in

Stephan Gruber

@gruberlab.bsky.social
1.3K followers 373 following 83 posts

Microbiologist | Biochemist | Structural Biologist, Lausanne 🇨🇭 | Studying molecular machines (SMC, ParB, Wadjet, Lamassu & more) in Genome Integrity & Nucleic Acid Immunity. 🔬 Lab homepage: wp.unil.ch/gruberlab

PostsRepliesMedia
Reposted by Stephan Gruber
Max Planck Institute of Biochemistry @mpibiochem.bsky.social · 02/09/2026
Ten years ago, our director, Stefan Jentsch, passed away. A memorial symposium will be held in his honour on October 23. Many of his former colleagues and friends will be in attendance. Would you like to join? Please register until October 1: ❕https://eveeno.com/256035281 #Ubiquitin #Symposium
01911
Reposted by Stephan Gruber
Marc Bramkamp @bramkamplab.bsky.social · 01/09/2026
Still time to apply for a fully funded PhD position in my lab on antimicrobial resistance plasticity in pathogenic Corynebacteria. jobs.uni-kiel.de/jobposting/e...
jobs.uni-kiel.de
wissenschaftliche*r Mitarbeiter*in Zielrichtung Promotion
138
Stephan Gruber @gruberlab.bsky.social · 27/08/2026
Equally poor conditions for everyone?
110
Reposted by Stephan Gruber
Cees Dekker @ceesdekker.bsky.social · 28/07/2026
Shocking sad news: our colleague Ralf Seidel has suddenly and unexpectedly passed away! www.physes.uni-leipzig.de/pdi/profil/n... Ralf did a postdoc in our #CDlab in the early 2000s and became a professor in Leipzig. He was such a kind person. We'll miss him dearly.
physes.uni-leipzig.de
121
Reposted by Stephan Gruber
Kranzusch Lab @kranzuschlab.bsky.social · 13/07/2026
Stunning pre-print from @artemisaev.bsky.social @dbikard.bsky.social and the Wang lab answering long-standing questions about OLD phage defense and extending the concept of "protein complex disassembly" controlling activation of bacterial immunity: www.biorxiv.org/content/10.6...
1205
Reposted by Stephan Gruber
Kai Kupferschmidt @kakape.bsky.social · 01/07/2026
“It’s just a microscopic water droplet surrounded by a fatty membrane and stuffed with chemicals and snippets of DNA encoding a mere 36 genes. But it’s also arguably the closest researchers have come to building a living cell from scratch.”🧪 My story in @science.org on a fascinating preprint:
science.org
Lab-created ‘SpudCell’ marks ‘stunning’ step toward building life from scratch
A synthetic cell can now grow and divide—but it’s still far from alive
612451
Reposted by Stephan Gruber
Svetlana Dodonova @dodonova-sveta.bsky.social · 19/06/2026
Excited to share our new preprint! 🧬❄️ by brilliant @mdreimann.bsky.social and great collaborators! Using cryo-ET&EM, we reveal archaeal chromatin in a near-native state: variable-beads-on-a-string fibers shaped by growth phase and histone composition #ArchaeaSky www.biorxiv.org/content/10.6...
815363
Reposted by Stephan Gruber
Justine Collier @justinecollier.bsky.social · 02/06/2026
I am delighted to share our latest preprint: doi.org/10.64898/202.... Fantastic work from my past and present lab members @flofournes.bsky.social, Sandra Martin and Nicolas Pellaton. Also many thanks to our precious collaborators @gruberlab.bsky.social and to @snsf.ch for funding this research.
21812
Reposted by Stephan Gruber
bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 30/05/2026
Genome replication and cell division control by the methylation-sensitive GcrA regulator in Agrobacterium tumefaciens www.biorxiv.org/content/10.64898/20…
035
Reposted by Stephan Gruber
Nature Structural & Molecular Biology @natsmb.nature.com · 20/05/2026
New online: Rap1-mediated steric hindrance protects telomeres from MRX sensing
dlvr.it
Rap1-mediated steric hindrance protects telomeres from MRX sensing
Nature Structural & Molecular Biology, Published online: 20 May 2026; doi:10.1038/s41594-026-01810-xThe authors show that Rap1 protein coverage protects telomeres by physically blocking the Mre11–Rad50–Xrs2NBS1 complex. Longer, denser Rap1 arrays better prevent DNA damage responses, providing a mechanism for how cells detect short telomeres and maintain genome stability
021
Stephan Gruber @gruberlab.bsky.social · 19/05/2026
We have also isolated a Geobacillus strain from our molten nutrient agar that we routinely keep for weeks at 55°C. Maybe we should sequence our isolate to see if it is the same. *We had an issue with contamination only once in 16 years though.
140
Stephan Gruber @gruberlab.bsky.social · 18/05/2026
And out of habit, I keep checking the status after a paper is rejected. A bit like phantom limb pain, but for academic rejection.
030
Reposted by Stephan Gruber
Thomas Dietterich @tdietterich.bsky.social · 13/05/2026
We are implementing a similar policy at @arxiv.bsky.social. If there is incontrovertible evidence of LLM slop in a paper, this means the authors did not take the time to read the LLM output and we can't trust anything else in the paper. Penalty is 1 year ban from arXiv followed by...
15412139
Reposted by Stephan Gruber
Tominaga K. (tomiken) @pacyc184.bsky.social · 10/05/2026
Mre11-Rad50 enhances spacer acquisition in a haloarchaeal Type I-B CRISPR-Cas system | bioRxiv www.biorxiv.org/content/10.64898/20…
012
Reposted by Stephan Gruber
Kristina Jonas @krijonas.bsky.social · 06/05/2026
We’re hiring! 🇸🇪🔬
 Tenure-track Assistant Professor in Prokaryotic Microbiology (molecular focus) at Stockholm University. Supportive environment + strong molecular research 👉https://su.varbi.com/en/what:job/jobID:921526/type:job/where:125/apply:1 Please share!!
su.varbi.com
Biträdande lektor i prokaryot mikrobiologi med inriktning mot molekylära processer
Institutionen för molekylär biovetenskap, Wenner-Grens institut (MBW) bedriver experimentell grundforskning inom molekylär cellbiologi, integrativ biologi och infektions- och immunbiologi. Forsknin
03037
Stephan Gruber @gruberlab.bsky.social · 07/05/2026
Very cool! Congrats!
010
Reposted by Stephan Gruber
Jan-Willem Veening @veeninglab.com · 24/04/2026
Spring beers with @gruberlab.bsky.social @mblokesch.bsky.social @justinecollier.bsky.social
1263
Reposted by Stephan Gruber
Yolanda Schaerli @yschaerli.bsky.social · 12/04/2026
Interested in synthetic biology & microbiomes? 🧬🧫 We are recruiting a PhD student to develop biosensors to study microbe–microbe & microbe–host interactions. In beautiful Lausanne, Switzerland🏔️⛵ @dmf-unil.bsky.social @fbm-unil.bsky.social Apply by 24.05.2026 👇 shorturl.at/6X7M4 Boosts appreciated!
shorturl.at
Career Opportunities: PhD position in microbial synthetic biology (22753)
01218
Reposted by Stephan Gruber
Paul Hoskisson 🧫 🦠🐸 @paulhoskisson.bsky.social · 10/04/2026
Really cool work from @mblokesch.bsky.social et al Competence-mediated DNA uptake diversifies Vibrio cholerae sedentary chromosomal integrons www.science.org/doi/10.1126/...
science.org
Competence-mediated DNA uptake diversifies Vibrio cholerae sedentary chromosomal integrons
Bacteria often survive viral attack and environmental stress by sharing genes that enhance their defenses. The cholera pathogen Vibrio cholerae carries a sedentary chromosomal integron (SCI), a genetic element containing hundreds of mostly promoterless ...
1155
Reposted by Stephan Gruber
Melanie Blokesch @mblokesch.bsky.social · 29/03/2026
Open postdoc position in my lab on HGT and interbacterial competition. We seek candidates with a PhD in microbiology (or related fields)+ strong 1st-author publications. Curious, highly motivated, and dedicated team players ready to contribute fully are encouraged to apply. Details: tiny.cc/cz01101
tiny.cc
Open Positions
-
06480
Reposted by Stephan Gruber
Rob Klose @robklose.bsky.social · 01/04/2026
Just a quick reminder that the first of these Associate Professorships have a closing date for applications of April the 8th. Get your application in now! Please repost
0711
Stephan Gruber @gruberlab.bsky.social · 31/03/2026
Last day to register for the SMC meeting 2026!
067
Reposted by Stephan Gruber
Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 17/03/2026
AlphaFold database has entered the era of complexes. Together with NVIDIA, DeepMind and EBI, we use ColabFold, OpenFold and MMseqs2-GPU to predict ~31 million complexes (homo & hetro-dimers) resulting in 1.8 million high-quality predictions 📄 research.nvidia.com/labs/dbr/ass... 🌐 alphafold.ebi.ac.uk
8263110
Reposted by Stephan Gruber
LMB-EPFL Graduate Life Sciences Symposium 2026 @lmbphdsymposium.bsky.social · 27/02/2026
‼️Exciting news: we are back‼️ This year marks the 20th anniversary of our graduate student symposium, and we are more than excited to be collaborating with students from the EPFL School of Life Sciences🇨🇭 📅 When? 2nd - 3rd of July 2026 📍Where? MRC Laboratory of Molecular Biology, Cambridge
323
Reposted by Stephan Gruber
Roberto Vázquez Núñez @robertovn.bsky.social · 19/02/2026
Preprint alert 🚨Happy to share my first Posdoc manuscript from the Vos lab @voslab.org. We introduce GATO-seq, a high-throughput, fully in vitro technique that maps RNA polymerases at base pair resolution over time. Using it, we found a new pause state of Pol II: sidetracking tinyurl.com/superpause
3154
Reposted by Stephan Gruber
EMBO @embo.org · 18/02/2026
Explore SMC mechanism and regulation at EMBO Workshop "Threads of life: SMC complexes in #chromosome structure and dynamics" in #Bengaluru, IN, 13–18 Dec 2026. Registration/Abstract submission by 1 Apr/1 May meetings.embo.org/event/26-smc-comp… #EMBOThreadsOfLife #genesky #EMBOevents 🧪
066
Reposted by Stephan Gruber
Rajiv McCoy @rajivmccoy.bsky.social · 21/01/2026
Pregnancy loss is common in humans, and chromosomal abnormalities are the leading cause. Using genetic data from ~140,000 IVF embryos, we show that maternal variation in meiosis genes influences recombination and aneuploidy risk. First authors: @saracarioscia.bsky.social & @aabiddanda.github.io
nature.com
Common variation in meiosis genes shapes human recombination and aneuploidy - Nature
Analysis of data from pre-implantation genetic testing sheds light on the genetic basis of meiotic-origin aneuploidy, the leading cause of human pregnancy loss, identifying common genetic variants ass...
112556
Reposted by Stephan Gruber
Daniel Benneworth-Gray @danielgray.com · 19/01/2026
COW TOOLS COW TOOLS COW TOOLS
theguardian.com
Back-scratching bovine leads scientists to reassess intelligence of cows
Brown Swiss in Austria has been discovered using tools in multiple ways – something only ever seen in humans and chimpanzees
212180725021
Reposted by Stephan Gruber
Martin Thanbichler @thanbichlerlab.bsky.social · 09/01/2026
Ancestral sequence reconstruction reveals CTP-dependent loading of the bacterial centromere-binding protein ParB as an ancient evolutionary feature Now published: tinyurl.com/4ddhwbb3 Thanks to the Hochberg and Bange labs for the great collaboration!
22712
Reposted by Stephan Gruber
Paul & Virginie - Centriole Lab @centriolelab.bsky.social · 17/12/2025
JOB ALERT: Operations Director (DCI–Lausanne). The DCI, a joint initiative of EPFL, UNIL, UNIGE and UNIBE, is recruiting an Operations Director to lead the cryo-EM facility in Lausanne. 📩 Questions: CEO of the DCI: @chgenoud.bsky.social 🔗 Apply here: careers.epfl.ch/job/Lausanne...
01416
Reposted by Stephan Gruber
Di Jiang @dijiang319.bsky.social · 19/12/2025
@science.org Chromatin buffers torsional stress during transcription | Science www.science.org/doi/10.1126/...
science.org
Chromatin buffers torsional stress during transcription
During eukaryotic transcription, Pol II must overcome nucleosome obstacles and, because of DNA’s helical structure, must also rotate relative to DNA, generating torsional stress. However, there is lim...
03211
Reposted by Stephan Gruber
Helge Fahrnberger @helge.at · 19/12/2025
Verspätungen 2025 an über 100 europäischen Bahnhöfen: Sogar italienische Züge sind pünktlicher als deutsche... 🙈 Quelle: chuuchuu.com/2025wrapped
Europa-Karte mit farbkodierten Punkten. Sehr grün in NL und CH, sehr rot in DE und IT, BE/AT/FR im Mittelfeld.
910325
Reposted by Stephan Gruber
Sholto David @sholtodavid.bsky.social · 16/12/2025
Dana-Farber Cancer Institute Agrees to Pay $15 Million to Settle Fraud Allegations Related to Scientific Research Grants. The relator [Sholto David] will receive $2,625,000 under today’s settlement. www.justice.gov/usao-ma/pr/d...
justice.gov
Dana-Farber Cancer Institute Agrees to Pay $15 Million to Settle Fraud Allegations Related to Scientific Research Grants
BOSTON – Dana-Farber Cancer Institute, Inc. (Dana-Farber) has agreed to pay $15 million to resolve allegations that, between 2014 and 2024, it made materially false statements and certifications relat...
64212
Stephan Gruber @gruberlab.bsky.social · 15/12/2025
you are brave; they will come and get you ;-)
000
Stephan Gruber @gruberlab.bsky.social · 15/12/2025
*whispers* now the DNA is left-handed...
110
Stephan Gruber @gruberlab.bsky.social · 13/12/2025
Yes, it can be annoying, but I still disagree. Nomenclature/taxonomy should aim to make literature easy to navigate for future generations, not make those comfortable (me included) who are on the way to disconnect from the tree of life 🙂
050
Reposted by Stephan Gruber
Molecular Cell @cp-molcell.bsky.social · 03/12/2025
Online Now: The Ppl protein senses 3′-hydroxyl DNA overhangs and NTP depletion to halt phage infection Online now:
dlvr.it
The Ppl protein senses 3′-hydroxyl DNA overhangs and NTP depletion to halt phage infection
Xu et al. reveal that the Ppl defense system protects bacteria from phages by acting as a “double-check” security system. It requires two simultaneous phage-induced stresses to activate, a sophisticated mechanism that ensures effective immunity while preventing premature abortive infection.
064
Reposted by Stephan Gruber
Nature Structural & Molecular Biology @natsmb.nature.com · 01/12/2025
New online: DNA topoisomerase I acts as supercoiling sensor for bacterial transcription elongation
go.nature.com
DNA topoisomerase I acts as supercoiling sensor for bacterial transcription elongation
Nature Structural & Molecular Biology, Published online: 01 December 2025; doi:10.1038/s41594-025-01703-5Vidmar et al. use cryo-EM to reveal how bacterial RNA polymerase (RNAP) and topoisomerase I (TopoI) cooperate. TopoI switches conformation, senses DNA supercoils near RNAP and relaxes them. Mutations disrupting this process alter bacterial motility and operon polarity.
094
Stephan Gruber @gruberlab.bsky.social · 25/11/2025
haha, will do, thanks!
100
Stephan Gruber @gruberlab.bsky.social · 25/11/2025
by @drhonsworth.bsky.social @roisnehamelinf.bsky.social @taschner.bsky.social James & @dnatopologylab.bsky.social
000
Stephan Gruber @gruberlab.bsky.social · 25/11/2025
The hinge bypass gate paper is finally out! doi.org/10.1038/s414... We show how loop-extruding SMC complexes can maintain DNA entrapment while bypassing obstacles on DNA — including transcription machinery & potentially other SMCs. A lucky convergence of 3 projects lead to the initial discovery!
doi.org
The SMC Hinge is a Selective Gate for Obstacle Bypass - Nature Communications
SMC complexes are ring-shaped motors that fold DNA by extruding loops, but how they navigate large DNA obstacles is unclear. Here, Liu et al., show that SMC complexes bypass obstacles by threading obs...
13215
Reposted by Stephan Gruber
Honsworth @drhonsworth.bsky.social · 25/11/2025
Glad to see this out after a rather interesting review/publication process! www.nature.com/articles/s41...
nature.com
The SMC Hinge is a Selective Gate for Obstacle Bypass - Nature Communications
SMC complexes are ring-shaped motors that fold DNA by extruding loops, but how they navigate large DNA obstacles is unclear. Here, Liu et al., show that SMC complexes bypass obstacles by threading obs...
293
Stephan Gruber @gruberlab.bsky.social · 20/11/2025
Congrats Rodrigo and co!
110
Reposted by Stephan Gruber
c0nc0rdance @c0nc0rdance.bsky.social · 17/11/2025
Prashant Singh in the lab of Tina Iverson at Vanderbilt published this image of the bacterial 🦠flagellar motor, a detailed molecular model made possibly by CryoEM 🔬. The similarity to mechanical motors are strong enough we can use terms like stator, rotor, rod & gearing to describe it.
925777
Reposted by Stephan Gruber
IMP @impvienna.bsky.social · 10/11/2025
🌍Open call: Junior Group Leader positions! Join a world-class biomedical research institute at the heart of the Vienna BioCenter, where curiosity drives discovery. Lead your own lab, pursue bold ideas, and shape the future of science at the IMP: www.imp.ac.at/career/open-...
19684
Reposted by Stephan Gruber
Freya Harrison @friendlymicrobe.bsky.social · 08/11/2025
What Rosalind Franklin truly contributed to the discovery of DNA’s structure. A really informative article, perfect for a weekend coffee read. www.nature.com/articles/d41...
nature.com
What Rosalind Franklin truly contributed to the discovery of DNA’s structure
Franklin was no victim in how the DNA double helix was solved. An overlooked letter and an unpublished news article, both written in 1953, reveal that she was an equal player.
05429
Stephan Gruber @gruberlab.bsky.social · 07/11/2025
This paper was retracted (by the authors) a long time ago: pubmed.ncbi.nlm.nih.gov/15178751/ However, I cannot find a retraction notice on the DOI page: www.science.org/doi/10.1126/... Is this standard practice, or an oversight? @science.org
pubmed.ncbi.nlm.nih.gov
The bacterial condensin MukBEF compacts DNA into a repetitive, stable structure - PubMed
Condensins are conserved proteins containing SMC (structural maintenance of chromosomes) moieties that organize and compact chromosomes in an unknown mechanism essential for faithful chromosome partitioning. We show that MukBEF, the condensin in Escherichia coli, cooperatively compacts a single DNA …
010
Stephan Gruber @gruberlab.bsky.social · 06/11/2025
Very nice Preview by @bramkamplab.bsky.social on the SMC DNA loading paper by our @roisnehamelinf.bsky.social "Weaving the loops of life: DNA loading by loop-extrusion machines in plasmid defense and genome organization" Molecular Cell www.cell.com/molecular-ce...
cell.com
Weaving the loops of life: DNA loading by loop-extrusion machines in plasmid defense and genome organization
Structural maintenance of chromosome (SMC) complexes organize and segregate DNA via loop extrusion, but the mechanism of the initial DNA loading was unclear. In this issue of Molecular Cell, Roisné-Ha...
0216
Stephan Gruber @gruberlab.bsky.social · 06/11/2025
Congrats!
100
Stephan Gruber @gruberlab.bsky.social · 05/11/2025
Thank you, Aude!
000