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Mart Krupovic

@mkrupovic.bsky.social
2.7K followers 487 following 104 posts

Virus origins/diversity/evolution; mobilome; Archaea. Head of the Cell Biology and Virology of Archaea Unit at Institut Pasteur: research.pasteur.fr/en/team/archaea…

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Reposted by Mart Krupovic
Ana Gutiérrez-Preciado @anagtz.bsky.social · 04/10/2026
Where did eukaryogenesis likely happened? We studied a modern analog: microbial mats from a sulfidic, low O2, volcanic crater lake in the Afar region. Asgardarchaea thrive in the SO4-reduction zone along SO4-reducers :) @deemteam.bsky.social doi.org/10.1038/s415...
doi.org
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Diorge Souza @diorgeps.bsky.social · 02/10/2026
Finally out! Our work uncovers evolutionary links between bacterial and archaeal ribosome hibernation and eukaryotic energy sensing, through the archaeal hibernation factor AHA link.springer.com/article/10.1...
link.springer.com
A conserved archaeal protein with evolutionary links to bacterial ribosome hibernation and eukaryotic energy sensing - The EMBO Journal
Ribosome hibernation helps cells survive stress by reversibly silencing translation and preserving ribosomal complexes. Although well characterized in bacteria and eukaryotes, archaeal hibernation rem...
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Svetlana Dodonova @dodonova-sveta.bsky.social · 30/09/2026
New preprint from Dodonova lab 🔔! Capturing multiple states by cryo-EM❄️, we show for the first time how archaeal RNA Polymerase engages a nucleosome and forms direct contacts with histones! 🧬 Great work by Gabriele & a fantastic collaboration with Dina Grohmann! 🧵 www.biorxiv.org/content/10.6...
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Tanmay Bharat @tbharat-lab.bsky.social · 30/09/2026
Diverse S-layer anchoring mechanisms create an epiplasmic space in prokaryotic cell envelopes. Our review with @bupbuse.bsky.social and @vikramalva.bsky.social discussing a cellular compartment created by the S-layer out in Current Opinion in Microbiology. www.sciencedirect.com/science/arti...
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Vikram Alva @vikramalva.bsky.social · 30/09/2026
Our review on S-layer anchoring and the epiplasmic space is out in Current Opinion in Microbiology. authors.elsevier.com/sd/article/S...
authors.elsevier.com
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Vivek Mutalik @vivekmutalik.bsky.social · 29/09/2026
🎉 Scaling Phage-Bacteria Interaction Contexts: From Pairwise Mechanisms to Community Dynamics www.annualreviews.org/content/jour... #phagesky
annualreviews.org
Scaling Phage-Bacteria Interaction Contexts: From Pairwise Mechanisms to Community Dynamics
Bacteriophages (phages), viruses that parasitize bacteria, hold tremendous potential as antimicrobial agents, microbiome modulators, and industrial biocontrol tools; yet clinical and environmental app...
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Alexander Harms @aharms485.bsky.social · 25/09/2026
The final version of our manuscript on TnSeq in bacteriophages (“HIDEN-SEQ”) is out today – if you have an interesting phage phenotype and want to know the underlying genetic basis, this one is for you! 1/4
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Lauren Queiss @lqueiss.bsky.social · 24/09/2026
What happens when two viruses coinfect the same host? Check out the first publication of my PhD, where we describe two new viruses from an extremophilic system! www.nature.com/articles/s42...
nature.com
Two coinfecting archaeal viruses provide insights into virus-virus interactions - Communications Biology
Communications Biology - Two coinfecting archaeal viruses provide insights into virus-virus interactions
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Cedric Feschotte @cedricfeschotte.bsky.social · 24/09/2026
Thrilled to see this published today! Truly special because we made the initial discovery >15 yrs ago! We found two copies of a human gene called BC200 embedded in a human poxvirus. BC200 blurs the line between gene & transposon—both functional & mutagenic! www.science.org/doi/10.1126/... 🧵1/n
science.org
Escape of the BC200 gene to a human poxvirus reveals its persistent transposition in primates
Transposable elements mobilize within and occasionally between genomes, including from host to virus. We identified two insertions of the human BC200 noncoding RNA gene in the poxvirus molluscum conta...
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Anouk Willemsen @willemsenanouk.bsky.social · 24/09/2026
Why did some #viruses #evolve to be giants while others did not? ".. #giantViruses are typical viruses that evolved from smaller ones via accretion of genes recruited from the hosts." doi.org/10.1073/pnas... @mkrupovic.bsky.social & E. Koonin
doi.org
Why did some viruses evolve to be giants while others did not? | PNAS
Viruses are ubiquitous mobile genetic elements that are obligate symbionts of cellular life forms and replicate exclusively within host cells. The ...
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Maya Voichek @mayavoichek.bsky.social · 24/09/2026
Super excited to share my postdoctoral work at @imbavienna.bsky.social @viennabiocenter.bsky.social - We discovered that some retrotransposons, or "jumping genes" 🧬, are able to spread from cell to cell via a new viral infectivity route. A short thread: 🧵👇 (1/7)
AI-generated illustration of the soma-to-germline transmission of retrotransposons described in our work
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Mart Krupovic @mkrupovic.bsky.social · 23/09/2026
Congrats Simonetta et al! Very cool!
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Simonetta Gribaldo @sgribaldo.bsky.social · 23/09/2026
Interested in #archaea, #methane, #cell-envelopes? New paper out @nature.com ! We discovered an enzyme that specifically cleaves the cell wall of methanogens, revealing a new chemical structure of archaeal peptidoglycan, 50 yrs after its first description www.nature.com/articles/s41... #MicroSky 🧵👇
nature.com
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Doudna Lab @doudna-lab.bsky.social · 19/09/2026
Out now in Science: Two papers from our lab reveal VIPR, an RNA-guided DNA-targeting system in bacteriophages, providing clues to the origins of CRISPR www.science.org/doi/10.1126/... www.science.org/doi/10.1126/... Congrats to Peter Yoon, @kenjmloi.bsky.social @terryzzy.bsky.social, T.Docter & team
science.org
A noncontiguous code for RNA-guided DNA recognition at the origin of CRISPR-Cas
CRISPR-Cas provides RNA-mediated adaptive immunity, but how its first RNA-guided effector arose is unclear. In this study, we report the discovery of Viral Interference Programmable Repeat (VIPR) syst...
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Vivek Mutalik @vivekmutalik.bsky.social · 19/09/2026
Some of the smallest 😎 viruses on Earth are all around us. Three or four genes 😍 each, in nearly every environment. We keep finding thousands by sequencing, yet don't know who they infect, can't easily isolate them, or even how the few we have infect a cell. Our new preprint takes this on 🧵👇
Schematics of how single strand RNA and DNA phages infect bacteria with F-pilus
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Malcolm White @mfwhite2.bsky.social · 16/09/2026
Our paper on type II Panoptes is now published at PLOS Biology with new data on phage escapers - quite a step up in microbiology for our lab, led by Sabine Gruschow. Thanks to @erc.europa.eu for funding dx.plos.org/10.1371/jour...
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Cascales Lab @cascaleslab.bsky.social · 11/09/2026
New paper in Current Biology @currentbiology.bsky.social 🦠 Why do bacteria ditch their T6SS weapon? E. coli keeps it vs susceptible rivals, but loses it when facing immune ones. Great work by @bobytaillefer.bsky.social & Jonas Desjardins! www.cell.com/current-biol...
cell.com
Experimental evolution reveals genetic routes for adaptive loss of the antibacterial type VI secretion system
Taillefer et al. show that a bacterial type VI secretion system is lost or attenuated during experimental evolution when it provides no competitive advantage but is maintained in the presence of susce...
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Mart Krupovic @mkrupovic.bsky.social · 13/09/2026
Thanks, Ed!
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Ed Rybicki 🇿🇲🇿🇦🇬🇧🍷🚀 @edrybicki.bsky.social · 13/09/2026
Great paper, @mkrupovic.bsky.social et al.!! To be seen summarised in a Good Book near you in the next 2 years!
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Mart Krupovic @mkrupovic.bsky.social · 11/09/2026
Why did some #viruses evolve to be #giants while others did not? Our perspective piece on this topic with Eugene Koonin. www.pnas.org/doi/10.1073/...
pnas.org
Why did some viruses evolve to be giants while others did not? | PNAS
Viruses are ubiquitous mobile genetic elements that are obligate symbionts of cellular life forms and replicate exclusively within host cells. The ...
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Florian Mayer @florianmayer.bsky.social · 11/09/2026
Excited to share our preprint on Ignicoccus cell divison: only the inner membrane divides, progeny cells accumulate in cell clusters and pop-out! www.biorxiv.org/content/10.6... Great work with the labs: @buzzbaum.bsky.social @curiousdina.bsky.social @anja1.bsky.social @tbharat-lab.bsky.social
biorxiv.org
The life cycle of an archaeon with multiple membranes
Many prokaryotes are diderms. They divide using an FtsZ division ring to simultaneously constrict physically coupled inner and outer membranes to form daughter cells with two membranes. Currently, onl...
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Sara Otaegi Ugartemendia @saraotaegi.bsky.social · 08/09/2026
Thrilled to share my first first-author publication in PLOS Pathogens! 🎉 We structurally characterize a non-tailed vibriophage and describe an unusual symmetry mismatch! Work completed at @carmensmp.bsky.social lab at @cnb-csic.bsky.social Check it out! journals.plos.org/plospathogen... (1/5)
journals.plos.org
Structure of NO16, a marine non-tailed vibriophage with an unusual symmetry-mismatched vertex arrangement
Author summary Bacteriophages are among the most abundant biological entities in the oceans. While most known phages use a tail to recognize and infect bacteria, simpler non-tailed phages may be just ...
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François Rousset @francoisrousset.bsky.social · 08/09/2026
🚨 We are excited to share the first preprint of our lab ! We discovered an NADase enzymatic domain in bacterial immunity and in the human protein TEP1. www.biorxiv.org/content/10.6...
biorxiv.org
A widespread NADase domain links bacterial immunity with human TEP1
Recent discoveries on bacterial immunity have revealed that several protein domains involved in anti-phage defense are conserved in eukaryotes, such as SIRim, TIR, PNP and gasdermin. Bacterial immune ...
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DEEMteam_Orsay @deemteam.bsky.social · 04/09/2026
Databases may contain lots of misannotated 16S rRNA sequences, which can hinder accurate taxonomic assignment in metabarcoding and metagenomic analyses. We have addressed this issue for Asgard archaea and generated a curated set of high-quality 16S rRNA sequences: academic.oup.com/ismecommun/a...
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PLOS Biology @plosbiology.org · 03/09/2026
Identifying #antiphage defense systems can be challenging. This study by @duerkoplab.bsky.social describes a #bioinformatic pipeline that uses a small serine recombinase as a genetic marker to identify novel antiphage defense systems across diverse bacterial phyla. 🧪 #AcademicSky plos.io/4i4ZrUu
RADS leverages small serine recombinases associated with antiphage defense.
(A) Graphic depicting the locus that inspired RADS. EF_B0058 is a serine recombinase that is co-transcribed with EF_B0059, a Type IV restriction enzyme on the large conjugative plasmid pTEF2. (B) Graphic depicting the RADS bioinformatic pipeline.
(bottom) Alphafold3 modeling of KAP P-Loop NTPase domain (red) containing proteins with RUFs (green).
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Daniel Hurdiss @danielhurdiss.bsky.social · 03/09/2026
Structure and operating principles of a monkeypox virus replisome | @nature.com www.nature.com/articles/s41...
nature.com
Structure and operating principles of a monkeypox virus replisome - Nature
During replisome assembly of monkeypox virus, the hexameric helicase–primase E5 undergoes large-scale conformational changes that allow two of its primase domains to interact with the polymerase F8 th...
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Osterman Ilya @ostermanilya.bsky.social · 02/09/2026
Bacterial ribosomes can synthesize proteins encoded within their own RNA - WOW🔥 Very elegant and inspiring work from Shura Mankin's lab - Congratulations! www.nature.com/articles/s41...
nature.com
Rewiring the ribosome to translate proteins encoded in its own RNA - Nature
Bacterial ribosomes can synthesize proteins encoded within their own RNA.
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Patrick R. Secor @prsecor.bsky.social · 02/09/2026
This job ad is now live! Please share or apply here: jobs.montana.edu/postings/52780 Screening of applicants begins Sept 15, 2026 #MicroSky #PhageSky #ScienceJobs
jobs.montana.edu
Postdoctoral Researcher - Lyme Disease Bacteriophage Biology
The Secor Lab seeks a postdoctoral researcher to investigate bacteriophage biology in the Lyme disease spirochete Borrelia burgdorferi. The successful candidate will help define how phiBB-1 controls h...
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Thibaut Brunet @thibautbrunet.bsky.social · 02/09/2026
🚨 New preprint alert! 🚨 Choanoflagellates reorganize their global cytoskeletal architecture within seconds to explore confined microspaces. This is the main PhD work of the amazing @maitefreired.bsky.social www.biorxiv.org/content/10.6... A tread 🧵⬇️
biorxiv.org
Rapid repurposing of microvillar content drives a flagellate-to-amoeboid switch in the closest relative of animals
Animal cells extensively remodel their cytoskeleton during differentiation and can notably switch between two major motility modes: flagellum-based swimming and actin-based crawling. We previously sho...
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Sternberg Lab @sternberglab.bsky.social · 01/09/2026
Just published! IStrons are a unique class of transposable elements that pack three distinct functions in one nucleotide sequence. In this work, we used pooled library mutagenesis and high-throughput sequencing to systematically map the sequence and structural features that govern these functions.
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European Virus Bioinformatics Center @evbc.bsky.social · 06/07/2026
This comprehensive review synthesises current knowledge on the infection cycles of #Nucleocytoviricota (giant DNA viruses), highlighting shared mechanisms and lineage-specific innovations across diverse #virus families. 🦠🔬 📄 doi.org/10.1038/s41579-026-01319-6 👤 EVBC member: Mart Krupovic
doi.org
Infection cycles of viruses of the phylum Nucleocytoviricota - Nature Reviews Microbiology
In this Review, Abergel et al. overview infection cycles across the Nucleocytoviricota phylum, highlighting shared mechanisms and lineage-specific features spanning viral entry, viral factory formation, genome replication, virion morphogenesis and egress, and discuss key unresolved questions in the field.
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Leticia Botella @letibosa.bsky.social · 31/08/2026
The most interesting studies often begin with random observations, but it takes a great team to publish them. Thanks to @excellentia.bsky.social, all coauthors @phytophthorarc.bsky.social, and especially Kohei and Mart @mkrupovic.bsky.social, for this amazing joint journey! doi.org/10.1093/ve/v...
doi.org
A single-stranded DNA virus replicates in the mitochondria of a marine oomycete
Abstract. A virus with a circular single-stranded DNA genome, HthCRESSV1, was discovered in an oomycete, Halophytophthora thermoambigua, isolated from brac
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Evgenii Protasov @evgenii-protasov.bsky.social · 30/08/2026
Large eukaryotic DNA viruses encode ESCRT machinery for membrane remodelling #microbiology #viruses #DNA #eukaryotes #MicroSky @natmicrobiol.nature.com doi.org/10.1038/s415...
doi.org
Large eukaryotic DNA viruses encode ESCRT machinery for membrane remodelling - Nature Microbiology
A genomic screen reveals homologues of ESCRT components in mirusviruses that infect unicellular aquatic eukaryotes.
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Pedro Leão @pedroleao.bsky.social · 28/08/2026
The prokaryotic lipid divide: how strict is it? doi:10.1515/hsz-2026-0149 sciflow.eu?paper=958371
sciflow.eu
The prokaryotic lipid divide: how strict is it?
Biol Chem · 26 Aug 2026 — A long-lasting dogma regarding the membranes of prokaryotes is the distinct lipid composition of archaea and bacteria. Bacterial phospholipids consist of acyl chains that are...
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Evelien Adriaenssens @evelienadri.bsky.social · 27/08/2026
Dear eukaryotic, archaeal and bacterial virologists, I don't know how most of you feel about taxonomy, but it has an impact on all of our working lives. I am curious to hear from you about your opinion on subspecies classification based on this survey: www.microbiologyresearch.org/content/jour...
microbiologyresearch.org
Virus community views on the possible extension of virus taxonomic assignments to a below-species rank
The International Committee on Taxonomy of Viruses (ICTV) is considering a proposal submitted in July 2025 to create an optional additional taxonomic rank below the level of species. This was designed...
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Juan Martin Serrano @juanmartin-serrano.bsky.social · 26/08/2026
This is such a cool observation, some enveloped viruses encode their own ESCRTs. My fellow ESCRTologists, we are never going to get bored!
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Mart Krupovic @mkrupovic.bsky.social · 26/08/2026
SharedIt link: rdcu.be/fCbYd
rdcu.be
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Mart Krupovic @mkrupovic.bsky.social · 26/08/2026
Check out our paper on ESCRTs in large DNA viruses. Most enveloped viruses use the host #ESCRT for envelopment, but only mirusviruses and nucleocytoviricots encode it! Congrats @sonaida.bsky.social, @tomdelmont.bsky.social, Ulysse Guyet & Eugene Koonin. @pasteur.fr www.nature.com/articles/s41...
nature.com
Large eukaryotic DNA viruses encode ESCRT machinery for membrane remodelling - Nature Microbiology
A genomic screen reveals homologues of ESCRT components in mirusviruses that infect unicellular aquatic eukaryotes.
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Nature Microbiology @natmicrobiol.nature.com · 26/08/2026
Out Now! Large eukaryotic DNA viruses encode ESCRT machinery for membrane remodelling #MicroSky
go.nature.com
Large eukaryotic DNA viruses encode ESCRT machinery for membrane remodelling
Nature Microbiology, Published online: 26 August 2026; doi:10.1038/s41564-026-02470-9A genomic screen reveals homologues of ESCRT components in mirusviruses that infect unicellular aquatic eukaryotes.
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Lars-Anders Carlson @lacarlson.bsky.social · 26/08/2026
Two if my favourite topics in one paper: ESCRTs and viruses!
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Echard Lab @Institut Pasteur @echardlab-pasteur.bsky.social · 25/08/2026
Check our latest story about the control of cytokinetic abscission by Aurora B degradation! Congrats to Rayane and all coauthors! The proteasome promotes cytokinetic abscission by relieving an Aurora B-dependent inhibition of ESCRT-III dynamics: Current Biology www.cell.com/current-biol...
cell.com
The proteasome promotes cytokinetic abscission by relieving an Aurora B-dependent inhibition of ESCRT-III dynamics
Dibsy et al. show that proteasomal degradation of the Aurora B kinase is required for cytokinetic abscission in human cells. Aurora B degradation reduces the phosphorylation of its substrate, CHMP4C, ...
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Tanmay Bharat @tbharat-lab.bsky.social · 23/08/2026
Molecular architecture of colossal surface layers from hyperthermophilic archaea Led by @idocaspy.bsky.social (Ido) In collaboration with @mkrupovic.bsky.social and @vikramalva.bsky.social labs doi.org/10.64898/202...
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Tobias Warnecke @tobiaswarnecke.bsky.social · 22/08/2026
Who needs chromatin anyway...? NOT THIS GUY! www.biorxiv.org/content/10.6... 1/n
biorxiv.org
Chromatin is dispensable for bacterial life
Inside cells, DNA is intimately associated with proteins, forming chromatin. The protein constituents of chromatin vary across the tree of life: histones are the principal building blocks of chromatin...
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Franklin Nobrega @fnobrega.bsky.social · 15/08/2026
In a collaboration between the Patel, Aravind, and my group, we asked how far cyclic nucleotide signalling in bacterial antiviral immunity can diversify. Pycsar systems use cyclic pyrimidines. Can related systems also use cyclic purines?
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Malcolm White @mfwhite2.bsky.social · 11/08/2026
Tim Blower and I are guest editing a Biochemical Journal @biochemsoc.bsky.social themed collection on: The Prokaryotic Immune System It's now open for research submissions and we'd welcome submission of research and review articles. More info: portlandpress.com/biochemj/pag...
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Marleen van Wolferen @marleenvw.bsky.social · 06/08/2026
With the 50th anniversary of #Archaea research coming up, read our latest review on one of its defining (and my favorite) model organisms: Sulfolobus acidocaldarius. #ArchaeaSky @archaellum.bsky.social, @sshamphavi.bsky.social, @michaelspaedt.bsky.social journals.asm.org/doi/10.1128/...
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Evgenii Protasov @evgenii-protasov.bsky.social · 09/08/2026
Expansion of the Asgard archaeal virome and defensome provides insights into virus-host interactions #microbiology #archaea #virus #MicroSky @microbiomej.bsky.social link.springer.com/article/10.1...
link.springer.com
Expansion of the Asgard archaeal virome and defensome provides insights into virus-host interactions - Microbiome
Background Asgard archaea, broadly considered as a group of archaea that exhibit the closest evolutionary relationship with eukaryotes, encode diverse defense systems and are infected by distinct viru...
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Sofia Luengo-Woods @sluengo.bsky.social · 30/07/2026
We’re so excited to share our new paper, where we tackle the wealth of structural and functional diversity of anti-phage sensors across bacteria (1/6)
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Vivek Mutalik @vivekmutalik.bsky.social · 29/07/2026
🎉final print version in PLOS Genetics @sullivan-lab.bsky.social @biosci.lbl.gov journals.plos.org/plosgenetics...
journals.plos.org
Cross-family and phage-specific gene requirements for Klebsiella infection revealed by scalable RB-TnSeq genetic screens
Author summary Bacteriophages, or phages, are viruses that infect bacteria and play central roles in shaping microbial communities across ecosystems. Despite their ecological importance, the bacterial...
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Tobias Warnecke @tobiaswarnecke.bsky.social · 29/07/2026
Bacteriocins in archaea and archaeocins in bacteria. @romainstrock.bsky.social surveys the the exchange of molecular weaponry between archaea and bacteria. www.biorxiv.org/content/10.6...
biorxiv.org
Bacteriocins in archaea and archaeocins in bacteria
Archaea and bacteria routinely live side by side in microbial communities and must interact at least on occasion. Whether such cross-Domain interactions are dominated by mutual disregard, co-operation...
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