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Sri Kosuri

@srikosuri.bsky.social
3.2K followers 1.2K following 84 posts

Cofounder/CEO Octant BoD Ginkgo Bioworks Defense Science Board for Emerging Biotech Fmr: Associate Professor, UCLA

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Reposted by Sri Kosuri
Stephan Hacker @stephanhacker2.bsky.social · 04/01/2026
2025 was a year full of great scientific discoveries and breakthroughs. Here, I want to highlight 10 papers that got me really excited. Of course, this is a highly subjective selection and I am sure I am forgetting some papers that I would love to include, but here it goes: (1/12)
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Addgene @addgene.bsky.social · 23/09/2025
Tags, reporters, luciferase — oh my! To celebrate the expansion of the Promega Plasmid Collection, we’re spotlighting some of our most popular blogs on the technologies researchers rely on every day — tools you can access through Addgene.
Learn the Science Behind the Tools, with Addgene and Promega logos and the Blugene mascot holding a light bulb
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Sri Kosuri @srikosuri.bsky.social · 06/07/2025
I wrote down some of my thoughts down on the current race to build virtual cell models. Overall, excited and wary about the work ahead. Also, it's my first post to Substack; getting more excited about it as a replacement for X and Blue Sky. srikosuri.substack.com/p/the-elusiv...
srikosuri.substack.com
The elusive virtual cell
Rosetta Stone or Moby Dick?
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Sri Kosuri @srikosuri.bsky.social · 09/05/2025
Lux Capital & @wolfejosh.bsky.social are launching the Lux Science Helpline - a $100M commitment to support American scientists whose research is threatened by funding cuts, bureaucratic hurdles, and career roadblocks - that expands our Lux Labs program. www.luxcapital.com/news/our-hel...
luxcapital.com
Our Helpline for American Scientists
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Sri Kosuri @srikosuri.bsky.social · 04/03/2025
An update: After the diagnosis change to AML/myeloid sarcoma, we got a lot of great input. We’ve decided to go to St Jude’s to enroll in a clinical trial. We left for Memphis yesterday. We’ll be staying here for the next several months. Anxious but ready for the path ahead.
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Sri Kosuri @srikosuri.bsky.social · 22/02/2025
Quick update: Thanks so much for the outpouring of support and help. We learned a lot in the last week and the tumor is actually a myeloid sarcoma likely derived from early AML, with the hope of possible targeted therapies as well (KMT2Ar).
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Sri Kosuri @srikosuri.bsky.social · 08/02/2025
It’s been a tough few weeks. My 10yo daughter was diagnosed with a very rare, aggressive cancer called interdigitating dendritic cell sarcoma (IDCS). I’m reaching out to identify clinicians/patients who have encountered pediatric IDCS or other (non-LCH) dendritic or histiocytic sarcomas cases.
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Sri Kosuri @srikosuri.bsky.social · 28/01/2025
Serenity now
media.tenor.com
a man in a kitchen with a sweater on that says oh no i am fine serenity now .
ALT: a man in a kitchen with a sweater on that says oh no i am fine serenity now .
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Claus Wilke @clauswilke.com · 08/01/2025
This is part of my effort of rewriting all materials for my UT Austin dataviz class in Quarto. It's going very well. Most importantly, I now have live exercises integrated into the site, thanks to Quarto live. Check it out here: wilkelab.org/SDS366/
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Willow Coyote-Maestas @willowcoyote.bsky.social · 06/01/2025
Check out our work, where we discover how receptor GPCR senses pH! We solved a longstanding question by developing foundational GPCR DMS tech dev + structural bio! Led by brilliant PhD student @matthewkhoward.bsky.social and Nick Hoppe w/ @amanglik.bsky.social! www.cell.com/cell/fulltex...
cell.com
Molecular basis of proton sensing by G protein-coupled receptors
Howard et al. combine mechanistic deep mutational scanning, cryo-EM, and constant-pH molecular dynamics simulations to provide a holistic view of proton activation in human pH-sensitive GPCRs.
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Jordan Meier @doc-jlmeier.bsky.social · 24/12/2024
Today's holiday ☕ reading is this 2024 paper on PARIS, a bacterial defense system shaped like a literal propeller that responds to viral infection by hitting the cellular self-destruct button - cleaving an essential tRNA. www.nature.com/articles/s41...
nature.com
A virally encoded tRNA neutralizes the PARIS antiviral defence system - Nature
Structural and functional studies reveal how viral proteins trigger the phage antirestriction induced system (PARIS) to degrade host tRNA and how viral tRNAs suppress the PARIS nuclease and thereby ov...
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Micha Rapé Lab @micharapelab.bsky.social · 22/12/2024
Really beautiful paper by @kjarmache.bsky.social revealing read-write mechanisms of histone ubiquitylation by Polycomb complexes - through an intricate interplay of ubiquitin binding and ubiquitin transfer. Congratulations to all authors! www.nature.com/articles/s41...
nature.com
Read–write mechanisms of H2A ubiquitination by Polycomb repressive complex 1 - Nature
Cryo-electron microscopy and biochemical studies elucidate the read–write mechanisms of non-canonical PRC1-containing RYBP in histone H2A lysine 119 monoubiquitination and their roles in maintaining e...
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Lisa Fazio @lkfazio.bsky.social · 19/12/2024
Out now - National Academies consensus report on Understanding and Addressing Misinformation About Science 🧪 It was a privilege to serve as one of the 15 committee members from a wide range of scientific disciplines who put this report together. Quick 🧵1/ www.nationalacademies.org/our-work/und...
Cover of the report - it's in a blue/purple color scheme and shows an abstract illustration of a molecule and the title of the report "Understanding and Addressing Misinformation About Science Consensus Study Report"
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Bloom lab @jbloomlab.bsky.social · 18/12/2024
In new study, we measure how all mutations to rabies G affect cell entry & antibody neutralization Sheds light on constraints on type III fusion proteins, suggests ways to stabilize G vaccine antigens, and quantifies antibody robustness to rabies variation www.biorxiv.org/content/10.1...
biorxiv.org
Deep mutational scanning of rabies glycoprotein defines mutational constraint and antibody-escape mutations
Rabies virus causes nearly 60,000 human deaths annually. Antibodies that target the rabies glycoprotein (G) are being developed as post-exposure prophylactics, but mutations in G can render such antib...
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Jeff Spence @jeffspence.github.io · 17/12/2024
What do GWAS and rare variant burden tests discover, and why? Do these studies find the most IMPORTANT genes? If not, how DO they rank genes? Here we present a surprising result: these studies actually test for SPECIFICITY! A 🧵on what this means... (🧪🧬) www.biorxiv.org/content/10.1...
biorxiv.org
Specificity, length, and luck: How genes are prioritized by rare and common variant association studies
Standard genome-wide association studies (GWAS) and rare variant burden tests are essential tools for identifying trait-relevant genes. Although these methods are conceptually similar, we show by anal...
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Sri Kosuri @srikosuri.bsky.social · 16/12/2024
The responses to this are why change is not really going to happen within the universities themselves. I’m excited that AI has the possibility to break the cost curves to broad access to education. Lots of work to do, and thanks to those putting in that work to build a brighter future.
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Pat Walters @wpwalters.bsky.social · 05/12/2024
I'm thrilled to announce a new preprint describing collaborative work with Ajay Jain and Ann Cleves Jain, "Deep-Learning Based Docking Methods: Fair Comparisons to Conventional Docking Workflows". arxiv.org/abs/2412.02889
arxiv.org
Deep-Learning Based Docking Methods: Fair Comparisons to Conventional Docking Workflows
The diffusion learning method, DiffDock, for docking small-molecule ligands into protein binding sites was recently introduced. Results included comparisons to more conventional docking approaches, wi...
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Kristian G. Andersen @kgandersen.bsky.social · 06/12/2024
"Wuhan lab samples hold no close relatives to virus behind COVID" That should settle it, right? The problem, of course, it won't because we're dealing with conspiracy theories and not scientific inquiry - no amount of additional data will change un-evidenced beliefs. www.nature.com/articles/d41...
nature.com
Wuhan lab samples hold no close relatives to virus behind COVID
Shi Zhengli, the virologist at centre of COVID lab-leak theory, reveals coronavirus sequences from Wuhan institute.
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Sri Kosuri @srikosuri.bsky.social · 05/12/2024
Is there a way to do starter pack for people to block? Would love to just block folks en masse that are cheering on the execution of a company CEO b/c they hate capitalism or whatever. It's insufferable.
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Alice Ting @aliceyting.bsky.social · 04/12/2024
Could one envision a synthetic receptor technology that is fully programmable, able to detect diverse extracellular antigens – both soluble and cell-attached – and convert that recognition into a wide range of intracellular responses, from gene expression and real-time fluorescence to modulation..
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Daphne Zohar @daphnezohar.bsky.social · 04/12/2024
Have been thinking about Brian Thompson and his family all day. This one hits home. You kiss your kids goodbye and get on a plane, eat dinner with colleagues prepare your presentation and walk toward the conference hotel. A scenario we all have lived dozens of times. The family must be devastated 😞
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Aashish Manglik @amanglik.bsky.social · 04/12/2024
First post on bsky to highlight our latest work on smell receptors (www.nature.com/articles/s41...). Odorant receptors are notoriously challenging to work with - we used a classic strategy from protein engineering to get a peek into how these receptors recognize such a diversity of smells.
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 04/12/2024
go.bsky.app/QTL6EqT
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Kristian G. Andersen @kgandersen.bsky.social · 03/12/2024
The final report from the COVID Sub Committee is released and it is as expected given that the origin "has been contorted by politics, while scientific discourse has been abandoned in pursuit of a preferred, coordinated narrative", as I stated in my written testimony. BUT, there's a bombshell.. 🧵👇
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Kevin K. Yang 楊凱筌 @kevinkaichuang.bsky.social · 03/12/2024
Three BioML starter packs now! Pack 1: go.bsky.app/2VWBcCd Pack 2: go.bsky.app/Bw84Hmc Pack 3: go.bsky.app/NAKYUok DM if you want to be included (or nominate people who should be!)
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Brian Naughton @btnaughton.bsky.social · 30/11/2024
New blogpost: The ABCs of Alphafold 3, Boltz and Chai-1 blog.booleanbiotech.com/alphafold3-b...
blog.booleanbiotech.com
Boolean Biotech
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Harris Wang @harriswang.bsky.social · 30/11/2024
💡💥Here’s a modest proposal I’ve been pondering for a while on how to change the PEER REVIEW process and start more community-driven SCIENCE FUNDING. Lots of feedback/discussion welcomed! Other variants of the idea might exist already—not claiming originality. (a long 🧵) (1/9)
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Sri Kosuri @srikosuri.bsky.social · 30/11/2024
Anyone’s dm’s still broken? I keep on getting an error called “bad token method”. DMs haven’t worked from the start for me. I’ve tried reinstalling the app and logging off and then back in. Anyone have any fixes?
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Veera Rajagopal @doctorveera.bsky.social · 29/11/2024
Heterozygous mutations in leptin receptor gene (LEPR) do not cause obesity. The finding goes against the rationale for a recent clinical trial that test setmelanotide for obesity treatment in heterozygous carriers of LEPR variants. Delplanque et al. AJHG www.sciencedirect.com/science/arti...
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Thiago Carvalho @cyrilpedia.bsky.social · 24/11/2024
Your periodic reminder: read the 8th Day of Creation "The basic principles of the genetic code & the molecular biology of prokaryotes were established in the years between (1953 & 1973) as documented in extraordinary detail in 1979 by Horace Freeland Judson in the “Eighth Day of Creation”
cell.com
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Soragni:Lab @alice.soragnilab.com · 23/11/2024
We are hiring! We are looking for a Project Scientist to be in charge of the day-to-day operation of our tumor organoid pipeline. Come join our team of rare cancer aficionados looking to leverage organoids for functional precision medicine. Apply by November 24th! recruit.apo.ucla.edu/JPF09960
recruit.apo.ucla.edu
Project Scientist
University of California, Los Angeles is hiring. Apply now!
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Sri Kosuri @srikosuri.bsky.social · 23/11/2024
Cool history! New Innovator was amazing for my career. It allowed me to focus on my research right off the bat. Getting it all at once was awesome too because I could use it instead of my startup (and reclaim some overhead). FYI: I posted my app here many years ago: www.kosurilab.org/blog/new-inv...
kosurilab.org
New investigator Grant Applications
I feel lucky to have gone through the Church Lab when I did, as I got to work with some really great people. While I was there, many of them left to become faculty elsewhere including  Gautam Dantas.....
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David Rand @dgrand.bsky.social · 12/09/2024
🚨Out in Science!🚨 Conspiracy beliefs famously resist correction, ya? WRONG: We show brief convos w GPT4 reduce conspiracy beliefs by ~20%! -Lasts over 2mo -Works on entrenched beliefs -Tailored AI response rebuts specific evidence offered by believers www.science.org/doi/10.1126/...
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Sri Kosuri @srikosuri.bsky.social · 21/11/2024
Octant Thanksgiving!
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Sam Blackman 🥖 @drsam.bsky.social · 19/11/2024
Had the privilege of being at the Atlas Venture retreat to see Bruce Booth give his “Year in Review 2024” talk and they managed to get it up online the next day. Well worth the watch (as always). We need to find a way to get Bruce over here to Bluesky #biotech. youtu.be/szwRUERnoOM?...
youtu.be
Atlas Venture 2024 Year in Review - B. Booth
YouTube video by Atlas Venture
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Michael Ward @michael-e-ward.bsky.social · 21/11/2024
www.nature.com/articles/d41...
nature.com
Common genetic variants contribute more to rare diseases than previously thought
Assessing the influence of common mutations on rare disease risk.
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Jeremy Berg @jeremymberg.bsky.social · 20/11/2024
A thread on NIH Reorganization and the Scientific Management Review Board (SMRB) Disclosure: I was involved with the SMRB since its inception and have very strong feelings about how it was used, misused, and abandoned. My passion on these issues will undoubtably show through. 1/n
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Jason Kelly @jasonrkelly.bsky.social · 20/11/2024
Made a biotech founders starter pack, DM me to be added! go.bsky.app/LWm8uPE
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Simon Bayly @simonbayly.bsky.social · 20/11/2024
It’s not an AI drug discovery company, but at the same time it is. Yes, it’s Schrödinger www.statnews.com/2024/11/20/s...
statnews.com
AI in drug discovery is ‘nonsense,’ but call Schrödinger ‘AI’ if you want, says CEO
Ramy Farid of Schrödinger maintains that AI drug discovery won't work unless physics-based calculations are part of the picture.
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Timothy Stiles @stiles.io · 19/11/2024
Made this one a week ago and could update it to include more go.bsky.app/TbKxUEk
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Calin Plesa @calin.bsky.social · 12/11/2024
Started creating a synthetic biology starter pack. Still missing many so reply here if I forgot you or someone else. go.bsky.app/SjfpxTK #synbio
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Berkley Lynch @berkleylynch.bsky.social · 19/11/2024
Two new non-prescription continuous glucose monitors have just been approved by the FDA for use by the general population, no longer limiting their use primarily to diabetics. www.cnet.com/health/medic...
cnet.com
Lingo CGM Review: I've Sweetened on the Idea Everybody Should Track Their Blood Sugar
Waiting on Apple to add glucose tracking on a smartwatch to learn about your blood sugar? Don't. Try a biosensor instead.
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Endpoints News @endpts.com · 19/11/2024
We're here now!
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Simon Bayly @simonbayly.bsky.social · 19/11/2024
Here's my starter pack go.bsky.app/36QCKD2
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Greg Medlock @gregmedlock.bsky.social · 10/11/2024
I’m creating a drug development starter pack, reach out to join or suggest additions: go.bsky.app/B2pzQm2
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Sri Kosuri @srikosuri.bsky.social · 19/11/2024
Are there a lot of biotech folks on here? Is there a starter pack yet? Should I start one?
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Sri Kosuri @srikosuri.bsky.social · 17/11/2024
Baker lab not slowing down post Nobel. Here they are getting at engineering signaling dynamics using protein design. Super cool frontier and love this direction. www.biorxiv.org/content/10.1...
biorxiv.org
Design of facilitated dissociation enables control over cytokine signaling duration
Protein design has focused primarily on the design of ground states, ensuring they are sufficiently low energy to be highly populated. Designing the kinetics and dynamics of a system requires, in addi...
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Sri Kosuri @srikosuri.bsky.social · 16/11/2024
One of the more visceral things in being surrounded by the tech industry after academia is 20-30 yo are given vastly more responsibility & power, which leads to a diff culture. It maybe even a little too much on the other side (like >40yo are assumed to be out of touch). H/t @pracheeac.bsky.social
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Eric Topol @erictopol.bsky.social · 16/11/2024
How transformer #AI models are transforming www.wsj.com/tech/ai/a-po... by @mims.bsky.social
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