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UW Genome Sciences

@uwgenome.bsky.social
317 followers 1 following 89 posts

The Department of Genome Sciences at The University of Washington

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UW Genome Sciences @uwgenome.bsky.social · 01/10/2026
Vibe Coding Moves Beyond the Proteomics Prototype theanalyticalscientist.com/issues/2026/...
theanalyticalscientist.com
Vibe Coding Moves Beyond the Proteomics Prototype
The MacCoss Lab used Claude to build and validate an open-source DIA search tool – an experiment that could change how scientists and software developers work together
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UW Genome Sciences @uwgenome.bsky.social · 29/09/2026
Prioritizing Peptides for Targeted Mass Spectrometry Experiments Using Deep Learning pubs.acs.org/jprobs/artic...
pubs.acs.org
Prioritizing Peptides for Targeted Mass Spectrometry Experiments Using Deep Learning
Abstract. One critical step in any targeted mass spectrometry experiment is selecting, from each protein of interest, a small number of peptides that respo
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UW Genome Sciences @uwgenome.bsky.social · 15/09/2026
Congratulations to Michaela Cheechov on being awarded this year's Bonita and David Brewer Fellowship for research in model organisms! www.gs.washington.edu/academics/aw...
gs.washington.edu
Bonita and David Brewer Fellowship – UW Genome Sciences
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UW Genome Sciences @uwgenome.bsky.social · 03/09/2026
From Fellowship to Findings: Syd Sattler on the Embryo's Earliest Immune Cells education.uwmedicine.org/blog/2026/08...
education.uwmedicine.org
From Fellowship to Findings: Syd Sattler on the Embryo's Earliest Immune Cells  - UWSOM Intranet
In 2024, we introduced you to Sydney “Syd” Sattler, then a PhD candidate in the Abitua Lab in UW’s Department of Genome Sciences, as the first UW recipient of the Shurl and Kay Curci Foundation PhD Fe...
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UW Genome Sciences @uwgenome.bsky.social · 02/09/2026
3D epigenome of glial cell types in developing human cortex www.nature.com/articles/s41...
nature.com
3D epigenome of glial cell types in developing human cortex - Nature
Integrative 3D epigenomic profiling of four glial cell types from the mid-gestation human cortex reveals cell-type-specific regulatory elements and chromatin interactions that illuminate the roles of ...
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UW Genome Sciences @uwgenome.bsky.social · 20/08/2026
Congratulations to 2026 Waterston Travel Award winners! Max Dippel Claire Elbon Sophia Gibson Chris Hsu Anna Leipertz Dustin Mullaney Ananthan Nambiar Samvardhini Sridharan Katarina Vlajic
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UW Genome Sciences @uwgenome.bsky.social · 19/08/2026
Evidence for G6PD variant classification from multiplexed functional assays Current and former Dunham and Fowler Lab members are authors on paper in Genome Biology. link.springer.com/article/10.1...
link.springer.com
Evidence for G6PD variant classification from multiplexed functional assays - Genome Biology
Background G6PD deficiency is one of the most common enzyme deficiencies worldwide, and increases the likelihood of adverse reactions to certain drugs and foods. As availability of routine sequencing ...
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UW Genome Sciences @uwgenome.bsky.social · 13/06/2026
Replaying germinal center evolution on a quantified affinity landscape www.cell.com/cell/fulltex...
cell.com
Replaying germinal center evolution on a quantified affinity landscape
Antibody affinity maturation results from a somatic evolutionary process that takes place in the germinal center. A “parallel replay” experiment on germinal center B cells reveals the evolutionary for...
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UW Genome Sciences @uwgenome.bsky.social · 12/06/2026
A global map for introgressed structural variation and selection in humans pubmed.ncbi.nlm.nih.gov/42275491/
pubmed.ncbi.nlm.nih.gov
A global map for introgressed structural variation and selection in humans - PubMed
Genetic introgression from Neanderthals and Denisovans shaped modern human genomes; however, introgressed structural variants (SVs ≥ 50 base pairs) remain challenging to discover. We integrated high-q...
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UW Genome Sciences @uwgenome.bsky.social · 12/06/2026
Congratulations to the winners of the GS outstanding Service Award: Bonny Brewer (faculty), Josh Malamy (staff), Joe Min (student), and Ryan Friedman (postdoc)!
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UW Genome Sciences @uwgenome.bsky.social · 05/06/2026
Congratulations to Joe Felsenstein on being elected to the Fellowship of the Royal Society, the UK's national academy of sciences! royalsociety.org/people/josep...
royalsociety.org
Professor Joe Felsenstein FRS | Royal Society Fellow
After initially work on population genetics theory of recombination, of migration, and of speciation, his main focus has been on phylogenetic inference. He s...
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UW Genome Sciences @uwgenome.bsky.social · 29/05/2026
Congratulations to Leah Anderson on winning People's Choice at the UW Three Minute Thesis competition! grad.uw.edu/current-stud...
grad.uw.edu
2026 UW 3MT Winners
Congratulations to this year’s winners and all of the finalists for sharing their work and representing the breadth and brilliance of graduate research at the University of Washington! First Place |…
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UW Genome Sciences @uwgenome.bsky.social · 13/05/2026
Image-based, pooled phenotyping reveals multidimensional, disease-specific variant effects www.cell.com/cell/fulltex...
cell.com
Image-based, pooled phenotyping reveals multidimensional, disease-specific variant effects
Variant in situ sequencing (VIS-seq) links genetic variants to cell images, revealing how variants affect molecules, subcellular structures, and cells at scale. Applied to thousands of LMNA and PTEN v...
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Reposted by UW Genome Sciences
Fred Hutch Biostatistics Program @fredhutchbiostat.bsky.social · 12/05/2026
From our Statistical AI Symposium: Bill Noble from @uwgenome.bsky.social on foundation models for chromatin 3D architecture and proteomics mass spectrometry: two very different data types, one elegant framework. 🎥 youtu.be/S6sHSW_bLvY?... #Biostatistics #AIinHealth #FoundationModels
youtu.be
William Noble on Foundation Models
YouTube video by Fred Hutch Biostatistics Program
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UW Genome Sciences @uwgenome.bsky.social · 11/05/2026
Congratulations to Hannah Jordt on receiving the UW Distinguished Teaching Award! www.washington.edu/facultystaff...
washington.edu
Announcing the 2026 Awards of Excellence recipients
The UW is delighted to announce the recipients of the 56th annual University of Washington Awards of Excellence! The awards honor outstanding alumni, faculty, staff, students and retirees who...
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Reposted by UW Genome Sciences
Devin Schweppe @dschweppe.bsky.social · 03/05/2026
Excited to see this collaborative work with @oligopain.bsky.social and @keribackus.bsky.social out as a preprint now! Took a ton of work from a great team of scientists @uwgenome.bsky.social and #UCLA The imaging coupled with proteomics open our eyes to new aspects of subcellular organization!
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UW Genome Sciences @uwgenome.bsky.social · 28/04/2026
Congratulations to Jesse Bloom on being elected to the National Academy of Sciences! www.nasonline.org/news/2026-na...
nasonline.org
National Academy of Sciences Elects Members and International Members - NAS
WASHINGTON — The National Academy of Sciences announced today the election of 120 members and 25 international members in recognition of their distinguished and continuing achievements in original res...
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UW Genome Sciences @uwgenome.bsky.social · 20/04/2026
Congratulations to Hank Cheng on being named to the Husky 100! www.washington.edu/husky100/#na...
washington.edu
Husky 100
The Husky 100 recognizes 100 UW undergraduate and graduate students who are making the most of their time at the UW.
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UW Genome Sciences @uwgenome.bsky.social · 14/04/2026
Congratulations to Kyra Fetter, Kayla Ly, and Mary Krebs on receiving NSF fellowships and to Katrina Peterson and Ivan Woo on receiving honorable mention!
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UW Genome Sciences @uwgenome.bsky.social · 14/04/2026
Recurrent mutations drive rapid HIV escape from two broadly neutralizing antibodies in vivo www.pnas.org/doi/10.1073/...
pnas.org
Recurrent mutations drive rapid HIV escape from two broadly neutralizing antibodies in vivo | PNAS
Broadly neutralizing antibodies (bNAbs) show promise for HIV treatment and prevention, but are vulnerable to resistance evolution. Comprehensively ...
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UW Genome Sciences @uwgenome.bsky.social · 13/04/2026
Q&A with Dr. Maitreya Dunham: Reflecting on MSS 2026 and Looking Ahead to the Future of Genome Science brotmanbaty.org/news/q-and-a...
brotmanbaty.org
Q&A with Dr. Maitreya Dunham: Reflecting on MSS 2026 and Looking Ahead to the Future of Genome Science | Brotman Baty Institute
BBI
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UW Genome Sciences @uwgenome.bsky.social · 13/04/2026
Genetic diversity and regulatory features of human-specific NOTCH2NL duplications pubmed.ncbi.nlm.nih.gov/41916274/
pubmed.ncbi.nlm.nih.gov
Genetic diversity and regulatory features of human-specific NOTCH2NL duplications - PubMed
NOTCH2NL (NOTCH2-N-terminus-like) genes arose from ape-specific chromosome 1 segmental duplications implicated in human brain cortical expansion, including an incomplete NOTCH2 gene. Genetic character...
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UW Genome Sciences @uwgenome.bsky.social · 04/04/2026
Congratulations to Iris Jia on being awarded the Charlie Moore Award for outstanding contributions to cystic fibrosis microbiology research!
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UW Genome Sciences @uwgenome.bsky.social · 03/04/2026
Congratulations to Katy Loubet-Senear on being awarded a WRF Postdoctoral Fellowship!
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Reposted by UW Genome Sciences
EichlerLab @eichlerlab.bsky.social · 31/03/2026
Check out UW Medicine's feature on the Eichler Lab www.youtube.com/watch?v=A3Ur... @uwgenome.bsky.social @hhmi-science.bsky.social
youtube.com
What Happens in a Genomics Lab? How Research Today Improves Lives Tomorrow
YouTube video by UW Medicine
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UW Genome Sciences @uwgenome.bsky.social · 30/03/2026
NeMO Analytics: a compendium of transcriptomic data for the exploration of neocortical development www.nature.com/articles/s41...
nature.com
NeMO Analytics: a compendium of transcriptomic data for the exploration of neocortical development - Nature Neuroscience
NeMO Analytics is a compendium of public transcriptomic data focused on the neocortex, enabling biologists without coding expertise to explore hundreds of datasets. Joint decomposition of these data y...
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UW Genome Sciences @uwgenome.bsky.social · 27/03/2026
Congratulations to Maitreya Dunham and David Baker on being named AAAS Fellows! www.washington.edu/news/2026/03...
washington.edu
Four UW researchers named AAAS Fellows
Four University of Washington researchers have been named AAAS Fellows, according to an announcement by the American Association for the Advancement of Science. They are among 449 newly elected...
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UW Genome Sciences @uwgenome.bsky.social · 25/03/2026
Congratulations to Lauren Fields on being selected as a Schmidt Science Fellow! schmidtsciencefellows.org/fellow/laure...
schmidtsciencefellows.org
Lauren Fields • Schmidt Science Fellows
Amyotrophic lateral sclerosis (ALS) is a fatal progressive neurodegenerative disease with no known cure. As a Schmidt Science Fellow, Lauren will use advanced mass spectrometry and protein analysis of...
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UW Genome Sciences @uwgenome.bsky.social · 13/03/2026
How an MD-PhD Student With Hemophilia Made a Genetic Research Breakthrough rightasrain.uwmedicine.org/well/researc...
rightasrain.uwmedicine.org
An MD-PhD Student Had Hemophilia
How he made a research breakthrough.
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UW Genome Sciences @uwgenome.bsky.social · 11/03/2026
Context dependency is essential for predicting intrahost evolution www.nature.com/articles/s41...
nature.com
Context dependency is essential for predicting intrahost evolution - Nature Ecology & Evolution
The ability to predict rapid evolutionary processes within our bodies would advance both medical science and evolutionary biology. We discuss technologies that move us towards intrahost evolutionary p...
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UW Genome Sciences @uwgenome.bsky.social · 10/03/2026
Long-read sequencing of families reveals increased germline and postzygotic mutation rates in repetitive DNA www.nature.com/articles/s41...
nature.com
Long-read sequencing of families reveals increased germline and postzygotic mutation rates in repetitive DNA - Nature Communications
Short‑read sequencing misses many early and repeat‑driven mutations. Here, the authors show that long‑read sequencing in autism families increases detection of germline and postzygotic mutations and r...
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UW Genome Sciences @uwgenome.bsky.social · 10/03/2026
Using the linear references from the pangenome to discover missing autism variants www.nature.com/articles/s41...
nature.com
Using the linear references from the pangenome to discover missing autism variants - Nature Communications
Large-effect variants in autism remain elusive. Here, the authors use long-read sequencing to assemble phased genomes for 189 individuals, identifying pathogenic variants in TBL1XR1, MECP2, and SYNGAP...
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UW Genome Sciences @uwgenome.bsky.social · 26/02/2026
Congratulations to Mike MacCoss on receiving the Distinguished Contribution in Proteomics Award, Bill Noble on receiving the Computational Proteomics Award, and Nathan Basisty on receiving the New Investigator Award from US HUPO! us-hupo.org/Awards
us-hupo.org
US HUPO - Awards
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UW Genome Sciences @uwgenome.bsky.social · 18/02/2026
Using Experimental Evolution to Correct Mother-Daughter Separation Defects in Brewing Yeast www.micropublication.org/journals/bio...
micropublication.org
Using Experimental Evolution to Correct Mother-Daughter Separation Defects in Brewing Yeast | microPublication
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UW Genome Sciences @uwgenome.bsky.social · 12/02/2026
Congratulations to Riku Yasutomi on being awarded an NRSA Fellowship!
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UW Genome Sciences @uwgenome.bsky.social · 12/02/2026
Congratulations to Andrew Stergachis on being elected to the American Society for Clinical Investigation!
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UW Genome Sciences @uwgenome.bsky.social · 27/01/2026
Congratulations to the Stergachis Lab on being awarded an AI for Science fund award from Google! blog.google/company-news...
blog.google
We’re announcing the 12 recipients of our AI for Science fund
A look at the 12 recipients of the first AI for Science fund.
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UW Genome Sciences @uwgenome.bsky.social · 05/12/2025
Intracellular interactions shape antiviral resistance outcomes in poliovirus via eco-evolutionary feedback www.nature.com/articles/s41...
nature.com
Intracellular interactions shape antiviral resistance outcomes in poliovirus via eco-evolutionary feedback - Nature Ecology & Evolution
A model of intrahost poliovirus replication shows that, after several rounds of replication, pocapavir, a poliovirus capsid inhibitor, collapses viral density, preventing intracellular interactions th...
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UW Genome Sciences @uwgenome.bsky.social · 04/12/2025
Mapping single-cell diploid chromatin fiber architectures using DAF-seq www.nature.com/articles/s41...
nature.com
Mapping single-cell diploid chromatin fiber architectures using DAF-seq - Nature Biotechnology
Single-molecule chromatin fiber sequencing exposes single-cell-level heterogeneity in the chromatin architecture of individual regulatory elements.
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UW Genome Sciences @uwgenome.bsky.social · 02/12/2025
Congratulations to David Baker, Riza Daza, Evan Eichler, Mike MacCoss, Brendan MacLean, Hannah Pliner, Jay Shendure, and Cole Trapnell on being named to the Clarivate Highly Cited Researchers List for 2025!
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UW Genome Sciences @uwgenome.bsky.social · 14/11/2025
Congratulations to Joe Felsenstein on being awarded the 2026 Mendel Medal by the Genetics Society! genetics.org.uk/medals-and-p...
genetics.org.uk
Mendel Medal 2026 - Professor Joe Felsenstein | Genetics Society
The Mendel Medal 2026 has been awarded to Professor Joe Felsenstein. Professor Joe Felsenstein was born in 1942, grew up in Philadelphia and studied as an
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UW Genome Sciences @uwgenome.bsky.social · 14/11/2025
Congratulations to Alison Feder on being named a 2025 Freeman Hrabowski Scholar! www.hhmi.org/programs/fre...
hhmi.org
The 2025 Freeman Hrabowski Scholars | HHMI
Freeman Hrabowski Scholars are outstanding early career faculty who have the potential to become leaders in their research fields.
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UW Genome Sciences @uwgenome.bsky.social · 12/11/2025
Congratulations to Bill Noble on receiving the 2026 Gil Omenn Computational Proteomics Award from US HUPO! us-hupo.org/Computationa...
us-hupo.org
US HUPO - Computational Proteomics Award
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UW Genome Sciences @uwgenome.bsky.social · 12/11/2025
Congratulations to Mike MacCoss on receiving the Donald F. Hunt Distinguished Contribution in Proteomics Award from US HUPO! us-hupo.org/Distinguishe...
us-hupo.org
US HUPO - Distinguished Contribution Award
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UW Genome Sciences @uwgenome.bsky.social · 02/11/2025
Congratulations to Winston Dredge on being awarded a WRF Postdoctoral Fellowship!
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UW Genome Sciences @uwgenome.bsky.social · 28/10/2025
Jay Shendure elected to National Academy of Medicine newsroom.uw.edu/blog/jay-she...
newsroom.uw.edu
Jay Shendure elected to National Academy of Medicine - UW Medicine | Newsroom
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UW Genome Sciences @uwgenome.bsky.social · 23/10/2025
CellCover Defines Marker Gene Panels Capturing Developmental Progression in Neocortical Neural Stem Cell Identity elifesciences.org/reviewed-pre...
elifesciences.org
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UW Genome Sciences @uwgenome.bsky.social · 06/10/2025
Mechanisms underlying thermally induced growth plasticity in juvenile Pacific halibut journals.biologists.com/jeb/article/...
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UW Genome Sciences @uwgenome.bsky.social · 24/09/2025
Epithelial competition determines gene therapy potential to suppress Fanconi Anemia oral cancer risk journals.plos.org/ploscompbiol...
journals.plos.org
Epithelial competition determines gene therapy potential to suppress Fanconi Anemia oral cancer risk
Author summary We investigated factors influencing the success of oral mucosal gene therapy for Fanconi Anemia (FA), a genetic syndrome marked by DNA repair defects in conjunction with a heightened ri...
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UW Genome Sciences @uwgenome.bsky.social · 18/09/2025
Registration is now open for the Mutational Scanning Symposium!! 25-27 March 2026 Melbourne, Australia Matt Hurles (Wellcome Sanger) and Maitreya Dunham (University of Washington) Deadline for abstract submissions: 2 November 2025. www.mss2026.org
mss2026.org
MSS26
Mutational Scanning Symposium 2026, 25-27 March, Melbourne
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