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Vlad Bondarenko

@vladbndk.bsky.social
941 followers 727 following 34 posts

SNSF PostDoc @FMI, Basel Turco lab 🇨🇭🇺🇦🏳️‍🌈 Developmental biology 🥚🐣🔬🖥⚙️ #bioengineering #placenta & #endometrium #organoids #biophysics #bioimaging Alumnus of Weizmann Institute of Science, Hubrecht Institute, EMBL vladyslavbondarenko.com

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Reposted by Vlad Bondarenko
Kate from Kharkiv @kateinkharkiv.bsky.social · 28/09/2026
Russia struck the National Academy of Sciences of Ukraine in Kyiv. In broad daylight! People are climbing out of windows to avoid burning alive. Freaking barbarians!
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Development @dev-journal.bsky.social · 27/09/2026
The curious case of the placental genome In this Review, Zoé Ducarne, @agathechaigne.bsky.social and @myanhtruong.bsky.social highlight the placenta, the only mammalian organ that harbors a cancer-like genome while remaining functional and healthy. doi.org/10.1242/dev....
Diagrams of a blastocyst and full-term placenta in human. More details in the paper.
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FMI science @fmiscience.bsky.social · 25/09/2026
It was a pleasure to host the monthly apéro of the Basel Pride Together community at the FMI yesterday. Nearly 80 people from companies and institutions across Basel joined us – not only to connect and network, but also to learn more about the FMI and get a glimpse into cutting-edge science.🔬🥂
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Shayan Shamipour @shamipourshayan.bsky.social · 20/09/2026
Excited to share that our **3D-4i multiplexed imaging method** is now out in @natcomms.nature.com 🎉 🔗 www.nature.com/articles/s41... Huge thanks to the reviewers and editor for their constructive feedback and smooth handling of the work!
nature.com
Multiplexed embryo profiling links cellular state to zygotic genome activation in single cells - Nature Communications
The protein landscapes that underlie multicellular self-organization remain challenging to characterize across intact embryos at high spatial resolution. Here, the authors present 3D-4i, a high-throug...
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Dariia Mykhailyshyna @dariia.bsky.social · 19/09/2026
Looking for more speakers for Workshops for Ukraine (sites.google.com/view/dariia-...), so if you want to contribute to a series by teaching a workshop on #Rstats, #Python, data analysis, while helping raise money for Ukrainian charities, drop me a message or email dmykhailyshyna@kse.org.ua #Econsky
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paveltomancak.bsky.social @paveltomancak.bsky.social · 20/09/2026
21627 applications. Nothing to celebrate here. Impossible to evaluate fairly & safely. Neither the science (too diverse & possibly LLM generated) nor the soft criteria (likely LLM generated). Without an interview stage - a security risk! marie-sklodowska-curie-actions.ec.europa.eu/whats-new/ne...
marie-sklodowska-curie-actions.ec.europa.eu
MSCA Postdoctoral Fellowships 2026 receives record number of applications
The 2026 call has attracted considerable interest from the research community with 21,627 applications submitted.
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FMI science @fmiscience.bsky.social · 10/09/2026
Our 2026 Annual Meeting wrapped up last night with a gala dinner and the traditional follies — a fitting end to three days of science, discussion and exchange with colleagues from the FMI community, Novartis and our Scientific Advisory Board.
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Teresa Rayon @trayon.bsky.social · 09/09/2026
Our article is on the COVER of this month’s issue of @cp-devcell.bsky.social! Congrats to all the authors for the hard work, especially Shota, Despina and @jamesbriscoe.bsky.social
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Caitie McCafferty @computingcaitie.bsky.social · 09/09/2026
I am looking for a lab manager for my group that I will be starting at the @fmiscience.bsky.social in February! We will use in situ structural biology to investigate dynamic ciliary processes. More info here —> bsky.app/profile/comp... #cilia #teamtomo #proteomics #protistsky
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Hubrecht Institute @hubrechtinstitute.bsky.social · 08/09/2026
Only one week left to apply for the Hubrecht International PhD program! Applications will be accepted until September 15 at 23:59 CEST. Want to know more about the theme ‘Physical and mathematical biology’? In the comments, PhD student Marek van Oostrom shares what he works on. www.hubrecht.eu/hipp/
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Jean-Yves Tinevez @jytinevez.bsky.social · 03/09/2026
New version of #Mastodon-SC, the Fiji plugin to track and lineage cells in gigantic movies! What is Mastodon? 👉 in the preprint linked to the quote post What's new? 👇
liveimagetrackingtools.org
geff
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Vlad Bondarenko @vladbndk.bsky.social · 03/09/2026
www.nature.com/articles/d41... "Letting powerful academics off the hook and punishing the people they bullied sends the message that abuse is acceptable in academia"
nature.com
Universities must stop protecting bullies — or more people will leave science
Letting powerful academics off the hook and punishing the people they bullied sends the message that abuse is acceptable in academia.
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Reposted by Vlad Bondarenko
The Loke Centre for Trophoblast Research @loke-ctr.bsky.social · 17/08/2026
🚨 Registration is closing soon for the 2026 Placental Biology Course! 100% online so participants can take part within their own schedule and time zones. 💻 Find out more and register: Placental Biology Course 2026 www.trophoblast.cam.ac.uk/placentalbio...
trophoblast.cam.ac.uk
Placental Biology Course Overview | Loke Centre for Trophoblast Research
Online course in placental biology - 14th to 18th September 2026 Registration open 2026_pcb_advertisement_material_banner.jpg This online course is aimed at students, post-docs, established…
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Teresa Rayon @trayon.bsky.social · 15/08/2026
Our work on the role of the proteasome in developmental tempo is out!!!! 🐭⌛️👤⏳ Six years after identifying an association between protein stability and developmental tempo, we now demonstrate a causal link between protein turnover and developmental tempo through proteasomal degradation
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Miki Ebisuya @ebisuyamiki.bsky.social · 13/08/2026
New paper from the lab! authors.elsevier.com/sd/article/S... We find that protein degradation is broadly slower in human segmentation clock cells than in mouse cells, regardless of the degradation pathway or protein category! 1/
authors.elsevier.com
Systematic differences in protein stability underlie species-specific developmental tempo
Human embryonic development proceeds more slowly than in mice. The segmentation clock offers a tractable model for studying species-specific developme…
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Böke Lab @bokelab.bsky.social · 12/08/2026
What does an ovary actually look like as it ages—one oocyte at a time? We mapped >85,000 oocytes in >100 intact mouse ovaries, in 3D, across the reproductive lifespan. And the ovary turned out to be much more organized than we expected. 🧵 1/5 www.nature.com/articles/s43...
nature.com
Three-dimensional mapping of intact ovaries reveals the aging dynamics of the ovarian reserve - Nature Aging
The spatiotemporal dynamics of the depletion of the ovarian reserve remain incompletely understood. Combining whole-ovary imaging, AI and modeling, the authors mapped over 85,000 mouse oocytes and fou...
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Hubrecht Institute @hubrechtinstitute.bsky.social · 13/08/2026
Only one month left to apply for the Hubrecht International PhD program (HIPP)! All information about the program and application process can be found here: www.hubrecht.eu/hipp/.
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Cornelia Schwayer @cschwayer.bsky.social · 03/08/2026
Looking for a PhD? Applications are now open for PhD positions at the Max Delbrück Center. 🧵 www.mdc-berlin.de/career/jobs/...
mdc-berlin.de
PhD Positions (m/f/d) in Biomedical Research
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Carolina Parada-Borja @caroparadab.bsky.social · 22/07/2026
Heterochronic limb patterning in marsupials reveals flexibility in the processes underlying lateral plate mesoderm morphogenesis | Science Advances www.science.org/doi/10.1126/...
science.org
Heterochronic limb patterning in marsupials reveals flexibility in the processes underlying lateral plate mesoderm morphogenesis
Accelerated limb formation in marsupials reveals canonical developmental landmarks aren’t strict prerequisites for initiation.
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FMI science @fmiscience.bsky.social · 22/07/2026
In @natcomms.nature.com, FMI scientists show that before Hydra regrows a head or foot, its cells first rebuild an internal map—working out both where they are and what stage of regeneration they’ve reached—which may help explain how tissues repair themselves after injury. www.fmi.ch/news-events/...
fmi.ch
Hydra rebuilds the body by restoring its internal cellular map
Before Hydra can regrow a head or foot, its cells appear to rebuild the internal map that tells them where they are and what they should become next, FMI researchers report. The work suggests that cel...
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Constantin Pape @cppape.bsky.social · 09/07/2026
Sharing a big update: I started a group at the MPINAT in Göttingen! We will develop AI for analyzing how proteins interact in the cellular environment based on cutting edge imaging. This appointment is in parallel to the university, where I will retain my current group.
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Sergio Menchero @sermenchero.bsky.social · 08/07/2026
The 2nd part of my postdoc is now out as a preprint! A challenging but fulfilling team effort to perform genome editing in opossums. We found that the lncRNA RSX is essential to initiate X-inactivation in marsupials 🦘 A long-standing question since the discovery that Xist is absent in marsupials 👇
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Vlad Bondarenko @vladbndk.bsky.social · 07/07/2026
Greetings from sunny Montreal! 🇨🇦 Looking forward to the start of #ISSCR2026 💫
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Nature Cell Biology @natcellbio.nature.com · 06/07/2026
👋Attending the @isscr.org meeting in Montreal this week? Our #StemCell & development editor @slefkopoulos.bsky.social will be there and happy to chat - message him! #ISSCR2026 🍰In the meantime, take a look at our new Collection of stem cell-based #embryo model papers: www.nature.com/collections/...
nature.com
Stem cell-based embryo models
Because of their ability to simulate certain aspects of embryonic development, stem cell-based embryo models can be a promising tool in our efforts to better ...
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Shayan Shamipour @shamipourshayan.bsky.social · 03/07/2026
🚀Excited to share our latest efforts in bringing highly multiplexed whole-mount imaging to intact multicellular systems! Shield-4i: an integrated platform to study multi-scale information flow in 3D embryos and embryo-like systems. Kudos to @rhornb.bsky.social for this major milestone in the lab!🚀
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Esteban Hoijman @estebanhoijman.bsky.social · 03/07/2026
Join us on a journey into the dynamics of cells during embryo development. We are offering a fully funded PhD position to investigate cell behavior using cutting-edge quantitative live imaging at the interface of Development, Immunity, and Tissue Biology. embryobioimaging.com
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James Briscoe @jamesbriscoe.bsky.social · 02/07/2026
Paying peer reviewers Interview with @danielgorelick.bsky.social about @biologyopen.bsky.social Fast & Fair trial in which peer reviewers were paid £220/review Spoiler: it works - fast, high quality reviews www.nature.com/articles/d41...
nature.com
Why paying peer reviewers works, according to a journal’s editor-in-chief
A biology journal that paid peer reviewers found that the approach cut the time to a first editorial decision by 85% and maintained high-quality reviews.
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Hanh Vu @hanhtkvu.bsky.social · 01/07/2026
Super excited that the first preprint from the lab is out! Led by an amazing student, Gaurav @gvaidya.bsky.social, jointly supervised with @mwdorr.bsky.social.
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James Briscoe @jamesbriscoe.bsky.social · 01/07/2026
New in @dev-journal.bsky.social: how tissue shape tells cells what to become Using human stem-cell neuruloids, we show how that physical boundaries encode positional information that drives cell fate patterning in a model of trunk formation A thread 🧵 journals.biologists.com/dev/article/...
journals.biologists.com
Boundary constraints can determine pattern emergence
Summary: A reaction-diffusion mechanism recapitulates pattern emergence in an in vitro model of neuromesodermal progenitors under a variety of boundary and geometrical perturbations.
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Cornelia Schwayer @cschwayer.bsky.social · 01/07/2026
Excited to share that our work on ‘How the gut gets patterned during regeneration’ is out now cell.com/cell/fulltext/S0092-8674(26)00696-3 Thanks a lot to @priscaliberali.bsky.social @silviabarbiero.bsky.social @davidbrueckner.bsky.social @ehannezo.bsky.social and all co-authors! 🧵
cell.com
Multiscale integration of tissue and chromatin context converts cell heterogeneity into stable intestinal patterning
During regeneration, tissues must translate transient cellular variability into stable spatial organization. Tissue architecture generates a density-dependent window of heterogeneity in the mechanosen...
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Nature Cell Biology @natcellbio.nature.com · 29/06/2026
☕He, Wang, Ding et al. report a transcriptomic atlas of human female reproductive tract segments from fetuses at gestational weeks 10 to 25. 👉https://rdcu.be/fq3ms www.nature.com/articles/s41...
nature.com
Segmental specification of the human female fetal reproductive tract revealed by spatiotemporal dynamics - Nature Cell Biology
He, Wang, Ding and colleagues report a transcriptomic atlas of human female reproductive tract segments from fetuses at gestational weeks 10 to 25.
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William DeWitt @wsdewitt.github.io · 27/06/2026
Spectacular preprint led by @sydsat.bsky.social in @ohnolog.bsky.social lab, @uwgenome.bsky.social. Neutrophils precede gastrulation in killifish and rapidly patrol the yolk. (1/2)
doi.org
Early immune cell development precedes gastrulation in annual killifish
During embryogenesis, cell types arise in a predictable order because developmental regulators act sequentially. But how evolutionary changes in morphogenesis reshape the signaling environments that a...
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CosmicRami 🏳️‍🌈🏳️‍⚧️ @rami.spaceaustralia.com · 02/06/2026
If you're looking to queer up your timelines with enriching STEM content this #Pride, then @prideinstem.bsky.social has you covered with these three excellent starter packs! go.bsky.app/BFc4wgf go.bsky.app/Cw9bRYZ go.bsky.app/Cw9bRYZ Lift queer voices this month!
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Isabella Backman @izzybackman.bsky.social · 24/06/2026
For @science.org, I reported on fascinating research from @nuduncanlab.bsky.social that has found that the ovaries undergo a surprising transformation after menopause. www.science.org/content/arti...
science.org
After menopause, ovaries may transform into organs with immune powers
Mouse and human data suggest ovaries develop a new function after reproductive duties end
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Nature Biotechnology @natbiotech.nature.com · 24/06/2026
Mapping and engineering the human cell–cell interactome - @uclasamueli.bsky.social www.nature.com/articles/s41...
nature.com
Mapping and engineering the human cell–cell interactome - Nature Biotechnology
Di Carlo and colleagues discuss technologies required to map and engineer the human cell–cell interactome and the therapeutic avenues such an atlas could unlock.
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EMBL @embl.org · 24/06/2026
Congratulations, Anna Erzberger! The EMBL Group Leader has received the Inaugural Suzanne Eaton ‘Rising Star’ Award for Physics of Life in 2026, presented by @poldresden.bsky.social. Learn more: www.embl.org/news/awards-...
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Nicoletta Petridou @nicolettapetridou.bsky.social · 23/06/2026
Double preprint! 👇 Check out our latest studies on timing, heterogeneity and collective behaviour (with a fun tiny bonus on evolution!) 1. www.biorxiv.org/content/10.6... 2. arxiv.org/abs/2605.13234
biorxiv.org
Cellular timing heterogeneity regulates phase transitions in living matter
Rigidity transitions govern tissue organization in ways reminiscent of inert materials. Yet, living tissues are composed of active units with autonomous timing mechanisms, raising the question whether...
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Caitie McCafferty @computingcaitie.bsky.social · 22/06/2026
Happy to finally share that I will be starting my independent group at the @fmiscience.bsky.social in Feb 2027 in a vibrant new environment. We will use integrative in situ structural cell biology methods to investigate ciliary structure and dynamics in several model (and non-model 👀) systems!!
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Institut Curie @institutcurie.bsky.social · 22/06/2026
Applications are open for the international course “Developmental Biology” organized by the Institut Curie in partnership with @sorbonne-universite.fr 📅 Oct. 19–28, 2026 (Paris) ⏳ Jul. 19 & Sept. 18 🔗 training.institut-curie.org/courses/developmental-biology-2026
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Alfonso Martinez Arias @amartinezarias.bsky.social · 21/06/2026
Preprints are used in evaluations in most sensible funding bodies, including ERC, and should be THE evaluation tool of the work. That ‘come back when you have published the work’ states where we are at, the degradation of Science that we are achieving.
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Vlad Bondarenko @vladbndk.bsky.social · 21/06/2026
Many thanks to organisers and @snsf.ch for a meeting of academic parity movement, european dialog against academic bullying. Many valuable discussions and important points on making academia a better and a more fair place for researchers across all career stages
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Alison Kickuth @alisonkickuth.bsky.social · 18/06/2026
I am honoured to have received the Otto Hahn Medal! Thank you Jan @brugueslab.bsky.social, @ursa-ursic.bsky.social, Michael Staddon, @mpi-cbg.de, and @poldresden.bsky.social for your support during this scientific journey!
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Thomas Lecuit @thomaslecuit.bsky.social · 13/06/2026
This will be on 26 June in Paris! 🤩You are welcome to join and participate in this exciting 1-day conference at the College de France on Biological computational accross areas of biology. Fantastic speakers. Free, no registration, at the heart of Paris on a lovely season. Worth planning a weekend…?
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PG Sanchez 🇵🇭🏳️‍🌈 (siya) @poljiology.bsky.social · 11/06/2026
Unplanned reunion with former @embldbunit.bsky.social labmates @aliseleit.bsky.social and @jorgelazaro.bsky.social at #EED2026!!
Posing in front of the University of Glasgow towerPhoto taken during the poster session
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FMI science @fmiscience.bsky.social · 11/06/2026
Congratulations to Marylène Bonvin, who defended her PhD thesis last week! Her work explored how metabolism and gene regulation help Hydra — a tiny freshwater animal famous for regeneration — organize and maintain its body plan 👏
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Ingelfinger Lab @ingelfingerlab.bsky.social · 08/06/2026
hello world. Excited to launch the Ingelfinger Lab account! We’re a young lab in Germany’s Black Forest tackling key questions in immunology with innovative single-cell technologies. Follow us for updates on systems immunology, machine learning & translational oncology. fi
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Laura Rustarazo-Calvo @laura-rustarazo.bsky.social · 02/06/2026
⚡ Our paper is now out in @natphys.nature.com ! This version now includes a detailed molecular characterisation of the optogenetic perturbations, new insights on the relevance of tricellular junctions for tissue morphology, and beautiful light-sheet timelapses. 🔬 www.nature.com/articles/s41...
nature.com
Adhesion-driven rigidity transition decoupled from density-driven jamming triggers epithelial organization in embryonic tissues - Nature Physics
Tissue phase transitions are key to morphogenesis. Now adhesion-driven rigidification is identified as key to epithelial organization but only if uncoupled from density-driven jamming.
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FMI science @fmiscience.bsky.social · 02/06/2026
Congratulations to Sera Weevers, who successfully defended her PhD thesis yesterday! Her work explored how Hydra—tiny creatures with regenerative superpowers—use chemical signals and physical forces to decide where to grow a new head 🎓
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Gautam Dey @gautamdey.bsky.social · 18/05/2026
Multinucleate cells challenge deeply-held assumptions about complexity, ecological success and evolution. Postdoc extraordinaire and gifted writer @mrosjac.bsky.social tackles this subject with aplomb - tell us what you think! www.sciencedirect.com/science/arti... @currentbiology.bsky.social
sciencedirect.com
Multinucleation as a recurring evolutionary strategy for scaling and plasticity
Multinucleate cells — single cells containing multiple nuclei in a shared cytoplasm — are found across the eukaryotic tree of life. Having evolved ind…
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Nicoletta Petridou @nicolettapetridou.bsky.social · 15/05/2026
Glad to see this out in its final form! www.nature.com/articles/s41... What changed since the preprint? Wonderful experiments disentangling the effect of receptor binding vs tissue porosity on Nodal diffusion, plus one of the smoothest review experiences! Thanks @natcellbio.nature.com & reviewers 🙏
nature.com
Tissue rigidity phase transition shapes morphogen gradients - Nature Cell Biology
Autorino et al. report a feedback loop between Nodal signalling and tissue phase transitions in zebrafish embryos. Nodal alters adhesion, triggering tissue rigidification and reduced porosity, which l...
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