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Naomichi Takemata

@naomichitakemata.bsky.social
150 followers 149 following 26 posts

Studying archaeal 3D genomes at Ritsumeikan University, Japan scholar.google.co.jp/citations?user…

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Reposted by Naomichi Takemata
Svetlana Dodonova @dodonova-sveta.bsky.social · 30/09/2026
New preprint from Dodonova lab 🔔! Capturing multiple states by cryo-EM❄️, we show for the first time how archaeal RNA Polymerase engages a nucleosome and forms direct contacts with histones! 🧬 Great work by Gabriele & a fantastic collaboration with Dina Grohmann! 🧵 www.biorxiv.org/content/10.6...
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Florian Mayer @florianmayer.bsky.social · 11/09/2026
Excited to share our preprint on Ignicoccus cell divison: only the inner membrane divides, progeny cells accumulate in cell clusters and pop-out! www.biorxiv.org/content/10.6... Great work with the labs: @buzzbaum.bsky.social @curiousdina.bsky.social @anja1.bsky.social @tbharat-lab.bsky.social
biorxiv.org
The life cycle of an archaeon with multiple membranes
Many prokaryotes are diderms. They divide using an FtsZ division ring to simultaneously constrict physically coupled inner and outer membranes to form daughter cells with two membranes. Currently, onl...
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Reposted by Naomichi Takemata
Buzz Baum @buzzbaum.bsky.social · 22/09/2026
We are looking for a research assistant! Come join the team: www.jobs.ac.uk/job/DSZ826/r...
jobs.ac.uk
Research Support Officer | Cell Biology | Dr Buzz Baum | LMB 2904 at MRC Laboratory of Molecular Biology
Start your UK & international job search for academic jobs, research jobs, science jobs and managerial jobs in leading universities and top...
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bioRxiv Developmental Biology @biorxiv-devbio.bsky.social · 07/03/2026
MEIOSIN retains an intrinsic STRA8-independent activity that drives meiotic entry across vertebrate evolution www.biorxiv.org/content/10.64898/20…
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Anthony Vecchiarelli @cellforganized.bsky.social · 19/09/2026
Applications are now being accepted for the 2027 Bacterial Cell Biology & Development GRC, June 6–11! GRS will be on June 5-6, 2027 We’ll likely be oversubscribed, so please apply early!
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RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS @aribio.bsky.social · 15/09/2026
PAPER ALERT!!! For over 20 years, circular pre-rRNA intermediates were thought to be a specific and universal requirement for archaeal ribosome biogenesis. doi.org/10.1261/rna.... #Archaea #Ribosome #RNAProcessing #Archaeasky #RNAsky
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Bungo Akiyoshi @bungoakiyoshi.bsky.social · 14/09/2026
New preprint from the lab. We developed the first protein depletion method in Diplonema papillatum!
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Reposted by Naomichi Takemata
Kazuhiro Maeshima @kazu-maeshima.bsky.social · 15/09/2026
How are mitotic chromosomes built? Our Review @cp-trendsgenetics.bsky.social revisits the classical chromosome scaffold model and connects it to condensins, topoIIα, and physical forces. We propose interphase chromatin domains as “building blocks”🧩of chromosomes: authors.elsevier.com/a/1nmwrcQbJI...
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Buzz Baum @buzzbaum.bsky.social · 11/09/2026
If you thought you understood how one cell becomes two (and imagined studying the problem using an organism that lives in deep sea volcanic vents was impossible), read Florian’s paper and think again!
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Buzz Baum @buzzbaum.bsky.social · 11/09/2026
The brilliant Kris Kuo, with help from Fabian and the Werner lab, has identified a key driver of cyclic gene expression in Sulfolobus, which has a cell cycle but no CDK/cyclins. Amazingly, TFB2 has a cyclin box that regulates its degradation as cells exit division. Another reason to love archaea!
biorxiv.org
A TFIIB paralog drives cyclic transcription to orchestrate the archaeal cell cycle
Cyclic transcription is a hallmark of the cell cycle. While transcriptional waves in eukaryotes are driven by oscillations in cyclin-dependent kinase (CDK) activity, many archaea have an ordered cell ...
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Reposted by Naomichi Takemata
Kazuhiro Maeshima @kazu-maeshima.bsky.social · 08/09/2026
Is euchromatin really “open”? 🧬 Using super-resolution imaging🔬 our new study @natgenet.nature.com reveals: Euchromatin forms condensed domains in live cells. Cohesin constrains them and prevents domain mixing for proper transcriptional insulation🚧 🔗 www.nature.com/articles/s41... (1/2)
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Anton Goloborodko @golobor.bsky.social · 03/09/2026
1/ out in @science.org! We found a new asymmetry in large-scale chromosome structure: sister chromatids are shifted by hundreds of kb in the 5′→3′ direction of their inherited strands! A close collaboration w/ @gerlichlab.bsky.social , led by @flaviacorsi.bsky.social www.science.org/doi/10.1126/...
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Peter Carlton @carltonlab.org · 28/08/2026
🇦🇺↔🇯🇵 for undergrad/masters students studying in Australia and interested in short-term research opportunities this summer (Jan 7 – Feb 18 2027) - please check out Kyoto University's KU-STAR program: www.kugd.k.kyoto-u.ac.jp/en/ku-star-p... ! Application deadline is Sep. 25, happy to take questions.
kugd.k.kyoto-u.ac.jp
KU-STAR Program AUS
What’s the KU-STAR Program? KU-STAR Program, Kyoto University Short-Term Academic Research Pro
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Mart Krupovic @mkrupovic.bsky.social · 26/08/2026
Check out our paper on ESCRTs in large DNA viruses. Most enveloped viruses use the host #ESCRT for envelopment, but only mirusviruses and nucleocytoviricots encode it! Congrats @sonaida.bsky.social, @tomdelmont.bsky.social, Ulysse Guyet & Eugene Koonin. @pasteur.fr www.nature.com/articles/s41...
nature.com
Large eukaryotic DNA viruses encode ESCRT machinery for membrane remodelling - Nature Microbiology
A genomic screen reveals homologues of ESCRT components in mirusviruses that infect unicellular aquatic eukaryotes.
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Naomichi Takemata @naomichitakemata.bsky.social · 23/08/2026
Fantastic work!
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Reposted by Naomichi Takemata
Bungo Akiyoshi @bungoakiyoshi.bsky.social · 15/08/2026
New preprint from the lab! One reason why I chose work on trypanosomes is to address this question "How do they determine kinetochore position without a centromeric histone H3 variant, CENP-A/CenH3?" After working on this question for 16 years, we finally got a clue
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Bungo Akiyoshi @bungoakiyoshi.bsky.social · 15/08/2026
Now accepted in Journal of Cell Science @jcellsci.bsky.social doi.org/10.1242/jcs....
doi.org
Identification of feeding apparatus components in a heterotrophic marine flagellate
Diplonemids are highly abundant heterotrophic single-celled flagellates that are widespread in the world's ocean. They have a highly complex microtubule-based feeding apparatus (cytostome-cytopharynx ...
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Tung Le @tunglejic.bsky.social · 11/08/2026
Now published in JBac. Absolutely great publishing experience!!! Thank you to editors and reviewers.https://journals.asm.org/doi/10.1128/jb.00286-26 Another great one from @tommclean.bsky.social @johninnescentre.bsky.social @hbio-isp.bsky.social
journals.asm.org
TrbA binds and locks a sliding clamp KorB to repress transcription on multi-drug resistance plasmids | Journal of Bacteriology
Precise regulation of gene expression ensures gene products are produced at the right time and in the right amounts. Recent works uncovered a new mechanism of bacterial gene regulation based on a clamp sliding and locking in a multi-drug resistance plasmid, RK2. KorB functions as a CTP-dependent DNA-sliding clamp capable of traveling over a long genomic distance. Sliding KorB is captured and locked in place by a partner protein, KorA, forming a stable complex at target promoters to repress transcription. Here, we show that another RK2 regulator, TrbA, also uses this clamp sliding-locking mechanism, and identify an aromatic interface enabling TrbA-KorB-mediated transcriptional repression. Our findings show how a single sliding clamp integrates multiple partners to build a complex transcriptional regulatory network.
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Mariko Sasaki @marikosasakiatnig.bsky.social · 06/08/2026
The Sasaki lab at the National Institute of Genetics in Japan are seeking for highly motivated PhD students to work on extrachromosomal circular DNA, gene amplification, genome stability, and cancer genome dynamics, starting in October 2027. Please see below and apply by August 31.
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Shamphavi Sivabalasarma @sshamphavi.bsky.social · 06/08/2026
Hot, acidic and an endlessly fascinating archaeal model organism! Check out our review on Sulfolobus acidocaldarius🥳
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Peter Carlton @carltonlab.org · 03/08/2026
Our latest publication is on bioRχiv! — a study of the meiotic double-strand break machinery, focused on C. elegans but using the extensive genomic resources available for the whole genus to learn more about how SPO-11 and its cofactors work together to break DNA www.biorxiv.org/content/10.6...
biorxiv.org
Multifaceted and evolutionarily dynamic interactions between Caenorhabditis elegans SPO-11 and its cofactors ensure proper formation of meiotic DNA double-strand breaks
DNA double-strand breaks (DSBs) generated during meiotic prophase by the topoisomerase-like protein SPO11 are essential to create crossovers between homologous chromosomes. Since crossovers are requir...
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Reposted by Naomichi Takemata
Tobias Warnecke @tobiaswarnecke.bsky.social · 29/07/2026
Bacteriocins in archaea and archaeocins in bacteria. @romainstrock.bsky.social surveys the the exchange of molecular weaponry between archaea and bacteria. www.biorxiv.org/content/10.6...
biorxiv.org
Bacteriocins in archaea and archaeocins in bacteria
Archaea and bacteria routinely live side by side in microbial communities and must interact at least on occasion. Whether such cross-Domain interactions are dominated by mutual disregard, co-operation...
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Reposted by Naomichi Takemata
Buzz Baum @buzzbaum.bsky.social · 26/06/2026
Archaeaophiles! Last chance to sign up as a virtual attendee for MBoA2026. It’s cheap and you will have access to all the talks include our archaea@50 celebration with a special guest: meetings.embo.org/event/26-arc...
meetings.embo.org
Molecular Biology of Archaea: Life Through the Prism of Archaea
In 1977, Woese and colleagues revealed Archaea as a distinct domain of life. Building on this insight, the discovery of Asgard archaea has strengthened the view that many hallmarks of eukaryotic cell…
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Naomichi Takemata @naomichitakemata.bsky.social · 19/06/2026
Excited to be part of this fantastic project!
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Reposted by Naomichi Takemata
Tobias Warnecke @tobiaswarnecke.bsky.social · 11/06/2026
Archaea are the hornets of the microbial world. Discuss. www.biorxiv.org/content/10.6... TLDR: Archaeon kills bacterium with secreted phospholipase. Pretty nifty way to kill bacteria for a microbe with a very different lipid make-up, I reckon. No need to worry about accidentally killing yourself.
biorxiv.org
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Tung Le @tunglejic.bsky.social · 08/06/2026
now published!!! @johninnescentre.bsky.social @leahmcphillips.bsky.social academic.oup.com/nar/article/...
academic.oup.com
Stable inheritance of the Streptomyces linear plasmid SCP1 by dual ParABS partition systems
Abstract. Low-copy-number plasmids often rely on dedicated maintenance mechanisms, such as partitioning systems, to ensure stable inheritance across genera
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Reposted by Naomichi Takemata
Sonja-Verena Albers @archaellum.bsky.social · 20/05/2026
New preprint! Cell division has to happen at the right place but how Archaea pick that place is unknown. We now identified a three-protein system, Dip, that positions the divisome at midcell in H. volcanii and is broadly conserved across Archaea. A thread 🧵 www.biorxiv.org/content/10.6...
biorxiv.org
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Alex Bisson @archaeon-alex.bsky.social · 05/05/2026
The Bisson Lab at IU (bissonlab.com) is hiring makers/builders/engineers across all career stages to join our team in one of the most exciting and crazy projects I've set to work on. Candidates can email us: saltylab@iu.edu More info in the thread [1/3]
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Anton Goloborodko @golobor.bsky.social · 06/05/2026
how does loop extrusion and chromatid cohesion interact in interphase? Find out in our latest collaboration with Gerlich lab | | | vvv
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Takashi Fukaya @fukayalab.bsky.social · 03/05/2026
New preprint alert! Together with Tetsuya Yamamoto at Hokkaido University, we propose a “polymer micelle” model of transcriptional bursting. www.biorxiv.org/content/10.6...
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Kazuhiro Maeshima @kazu-maeshima.bsky.social · 01/05/2026
Our new preprint! 🧬✨ www.biorxiv.org/cgi/content/... @ynagata.bsky.social et al. combined single-nucleosome imaging with Fucci probes to follow local chromatin behavior during interphase. Local nucleosome motion stays nearly constant from G1 to G2, except in early G1. Thanks to all coauthors!
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Wataru Kobayashi @wkobayashi.bsky.social · 30/04/2026
🚨Pls repost!🚨 I'm looking for a postdoc who will lead the research investigating the mechanisms of epigenetic reprogramming using mouse embryos. Background in chromatin biology and genomics is desirable. The application deadline is 28 May. Please apply here!! www.dundee.ac.uk/work-for-us/...
dundee.ac.uk
Postdoctoral Research Assistant
Closing date: Thursday 28 May 2026, 23:59
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Ed Banigan @irate-physicist.bsky.social · 29/04/2026
Paper published! PDS5 proteins control genome architecture by limiting the lifetime of cohesin-NIPBL complexes -PDS5 facilitate NIPBL dissociation from cohesin, stopping loop extrusion -Extrusion governs chrm compartmentalization by competing w/polymer relaxation authors.elsevier.com/sd/article/S...
cell.com
PDS5 proteins control genome architecture by limiting the lifetime of cohesin-NIPBL complexes
PDS5 proteins regulate genome organization by halting cohesin-mediated loop extrusion. Wutz et al. show that PDS5 promotes NIPBL dissociation from cohesin, enabling CTCF boundary formation and proper ...
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The Molecular Biology Society of Japan (MBSJ) @mbsj-official.bsky.social · 27/04/2026
【NEWS】EMBO–MBSJ Laboratory Leadership Forum 2026 in Tokyo Institute of Science Tokyo Yushima Campus, M&D Tower Saturday, June 27, 2026 To foster diverse perspectives in the discussions, we also encourage applications from women researchers. sites.google.com/view/embo-mb...
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Mahipal Ganji @ganjilab.bsky.social · 26/04/2026
Our latest paper is online. www.nature.com/articles/s41... We expanded the speed-optimized DNA-PAINT sequences from 6 to 12 — enabling faster, higher-resolution multiplexed super-resolution imaging of up to 10 cellular targets. Here's the story. 1/n
nature.com
High-speed multiplexed DNA-PAINT imaging of nuclear organization using an expanded sequence repertoire - Nature Communications
Banerjee, Anand, and colleagues present an expanded speed-optimized DNA-PAINT sequence repertoire. This repertoire allows for improved multiplexing capability in super-resolution imaging, maintaining ...
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Azusa Kage @azusakage.bsky.social · 24/04/2026
Now published in @cytoskeljournal.bsky.social !🎉 Diurnal Regulation of Flagellar Length and Swimming Speed in the Red-Tide Raphidophyte Chattonella marina 🔗 doi.org/10.1002/cm.7... © 2026 Wiley #protistsonsky
doi.org
Diurnal Regulation of Flagellar Length and Swimming Speed in the Red‐Tide Raphidophyte Chattonella marina
The raphidophyte Chattonella marina is a harmful algal bloom (HAB) species known for its distinct diurnal vertical migration (DVM), a behavior important for its survival and bloom formation. However,...
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Arthur Charles-Orszag @acharlesorszag.bsky.social · 20/04/2026
🚨Hear, hear, fellow microbial cell biologists!🚨 🦠 Bacterial and Archaeal Cell Biology will be represented again at this year’s CELL BIO (ASCB-EMBO) meeting! The deadline to be considered for a talk in our Minisymposium is June 9. Help us spread the word! www.ascb.org/cellbio2026/
ascb.org
Cell Bio 2023-An ASCB|EMBO Meeting
Network, learn, and collaborate with top cell biologists from around the globe.
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Kyogo Kawaguchi @kyogok.bsky.social · 18/04/2026
Hearts have topological defects. By treating the mouse myocardium as a 3D nematic, we found disclination lines threading through it. In situs inversus hearts, twist must match structural chirality for contraction to work, as found by quantifying the nematic chirality. biorxiv.org/content/10.6...
biorxiv.org
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Tung Le @tunglejic.bsky.social · 16/04/2026
Finally published. Many thanks to a wonderful collaborative team and scientific platforms!!! And thanks to editors and reviewers for enthusiasm and a great review. www.nature.com/articles/s41...
nature.com
A bacterial CARD–NLR-like immune system controls the release of gene transfer agents - Nature Microbiology
An immunity-like system functions as a lysis control hub to promote gene transfer agent particle release from host bacterial cells, suggesting that bacterial immune systems may be co-opted to promote ...
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Duncan Sproul @sproullab.bsky.social · 10/04/2026
Very pleased to say that the paper version of our study examining the role of de novo DNMTs in cancer-associated hypomethylation is now out in @plos.org Genetics 🎉: doi.org/10.1371/jour... You can read more on the previous thread but here is a summary of the main updates! #epigenetics 🧵 1/9
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Hironori Funabiki @hirofunabiki.bsky.social · 09/04/2026
Excited to share our structural insights into how microtubules differentially guide phosphorylation of kinetochore-microtubule regulators, Ndc80 and MCAK, for chromosome segregation. Heroic efforts by Yiming Niu with a fun collaboration with Jennifer DeLuca lab! www.science.org/doi/10.1126/...
science.org
Microtubules guide Aurora B substrate geometries for accurate chromosome segregation
Cryo-EM reveals how kinetochore-microtubule attachment is regulated by Aurora B substrate accessibility on microtubules.
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Masa A. Shimazoe @masaashimazoe.bsky.social · 09/04/2026
My first, first author paper is now on #ScienceAdvances ! Linker histone H1 is a liquid-like "glue" condensing chromatin, which revises textbooks! 📖✨ science.org/doi/10.1126/sc… Huge thanks to @kazu-maeshima.bsky.social , for supervision. Amazing collab with @rcollepardo.bsky.social ’s group! 1/
science.org
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Buzz Baum @buzzbaum.bsky.social · 09/04/2026
🧬 Last call to join us in Cambridge for #EMBOMBoA26 (July 6th-10th)! We are just one week away from the registration and abstract submission deadline for the EMBO Workshop on the Molecular Biology of Archaea!
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Naomichi Takemata @naomichitakemata.bsky.social · 09/04/2026
【拡散希望】私も運営に携わらせてもらっているEMBO–MBSJ Laboratory Leadership Forumが6月27日に東京で開催されます!ラボ運営に必要なスキルについて学べる貴重な機会だと思いますので、みなさん是非ご参加ください!
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The Molecular Biology Society of Japan (MBSJ) @mbsj-official.bsky.social · 08/04/2026
【NEWS】EMBO–MBSJ Laboratory Leadership Forum 2026 in Tokyo Institute of Science Tokyo Yushima Campus, M&D Tower (formerly Tokyo Medical and Dental University) Saturday, June 27, 2026 sites.google.com/view/embo-mb...
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Tobias Warnecke @tobiaswarnecke.bsky.social · 08/04/2026
I wrote an essay. It’s about gain-of-function mutations. And penguins. Also ion channels, chihuahuas, the film Alien, recycled cardboard, and the Apollonian mind. Oh, and muffins. Thanks to the editors of #GENETICS @genetics-gsa.bsky.social for letting me take some stylistic liberties. 1/2
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Takashi Akera Lab @takashiakeralab.bsky.social · 08/04/2026
🚨Another open position in the lab! A long-term Staff Scientist position for people who love working on the bench!!👩🏻‍🔬👨‍🔬The Staff Scientist will function semi-independently in the lab to manage multiple projects 🧬🐭🔬#meiosis4eva
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Takashi Fukaya @fukayalab.bsky.social · 02/04/2026
Happy to have been part of the study! “Transient residence of the repulsive client Shutdown in Yb bodies plays a critical role in Piwi-piRISC biogenesis and maintaining fertility” www.cell.com/molecular-ce...
cell.com
Transient residence of the repulsive client Shutdown in Yb bodies plays a critical role in Piwi-piRISC biogenesis and maintaining fertility
Hirakata et al. reveal that Shutdown rapidly returns from Yb bodies to the cytosol through its repulsive N-terminal property. This dynamic release enables piRNA maturation and safeguards fertility, pr...
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Bungo Akiyoshi @bungoakiyoshi.bsky.social · 01/04/2026
New preprint! We identified many components that localize to the structure involved in "eating" in a marine organism. #ProtistOnSky #diplonemid www.biorxiv.org/content/10.6...
biorxiv.org
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