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RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS

@aribio.bsky.social
539 followers 219 following 17 posts

In Ribosome we Trust!!! Ferreira-Cerca group at the Structural Biology of the Cell laboratory (BIOC) @CNRS / @École polytechnique More information available at ferreiracercalab.com #archaea #Ribosome #RNA

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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Archaea Biology Vienna @archaea-vienna.bsky.social · 01/10/2026
Our paper on the dynamics of Asgard archaea (Promethearchaeota) is now out in Nature! Huge thanks to the reviewers for helping make the manuscript stronger. www.nature.com/articles/s41... Two “Lokis” stained for Lokiactin (FastAct, magenta), reaching toward each other to celebrate 🎉 #archaea
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
CNRS Biologie @cnrsbiologie.bsky.social · 25/09/2026
#ResultatScientifique🔎| Chez les archées, comment l’ARN ribosomique arrive-t-il à maturité ? 🧬 ▶️ buff.ly/2lBzCQg ✍️ Sébastien Ferreira-Cerca 🤝@cnrs-paris-saclay.bsky.social @polytechniqueparis.bsky.social @aribio.bsky.social
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Diversité des voies de maturation de l’ARNr chez les archées
Les arch&eacut
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Craig Kaplan @triggerloop.bsky.social · 25/09/2026
Cryo-EM peeps are living the dream www.science.org/doi/10.1126/...
science.org
In-cell structures visualize human pre-ribosome assembly in the nucleolus
In eukaryotes, ribosome biogenesis initiates within the nucleolus, a hallmark multilayered compartment of the nucleus. Structures of pre-ribosomes have been characterized ex situ, but their assembly p...
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Simonetta Gribaldo @sgribaldo.bsky.social · 23/09/2026
Interested in #archaea, #methane, #cell-envelopes? New paper out @nature.com ! We discovered an enzyme that specifically cleaves the cell wall of methanogens, revealing a new chemical structure of archaeal peptidoglycan, 50 yrs after its first description www.nature.com/articles/s41... #MicroSky 🧵👇
nature.com
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
bioRxivpreprint @biorxivpreprint.bsky.social · 22/09/2026
A Yeast Logic Toolkit for Fast and Efficient Assembly of Genetic Circuits www.biorxiv.org/content/10.64898/20…
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Kranzusch Lab @kranzuschlab.bsky.social · 17/09/2026
New enzymes that create natural phosphorothioate modifications in RNA share homology with proteins in bacterial DndABCDE anti-phage defense! www.cell.com/cell/abstrac...
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 17/09/2026
Ribosome profiling reveals translational dynamics between an archaeal virus and its host www.biorxiv.org/content/10.6...
biorxiv.org
Ribosome profiling reveals translational dynamics between an archaeal virus and its host
Host-virus interactions remain poorly understood in archaea, whose information processing systems harbor a mosaic of bacterial and eukaryotic features. Here, we used complementary multiomics to invest...
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 17/09/2026
16S rRNA Modifications Are Dispensable for Viability but Collectively Optimize Ribosome Biogenesis and Translation Initiation in Escherichia coli www.biorxiv.org/content/10.6...
biorxiv.org
16S rRNA Modifications Are Dispensable for Viability but Collectively Optimize Ribosome Biogenesis and Translation Initiation in Escherichia coli
Ribosomal RNAs contain numerous conserved nucleotide modifications, yet the functional importance of most of these modifications remains unclear. In Escherichia coli , deletion of individual 16S rRNA ...
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RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS @aribio.bsky.social · 15/09/2026
PAPER ALERT!!! For over 20 years, circular pre-rRNA intermediates were thought to be a specific and universal requirement for archaeal ribosome biogenesis. doi.org/10.1261/rna.... #Archaea #Ribosome #RNAProcessing #Archaeasky #RNAsky
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Beckmann Lab @beckmannlab.bsky.social · 14/09/2026
New preprint! 👀RNAse activity has to be tightly regulated.✂️🧬Here, we present the dynamic architecture of the conserved Rixosome complex – a major player in ribosome maturation and heterochromatin maintenance. Our results give insights into its mode of activation.👇 #cryoEM #Ribosome #RNA
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Fabian Blombach @fblombach.bsky.social · 11/09/2026
Gene duplication of initiation factor TFIIB drove eukaryotic inventions like the RNA polymerase I, II and III split and probably cyclins. With Kris Kuo and @buzzbaum.bsky.social, we show that the archaeal TFIIB paralogue TFB2 enables a regulated cell cycle in archaea. www.biorxiv.org/content/10.6...
biorxiv.org
A TFIIB paralog drives cyclic transcription to orchestrate the archaeal cell cycle
Cyclic transcription is a hallmark of the cell cycle. While transcriptional waves in eukaryotes are driven by oscillations in cyclin-dependent kinase (CDK) activity, many archaea have an ordered cell ...
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
STCmicrobeblog @stcmicrobeblog.bsky.social · 11/09/2026
just a few more #ProtistsOnSky 😊
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 11/09/2026
Resistance to antibacterial peptide nucleic acids through altered ribosome function 🦠 www.biorxiv.org/content/10.6...
biorxiv.org
Resistance to antibacterial peptide nucleic acids through altered ribosome function
When used as antibacterial agents, Peptide Nucleic Acid (PNAs) are generally designed to base-pair with complementary sequences of an essential mRNA and block translation initiation. Although bacteria...
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 11/09/2026
Atlas of stress-induced changes in yeast tRNA modification levels www.biorxiv.org/content/10.6... with a major impact of pH on U34 modification
biorxiv.org
Atlas of stress-induced changes in yeast tRNA modification levels
Transfer RNA (tRNA) modifications are essential for accurate translation and cellular adaptation to environmental changes. Although short-term modification dynamics are well documented, the impact of ...
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Florian Mayer @florianmayer.bsky.social · 11/09/2026
Excited to share our preprint on Ignicoccus cell divison: only the inner membrane divides, progeny cells accumulate in cell clusters and pop-out! www.biorxiv.org/content/10.6... Great work with the labs: @buzzbaum.bsky.social @curiousdina.bsky.social @anja1.bsky.social @tbharat-lab.bsky.social
biorxiv.org
The life cycle of an archaeon with multiple membranes
Many prokaryotes are diderms. They divide using an FtsZ division ring to simultaneously constrict physically coupled inner and outer membranes to form daughter cells with two membranes. Currently, onl...
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Molecular Microbiology @molmicrounihoh.bsky.social · 07/09/2026
super interesting paper: 👇 Evolutionary Maintenance of Amino Acid Prototrophy in Escherichia coli! academic.oup.com/gbe/article/...
academic.oup.com
The Evolutionary Maintenance of Amino Acid Prototrophy in Escherichia coli
Abstract. Escherichia coli is a prototroph and can synthesize all twenty proteinogenic amino acids when required to grow in minimal medium. There are appro
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
DEEMteam_Orsay @deemteam.bsky.social · 04/09/2026
Databases may contain lots of misannotated 16S rRNA sequences, which can hinder accurate taxonomic assignment in metabarcoding and metagenomic analyses. We have addressed this issue for Asgard archaea and generated a curated set of high-quality 16S rRNA sequences: academic.oup.com/ismecommun/a...
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
bioRxivpreprint @biorxivpreprint.bsky.social · 04/09/2026
Multi-foci replication domains in Haloferax volcanii visualised by super-resolution microscopy www.biorxiv.org/content/10.64898/20…
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Wilson Lab @wilsonlab.bsky.social · 03/09/2026
www.nature.com/articles/s41...
nature.com
Rewiring the ribosome to translate proteins encoded in its own RNA - Nature
Bacterial ribosomes can synthesize proteins encoded within their own RNA.
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Beckmann Lab @beckmannlab.bsky.social · 01/09/2026
Preprint alert: a helicase watching the ribosomal A-site 👀🧬 Our cryo-EM structure reveals how yeast Dhx29 senses mRNA hairpins forming in the A-site and positions its helicase at the mRNA entry channel to resolve them during translation elongation: doi.org/10.64898/202... #cryoEM #ribosome #RNA
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Jonathan Bohlen @jonathanbohlen.bsky.social · 31/08/2026
🧬 New preprint: "Selection and surveillance of 5S ribosomal RNA genes in human populations." The 5S rRNA genes sit in a ~80-copy array on chromosome 1, one of the least-explored parts of the genome. We traced its variation from DNA to ribosome. 1/4🧵
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Nobuto Takeuchi @nobuto.bsky.social · 28/08/2026
Sharing our new paper, led by PhD student Daniel Harrison. We propose that archaea aren't pathogenic because those living in eukaryotic hosts lack a metabolic prerequisite, and those with the prerequisite don't live in eukaryotic hosts. #microsky doi.org/10.1128/mbio...
journals.asm.org
Why are archaea not pathogenic? A hypothesis based on metabolism-habitat covariation | mBio
Pathogenicity—the ability to cause infectious disease—is widespread among bacteria and eukaryotes but conspicuously absent from archaea, the third domain of life. To understand why archaea are non-pat...
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Jamie Cate @jhdcate.bsky.social · 27/08/2026
And work from the labs of Nicolas Leulliot and Alexandre Smirnov here. 6/ www.biorxiv.org/content/10.6...
biorxiv.org
Universally conserved isoasparylation sustains ribosome biogenesis and function
All living beings use ribosomes to synthesize proteins from α-amino acids. Inherited from our common ancestor, a few universally conserved ribosome biogenesis steps, introducing essential ribosomal RN...
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Jamie Cate @jhdcate.bsky.social · 27/08/2026
Congrats to the authors of the two teams who discovered these enzymes! Ours here. 5/ www.biorxiv.org/content/10.6...
biorxiv.org
Enzymatic formation of a conserved isoaspartate in ribosomal protein uS11
Isoaspartate (isoAsp) formation is typically viewed as a "molecular clock" through nonenzymatic degradation of aspartate or asparagine during protein aging. Here we report a nearly universal enzymatic...
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Mart Krupovic @mkrupovic.bsky.social · 26/08/2026
Check out our paper on ESCRTs in large DNA viruses. Most enveloped viruses use the host #ESCRT for envelopment, but only mirusviruses and nucleocytoviricots encode it! Congrats @sonaida.bsky.social, @tomdelmont.bsky.social, Ulysse Guyet & Eugene Koonin. @pasteur.fr www.nature.com/articles/s41...
nature.com
Large eukaryotic DNA viruses encode ESCRT machinery for membrane remodelling - Nature Microbiology
A genomic screen reveals homologues of ESCRT components in mirusviruses that infect unicellular aquatic eukaryotes.
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Sebastian Baumgarten @sebbaumgarten.bsky.social · 19/08/2026
The singular job of all known ribosomes: synthesizing protein. Enter the malaria parasite. In our new work, we show that Plasmodium evolved an entire new kind that does just the opposite - inhibit mRNA translation. www.biorxiv.org/content/10.6...
biorxiv.org
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Tobias Warnecke @tobiaswarnecke.bsky.social · 22/08/2026
Who needs chromatin anyway...? NOT THIS GUY! www.biorxiv.org/content/10.6... 1/n
biorxiv.org
Chromatin is dispensable for bacterial life
Inside cells, DNA is intimately associated with proteins, forming chromatin. The protein constituents of chromatin vary across the tree of life: histones are the principal building blocks of chromatin...
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Julia Meltzer @juliameltzer.bsky.social · 13/08/2026
Excited to share what I've been working on with an incredible team! Visualisation of Asgard viruses on cell surfaces and vesicles, and a story of complex viral interactions. Preprint: www.biorxiv.org/content/10.6... @brendanburns999.bsky.social @belindaferrari.bsky.social @xabivc.bsky.social
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Marleen van Wolferen @marleenvw.bsky.social · 06/08/2026
With the 50th anniversary of #Archaea research coming up, read our latest review on one of its defining (and my favorite) model organisms: Sulfolobus acidocaldarius. #ArchaeaSky @archaellum.bsky.social, @sshamphavi.bsky.social, @michaelspaedt.bsky.social journals.asm.org/doi/10.1128/...
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Haaris Ahsan Safdari @haarissafdari.bsky.social · 03/06/2026
🚨 New in @natcomms.nature.com 🚨 Excited to share our paper on how proline-rich antimicrobial peptides interact with the bacterial ribosome. Using cryo-EM, we found that tiny sequence changes cause these peptides to "flip" orientation in the exit tunnel! 🔄🧫 Read: www.nature.com/articles/s41...
nature.com
Flipping antimicrobial peptides in the exit tunnel of the bacterial ribosome - Nature Communications
In this work authors show how minimal mutations in proline-rich antimicrobial peptides can flip their orientation in the ribosome exit tunnel, switching their mechanism from stalling translation termi...
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Ákos T Kovács @evolvedbiofilm.bsky.social · 23/05/2026
Spatial and genetic constraints govern transcription–translation coupling and mRNA degradation in bacteria -in @natmicrobiol.nature.com www.nature.com/articles/s41...
nature.com
Spatial and genetic constraints govern transcription–translation coupling and mRNA degradation in bacteria - Nature Microbiology
RNase E localization and translation initiation coordinate transcription, translation and mRNA degradation during the life cycle of an mRNA, explaining gene- and species-specific variations in this co...
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Malcolm White @mfwhite2.bsky.social · 22/05/2026
gotta love accelerated directed evolution
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Maria Barna @mbarnalab.bsky.social · 21/05/2026
’m thrilled to share that our paper is out in Molecular Cell! We developed Ribo-Tweezer, a new technology that lets us rapidly and reversibly remove specific proteins from mature ribosomes to ask what they actually do in translation.
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 21/05/2026
An RNA Language Model trained on sequence alone reveals the structural logic of Internal Ribosome Entry Sites www.biorxiv.org/content/10.6...
biorxiv.org
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Sonja-Verena Albers @archaellum.bsky.social · 20/05/2026
New preprint! Cell division has to happen at the right place but how Archaea pick that place is unknown. We now identified a three-protein system, Dip, that positions the divisome at midcell in H. volcanii and is broadly conserved across Archaea. A thread 🧵 www.biorxiv.org/content/10.6...
biorxiv.org
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Pierre van de Weghe @pvandeweghe.bsky.social · 21/05/2026
Et finalement pour diriger le @cnrs.fr, le PR propose de nommer Thierry Dauxois. Information via @aefsuprecherche.bsky.social #ESR
aefinfo.fr
CNRS : Emmanuel Macron propose de nommer Thierry Dauxois comme PDG
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Marvin Tanenbaum @marvintanenbaum.bsky.social · 13/05/2026
For 40 years the 8-nt ‘Kozak Sequence’ was thought to mark sites of translation initiation. In a new study, we revise this model by identifying an ~80-nt sequence—the extended Translation Initiation Sequence (eTIS)— that guides ribosomes to correct start sites. 🧵 www.biorxiv.org/content/10.6...
biorxiv.org
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
STCmicrobeblog @stcmicrobeblog.bsky.social · 13/05/2026
ribosomologists take note 👇 #MicroSky #RNASky
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Will Ratcliff @wcratcliff.bsky.social · 13/05/2026
1/23 New preprint! Been thinking about the origin of cellular life. Specifically, how protocells (or *any* compartments) just aren't enough to support the evolution of increasingly complex cells. You gotta de-Darwinize the parts! The ribosome/genome do this. www.biorxiv.org/content/10.6...
biorxiv.org
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Frances Yap @ribo1214.bsky.social · 13/05/2026
#Ribosome #RNASky Yield and fidelity of early steps of ribosome-free translation depend on the RNA anchoring. academic.oup.com/nar/article/...
academic.oup.com
Yield and fidelity of early steps of ribosome-free translation depend on the RNA anchoring
Abstract. Before the translational machinery came into being, a simpler form of reading RNA sequences to instruct peptide synthesis must have existed. What
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Archaea Power Hour @archaeapowerhour.bsky.social · 13/05/2026
Archaea Power Hour returns next WEDNESDAY, May 20th, at 10AM EST / 4PM CET for the final installment of our spring semester seminar series!! We have two exciting talks planned for you so check your email for the Zoom link (coming soon) or visit our website (link in bio) for more info on how to join.
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Ahmad Jomaa @jomaalab.bsky.social · 13/05/2026
Excited to share our work uncovering SNOR, a ribosome-associated factor that promotes translation restart after dormancy published in Nature!! This was, as usual, a wonderful collaborative effort between our group and the Mattei Lab @simonemattei.bsky.social @embl.org www.nature.com/articles/s41...
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Clément Madru @cryoclem.bsky.social · 05/05/2026
Happy to share our latest paper: www.nature.com/articles/s41... Great collaboration with @ifremer.bsky.social, @cbitoulouse.bsky.social & @pasteur.fr. Studying stress in P. abyssi with near-native, minimally purified ribosomes, we identified HibA, a new hibernation factor widespread in Archaea.
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
cryoEM papers @cryoempapers.bsky.social · 28/04/2026
A family of ribosome hibernation factors widespread in Archaea pubmed.ncbi.nlm.nih.gov/42045235/ #cryoEM
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
bioRxivpreprint @biorxivpreprint.bsky.social · 28/04/2026
Mechanism of nucleolytic degradation of human ribosomes www.biorxiv.org/content/10.64898/20…
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
MichaelMcMurray lab @mcmurraylab.bsky.social · 22/04/2026
Doing the periodic cleaning of used plasmid miniprep columns and realized in honor of Earth Day it may be worth reminding you molecular biologists: Plasmid miniprep columns can be cleaned and reused essentially indefinitely! Just add 1 M HCl, soak overnight and wash 3x w/ water. Save $ and plastic
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Filip Garbicz @filipgarbicz.bsky.social · 19/04/2026
Our new paper in Nature Communications is out (Nature Portfolio): How does a single mutation in a ribosomal protein drive blood cancer?
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Archaea Power Hour @archaeapowerhour.bsky.social · 17/04/2026
🚨 Archaea alert 🚨!! We’re back this Wednesday, April 22nd, at 10 AM EST / 4 PM CET with two exciting research talks! You won’t want to miss this so check your email for the Zoom link or visit the link in our bio for more info on how to join the community 🦠
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Debnath Ghosal @debnathghosal.bsky.social · 12/04/2026
One of biggest mysteries in biology: how did complex eukaryotic cells evolve from simple microbes? ~1.8 billion years ago, an archaeal cell likely merged with a bacterium to form the first eukaryotic cell, but can we ever find direct evidence of this transformative event? 🦠 🚶‍♂️
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Reposted by RNA & Ribosome Homeostasis Lab @École Polytechnique / @CNRS
Tobias Warnecke @tobiaswarnecke.bsky.social · 08/04/2026
I wrote an essay. It’s about gain-of-function mutations. And penguins. Also ion channels, chihuahuas, the film Alien, recycled cardboard, and the Apollonian mind. Oh, and muffins. Thanks to the editors of #GENETICS @genetics-gsa.bsky.social for letting me take some stylistic liberties. 1/2
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