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Microbiome

@microbiomej.bsky.social
403 followers 527 following 237 posts

A family of open access journals that seek to unite investigators conducting microbiome research in environmental, agricultural, and biomedical arenas🦠

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Microbiome @microbiomej.bsky.social · 14h
In #Microbiome Longitudinal analysis of stowaway microorganisms aboard modules and cargo spacecraft of the Chinese Space Station🛰️ Read more ➡️ doi.org/rqj7
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Chris van der Gast @chrisvandergast.bsky.social · 28/09/2026
Great to see this finally out Impact of #trikafta/#kaftrio on respiratory microbiomes of adults with #cysticfibrosis from UK,US,& Canada Also shows negative selective impacts of azithromycin on #CF pathogens & #microbiome A need to reevaluate CF polypharmacy in the #CFTR modulator era?
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Microbiome @microbiomej.bsky.social · 29/09/2026
In #EnvironmentalMicrobiome From functional annotation to functional meaning in microbiome research🦠 Read more➡️ doi.org/rqj5 #Microbes
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Microbiome @microbiomej.bsky.social · 28/09/2026
In #Microbiome🦠 Remodelling of cystic fibrosis respiratory microbiota in response to extended elexacaftor–tezacaftor–ivacaftor therapy Read more➡️ doi.org/rqj6 #Microbes
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Microbiome @microbiomej.bsky.social · 24/09/2026
In #AnimalMicrobiome Host genetic architecture and gut microbiota cooperatively regulate early growth in goats🐐 Read more➡️ doi.org/rmkn #Microbes
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Microbiome @microbiomej.bsky.social · 23/09/2026
In #Microbiome Reconstructing community dynamics from limited observations🦠 Read more➡️ doi.org/rn9t #Microbes
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Microbiome @microbiomej.bsky.social · 22/09/2026
In #EnvironmentalMicrobiome Beyond diversity: the functional mechanisms of microbial adapations under climate change in alpine deserts🦠 Read more➡️ doi.org/rn9r #Microbes
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Microbiome @microbiomej.bsky.social · 21/09/2026
🚨Upcoming webinar this week: Don’t miss the talk by Marco Giovannetti, where he discusses research revealing that lettuce morphology plays a bigger role than genetics in determining leaf bacterial communities🦠 Sign up here➡️ cassyni.com/events/CRdy9... #Microbes #PlantBiology
cassyni.com
Cassyni | Research talks
Every paper has a story. Share it as a citable video publication.
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Microbiome @microbiomej.bsky.social · 21/09/2026
In #Microbiome Whole metagenome sequencing: not deep enough for complete microbial function recovery🦠 Read more➡️ doi.org/rn9s #Microbes
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Microbiome @microbiomej.bsky.social · 17/09/2026
In #AnimalMicrobiome From onset to healing: temporal dynamics of microbial communities pinpoint Midichloria-like organism’s key role in the development of the fish skin disease red mark syndrome🐟 Read more➡️ doi.org/hcgwpc
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Microbiome @microbiomej.bsky.social · 16/09/2026
🚨Only 1 week to go! Don’t miss the talk by Marco Giovannetti, where he discusses research revealing that lettuce morphology plays a bigger role than genetics in determining leaf bacterial communities🥬 cassyni.com/events/CRdy9... #Microbiome #PlantBiology
cassyni.com
Beyond Nutrients: How Plant Microbiomes May Shape the Future of Food
Lettuce leaves aren't just a salad ingredient — they're a habitat. This talk presents recent research showing that a lettuce plant's own form, more than its genetics, shapes the bacterial community li...
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Microbiome @microbiomej.bsky.social · 16/09/2026
In #Microbiome Integrated landscape of salivary metagenome and multi-biofluid metabolome characterizes a microbial-metabolic axis in upper gastrointestinal cancer progression🦠 Read more➡️ doi.org/rnwm #Microbes
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Microbiome @microbiomej.bsky.social · 15/09/2026
In #EnvironmentalMicrobiome Linking microbial community composition of three rootstock genotypes to apple replant disease susceptibility🍎 Read more➡️ doi.org/rnwh
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Microbiome @microbiomej.bsky.social · 14/09/2026
In #Microbiome Heat stress enhances gut microbial arginine catabolism to amplify MyD88-dependent inflammatory responses🦠 Read more➡️ doi.org/rnwj
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Microbiome @microbiomej.bsky.social · 10/09/2026
In #AnimalMicrobiome Host genetic architecture and gut microbiota cooperatively regulate early growth in goats🐐 Read more➡️ doi.org/rmkn
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Microbiome @microbiomej.bsky.social · 09/09/2026
In #Microbiome Deciphering microbial community dynamics using cross-sectional data-informed NeuralODE🦠 Read more ➡️ doi.org/rm9x #Microbes
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Microbiome @microbiomej.bsky.social · 08/09/2026
In #EnvironmentalMicrobiome A cooperative cobalamide biosynthesis guild in the endosphere of the edible aquatic plant Wolffia globosa Mankai🦠 Read more➡️ doi.org/rmkj
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Microbiome @microbiomej.bsky.social · 07/09/2026
In #Microbiome Baseline gut microbiome and metabolome profiles predict weight loss after a structured lifestyle intervention🦠 Read more ➡️ doi.org/rm9w
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Tyler J. Carrier @tylerjcarrier.bsky.social · 05/09/2026
New paper entitled “Phagocytosis of microbial symbionts supports embryonic nutrition in the sponge Halichondria panicea” is out now in @microbiomej.bsky.social! link.springer.com/article/10.1...
link.springer.com
Phagocytosis of microbial symbionts supports embryonic nutrition in the sponge Halichondria panicea - Microbiome
Background Animal development is frequently supported by microbial symbionts that contribute to host nutrition, metabolism, and physiology. While the functional importance of microbiomes in adult host...
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Microbiome @microbiomej.bsky.social · 03/09/2026
In #AnimalMicrobiome Metagenomic analysis reveals resistome characteristics and high-risk resistance genes in the pig nasal cavities, feces, and farm dust🐖 Read more➡️ doi.org/rmkm
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Microbiome @microbiomej.bsky.social · 02/09/2026
In #Microbiome Linking stochastic assembly to functional potential, redundancy, and trait patterns in bacterial communities🦠 Read more➡️ doi.org/rmkf #Microbes
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Anthony M. Bonacolta @ambonacolta.bsky.social · 31/08/2026
My final PhD chapter is now published in Microbiome (@microbiomej.bsky.social)! Using metabarcoding, photochemical measurements, and the first scRNAseq of a bleaching coral, we examined the microbial ecology of coral bleaching at the single-cell level! 🪸🔥 #CoralReefs 🔗 rdcu.be/zWHQ92WqZQUa
link.springer.com
Single-cell ecology of coral-algal symbiosis breakdown - Microbiome
Background The symbiosis between corals and dinoflagellate algae is disrupted by heat stress, leading to bleaching and subsequent coral mortality, devastating reef habitats. Despite its planetary-scal...
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Microbiome @microbiomej.bsky.social · 01/09/2026
In #EnvironmentalMicrobiome Season and soil properties structure bacterial communities in hyperacid (pH ≤ 2) fumarolic soils of the Tatun Volcanic Group🌋 Read more➡️ doi.org/rmkg #Microbes
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Microbiome @microbiomej.bsky.social · 01/09/2026
In #Microbiome Population-based characterisation of child and adolescent oral bacterial microbiomes🦠 Read more➡️ doi.org/rmkd #Microbes
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Ryan Cook @ryancook94.bsky.social · 27/08/2026
Happy to see the last parts of my PhD with @milja001.bsky.social now published in @microbiomej.bsky.social (many thanks to all involved!) link.springer.com/article/10.1...
link.springer.com
Distinct gut viral communities across life stages in dairy cattle - Microbiome
Background Ruminant gut microbial communities influence host health, productivity, and methane emissions, yet viral communities across life stages remain uncharacterized. Whilst bacteriophages shape m...
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Microbiome @microbiomej.bsky.social · 27/08/2026
In #AnimalMicrobiome The price of survival: comparative adaptation to high altitudes between yaks and cattle🦠 Read more➡️ doi.org/rjww #Microbes
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Microbiome @microbiomej.bsky.social · 26/08/2026
In #Microbiome 🚨mPower: a real data-based power analysis tool for microbiome study design Read more➡️ doi.org/rjwv #Microbes
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Microbiome @microbiomej.bsky.social · 25/08/2026
In #EnvironmentalMicrobiome From the leaf to the gut and back again: using synthetic bacterial communities to trace the fate and influence of phyllosphere bacteria in an Arabidopsis–Pieris brassicae system🦠 Read more➡️ doi.org/rjwx
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Microbiome @microbiomej.bsky.social · 24/08/2026
In #Microbiome Gut bacterial regulation of primate adaptive thermogenesis at high altitude🦠 Read more ➡️ doi.org/rjws
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Microbiome @microbiomej.bsky.social · 21/08/2026
What if the shape of a lettuce leaf mattered more than its DNA when it comes to the microbes living on it?🥬 Marco Giovannetti discusses the surprising role of lettuce morphology in shaping leaf bacterial communities in this upcoming Cassyni talk: cassyni.com/events/CRdy9... #Microbiome #Microbes
cassyni.com
Cassyni | Research talks
Every paper has a story. Share it as a citable video publication.
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Microbiome @microbiomej.bsky.social · 20/08/2026
In #AnimalMicrobiome Differential skin-bacteriome-mediated defense against chytridiomycosis in two neotropical frog species🐸 Read more➡️ doi.org/rjc9
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Tanner Richie @microberich.bsky.social · 18/08/2026
Final PhD chapter is PhDone!! ✨ Thrilled to see this out and a massive thank you to my incredible co-authors and mentor @sonnytmlee.bsky.social! Check it out below! #microbiome #microbialmetabolites #research #GutHealth #IBD
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Microbiome @microbiomej.bsky.social · 19/08/2026
In #Microbiome Comprehensive analyses of archaeal viral genomes reveal genomic characteristics, divergence, and host interactions🦠 Read more➡️ doi.org/rjwp #Microbes
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Microbiome @microbiomej.bsky.social · 18/08/2026
In #EnvironmentalMicrobiome Aeonium decorum as a microbial recruitment platform for atmospheric polycyclic aromatic hydrocarbons mitigation in urban gardens🪴 Read more➡️ doi.org/rjdb
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Microbiome @microbiomej.bsky.social · 17/08/2026
In #Microbiome Microbially derived glutathione from Eubacterium rectale alleviates oxidative stress and promotes intestinal epithelial recovery🦠 Read more➡️ doi.org/rjc8 #Microbes
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Microbiome @microbiomej.bsky.social · 13/08/2026
In #AnimalMicrobiome Temporal variations in the gut microbiota of François’ langur (Trachypithecus francoisi): implications for adaptation to seasonal dietary change and conservation🦠 Read more➡️ doi.org/rh27
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Microbiome @microbiomej.bsky.social · 12/08/2026
In #Microbiome Temporal dynamics of rhizosphere microbiome assembly and carbon-phosphorus coupling in poplar-medicinal plant intercropping systems🦠 Read more➡️ doi.org/rh25
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Microbiome @microbiomej.bsky.social · 11/08/2026
In #EnvironmentalMicrobiome Deep metagenomics uncovers functional adaptations and pathogenic risks in the gut microbiome of Antarctic fur seals (Arctocephalus gazella)🦠 Read more➡️ doi.org/rh28
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Microbiome @microbiomej.bsky.social · 10/08/2026
In #Microbiome Museomics reveals uncultured symbionts with biosynthetic potential in nudibranchs🦠 Read more➡️ doi.org/rh24
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Microbiome @microbiomej.bsky.social · 06/08/2026
In #AnimalMicrobiome The effects of parity on the maternal microbiome - challenges associated with mouse models🦠 Read more👉 doi.org/rhdj
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Microbiome @microbiomej.bsky.social · 05/08/2026
In #Microbiome The Metaproteomics Initiative: five years of community-driven progress Read more 👉 doi.org/rhdg
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Microbiome @microbiomej.bsky.social · 04/08/2026
In #EnvironmentalMicrobiome Enhancing the understanding of environmental microbiomes through topic modeling: a quantitative and qualitative analysis🦠 Read more👉 doi.org/rgft
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Microbiome @microbiomej.bsky.social · 03/08/2026
In #Microbiome The need for standardization and improved open (meta)data practices in metaproteomics🦠 Read more👉 doi.org/rhdh
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Microbiome @microbiomej.bsky.social · 31/07/2026
In #AnimalMicrobiome The bovine ocular microbiome: a multi-approach study of composition and antimicrobial activity🦠 Read more➡️ doi.org/rgfs #Microbes
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Microbiome @microbiomej.bsky.social · 31/07/2026
In #Microbiome Yeast culture promotes butyrate produced fibrolytic bacteria as intracellular hydrogen sink in the rumen🚨 Read more➡️ doi.org/rgjw
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Microbiome @microbiomej.bsky.social · 28/07/2026
In #EnvironmentalMicrobiome Enhancing the understanding of environmental microbiomes through topic modeling: a quantitative and qualitative analysis🦠 Read more➡️ doi.org/rgft #Microbes
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Microbiome @microbiomej.bsky.social · 27/07/2026
In #Microbiome SubCom analysis: dissecting microbial community functions into taxon-specific contributions and interaction contexts🔬 Read more➡️ doi.org/rgfr
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Microbiome @microbiomej.bsky.social · 23/07/2026
In #AnimalMicrobiome Using sequence-derived microbiome information from bulk tank milk samples to assess the influence of post-milking teat disinfection in New Zealand dairy herds🐄 Read more👉 doi.org/rfqf #Microbes
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Microbiome @microbiomej.bsky.social · 22/07/2026
In #Microbiome Neighborhood deadwood and yard rewilding modulate commensal microbiomes and inflammatory signals among urbanites🦠 Read more 👉 doi.org/rfzt
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Microbiome @microbiomej.bsky.social · 21/07/2026
In #EnvironmentalMicrobiome Predicting the seed microbiome using phylogeny-driven machine learning🦠 Read more👉 doi.org/rfqg #Microbes
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