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KJ

@kjgoh.bsky.social
59 followers 90 following 16 posts

PhD | Biology enthusiast | RF in @LithgowLab at Monash | Video games addict |🏸🏀 lover |

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Reposted by KJ
Trevor Lithgow @trevor-lithgow.bsky.social · 12/04/2026
Thanks to Marvin Whiteley and the @asm.org @mbio.bsky.social for a good time on their podcast talking about a bacteriophage that flexes and contracts in impossible ways. Also detailed in an mBio paper here DOI: 10.1128/mbio.03829-25 @macsys.bsky.social youtu.be/eDGta8xc4_0?...
youtu.be
Phage JS1: The Virus Breaking the Rules - Editors in Conversation, mBio Edition
YouTube video by American Society for Microbiology
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KJ @kjgoh.bsky.social · 25/03/2026
5 tanks are running concurrently! ⚡⚡⚡ @christhemicrobe.bsky.social
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Freya Harrison @friendlymicrobe.bsky.social · 05/03/2026
If you check out my lab's recent work, you'll notice how much biofilm structure is destroyed by dehydration & vacuum during standard scanning electron microscopy. These are both images of P. aeruginosa PA14 #biofilm on pig lung tissue at 48h p.i: using cryoSEM retains the biofilm matrix. #MicroSky
In the standard SEM image, aggregates of bacterial cells with no visible matrix sit on top of a network of collagen fibrils. In the cryo image, interconnected aggregates are covered with a smooth coat of matrix, and no collagen is visible - it is under the aggregates, and the only tissue structures visible are patches of elastin fibres.
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Shu-Sin Chng @figlegend.bsky.social · 03/03/2026
Zhi-Soon and Jacob also found that the AsmA sf protein YhdP interacts stably/specifically with DedD, which binds cell wall primarily at the division site. We offer some prelim thoughts for why/when this interaction might occur, despite seemingly distinct localization patterns. Lots to think abt! 3/3
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Jessica Andreani @jessicaandreani.bsky.social · 28/11/2025
New paper alert 🚨 I am super happy about it, for many reasons! 👥 It was a great collaborative project with Calum @chgjohnston.bsky.social and J. Pablo Radicella, designed a long time ago (in the pre-AlphaFold era - can you imagine?) together with @polardlab.bsky.social and @raphguerois.bsky.social
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Frances Separovic @francesbiophys.bsky.social · 23/11/2025
Congratulations to Prof. Adelle Coster, UNSW, to whom I was honoured to present the 2025 Australian Society for Biophysics (ASB) Bob Roberston medal during ASB2025 at @griffith.edu.au. Adelle is pictured with ASB President, @lisannes.bsky.social; inaugural awardee Hans Coster; & myself 2009 medal.
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George Wood @gwoodrna.bsky.social · 06/11/2025
Our new paper is out in @natcomms.nature.com! We uncover how the Salmonella SPI-1 injectisome reshapes macrophage translation, resulting in a sustained decrease in inflammatory gene expression. Grateful to all my co-authors and collaborators for an incredible team effort!
nature.com
The Salmonella pathogenicity island 1 injectisome reprograms host cell translation to evade the inflammatory response - Nature Communications
In this work, authors show that Salmonella uses its SPI-1 injectisome to infect macrophages, triggering rapid translational upregulation of transcription factors, such as EGR1 which suppresses the inf...
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Nature @nature.com · 07/11/2025
Scientists feel that the pressure to publish is rising, but that the time and resources they have to do the necessary research are falling, according to a survey of 3,200 researchers go.nature.com/4hNDvuN
go.nature.com
Pressure to publish is rising as research time shrinks, finds survey of scientists
Researchers feel that pressures to publish are increasing, but the time and resources available to do research are decreasing, according to a survey by Elsevier.
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Alex Ludwig @alexludwig.bsky.social · 08/11/2025
An Archaea bacterium with an internal membrane system! Amazing and beautiful work!
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STCmicrobeblog @stcmicrobeblog.bsky.social · 13/10/2025
great idea to collaborate with courtney ellison for "...fancy microscopy to capture pilus dynamics!" 👏
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Lorne Proteins @lorneproteins.bsky.social · 25/09/2025
📢 𝙰𝚋𝚜𝚝𝚛𝚊𝚌𝚝 𝚂𝚞𝚋𝚖𝚒𝚜𝚜𝚒𝚘𝚗𝚜 𝙲𝚕𝚘𝚜𝚒𝚗𝚐 𝚂𝚘𝚘𝚗!! 𝙳𝚘𝚗’𝚝 𝚖𝚒𝚜𝚜 𝚢𝚘𝚞𝚛 𝚌𝚑𝚊𝚗𝚌𝚎 𝚝𝚘 𝚜𝚑𝚊𝚛𝚎 𝚢𝚘𝚞𝚛 𝚛𝚎𝚜𝚎𝚊𝚛𝚌𝚑 𝚊𝚝 𝚝𝚑𝚎 𝙻𝚘𝚛𝚗𝚎 𝙿𝚛𝚘𝚝𝚎𝚒𝚗 𝙲𝚘𝚗𝚏𝚎𝚛𝚎𝚗𝚌𝚎 𝟸𝟶𝟸𝟼. 𝙰𝚋𝚜𝚝𝚛𝚊𝚌𝚝 𝚜𝚞𝚋𝚖𝚒𝚜𝚜𝚒𝚘𝚗𝚜 𝚌𝚕𝚘𝚜𝚎 𝟸𝟺𝚝𝚑 𝙾𝚌𝚝𝚘𝚋𝚎𝚛 – 𝚜𝚑𝚘𝚠𝚌𝚊𝚜𝚎 𝚢𝚘𝚞𝚛 𝚠𝚘𝚛𝚔 𝚝𝚘 𝚝𝚑𝚎 𝚐𝚕𝚘𝚋𝚊𝚕 𝚙𝚛𝚘𝚝𝚎𝚒𝚗 𝚜𝚌𝚒𝚎𝚗𝚌𝚎 𝚌𝚘𝚖𝚖𝚞𝚗𝚒𝚝𝚢 𝚒𝚗 𝚐𝚕𝚘𝚛𝚒𝚘𝚞𝚜 𝙻𝚘𝚛𝚗𝚎! 🏖️ 🏄‍♀️ 🏊 👉 𝚂𝚞𝚋𝚖𝚒𝚝: www.lorneproteins.org/submissions
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eLife @elife.bsky.social · 01/10/2025
Cryogenic electron microscopy has been used to determine the detailed structure of an intermediate state called a “D-loop” that forms when strands of DNA are exchanged during homologous recombination. buff.ly/pZZfIso
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Augustinas Silale @augustsilale.bsky.social · 02/10/2025
Our paper on the Bacteroidota BAM complex is out in @natmicrobiol.nature.com! With @madejmar.bsky.social We found that BAM in Bacteroides and Porphyromonas gingivalis has a distinct architecture from BAM in Proteobacteria. doi.org/10.1038/s415...
doi.org
Structure of a distinct β-barrel assembly machinery complex in the Bacteroidota - Nature Microbiology
Structural and functional characterization of the β-barrel assembly machinery complex in Bacteroidota reveals a distinct, seven-component complex with a large extracellular domain that may enable β-barrel–surface lipoprotein complex assembly.
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Kexin Zhang @kekexinz.bsky.social · 17/09/2025
🚀 Check out our new preprint on extending the scope of single-particle cryo-EM with 2D template matching! Improved cryo-EM reconstruction of sub-50 kDa complexes using 2D template matching is now available on bioRxiv! www.biorxiv.org/content/10.1...
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Herve Celia @hervecelia.bsky.social · 04/09/2025
www.sciencedirect.com/science/arti...
sciencedirect.com
Characterization of the OMP biogenesis machinery in Fusobacterium nucleatum
F. nucleatum is a Gram-negative bacteria that causes oral infections and is linked to colorectal cancer. Pathogenicity relies on a type of β-barrel ou…
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Herve Celia @hervecelia.bsky.social · 04/09/2025
www.sciencedirect.com/science/arti...
sciencedirect.com
Structural insights into outer membrane protein biogenesis in pathogenic Neisseria
N. gonorrhoeae (Ngo) causes the sexually transmitted infection gonorrhea with ∼106 million infections worldwide annually. Ngo infections can result in…
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The EMBO Journal @embojournal.org · 04/09/2025
Bacterial cell widening alters periplasmic size and activates envelope stress responses Kerwyn Huang, @typaslab.bsky.social et al find that E. coli outer-membrane protein RcsF senses reduced periplasm thickness due to increased cell width, & activates Rcs signaling www.embopress.org/doi/full/10....
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MACSYS @macsys.bsky.social · 19/05/2025
🚨 Exciting PhD Opportunities with MACSYS! The MACSYS team at Monash University is offering multiple fully funded #PhD scholarships for students eager to explore the cutting edge of computational biology, microbiology, & systems modelling. 👉More info/apply: macsys.org/monash-phd-s...
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Martin Smith @martinalexsmith.bsky.social · 25/08/2025
RNA is far more than a messenger. Its structures regulate, evolve, and catalyze — carrying out functions DNA alone cannot. But predicting #RNA structure from sequence is still extremely difficult. In our recently published paper in @narjournal.bsky.social we present a way forward. 🧵 ⤵️
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Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 23/08/2025
Aggresomes protect mRNA under stress in Escherichia coli www.nature.com/articles/s41... "prolonged stress leading to ATP depletion in Escherichia coli results in increased aggresome formation, compaction and selective mRNA enrichment within these aggresomes" 🦠 #microsky #rnasky
nature.com
Aggresomes protect mRNA under stress in Escherichia coli - Nature Microbiology
Ribonucleoprotein aggresomes exclude ribonucleases and protect mRNA to promote rapid translation reactivation and cellular recovery after stress alleviation in Escherichia coli.
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Nature Microbiology @natmicrobiol.nature.com · 21/08/2025
#News&Views Bacterial prions form amyloids in response to phage infection and induce cell death to prevent viral replication, similar to the processes in fungi and across the tree of life. #MicroSky www.nature.com/articles/s41...
nature.com
Amyloids in bacterial antiphage defence - Nature Microbiology
Bacterial prions form amyloids in response to phage infection and induce cell death to prevent viral replication, similar to the processes in fungi and across the tree of life.
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Laura White @laurakwhite.bsky.social · 22/08/2025
Our paper is out in its final form! Back in April 2023, my coauthor Aleks Radakovic, then a PhD student, approached me after a talk in Chicago to ask what I thought an aminoacylated tRNA would look like if we pulled it through a @nanopore. doi.org/10.1038/s414...
doi.org
Nanopore sequencing of intact aminoacylated tRNAs - Nature Communications
Accurate protein synthesis depends on aminoacylated tRNAs, but their identities have been hard to measure. Here, authors present aa-tRNA-seq, a nanopore-based method that reveals the amino acid, seque...
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ᐯIᑕTOᖇ ᑎIᘔET, ᗰᗪ @nizet.bsky.social · 14/08/2025
one small consolation of being a 60+ year old investigator is the ability to submit to 𝘔𝘈𝘛𝘜𝘙𝘌 family journals — sure they’re low impact (for our knees) but they have an early bird special if you submit between 4:00 and 5:30 on weekdays
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MACSYS @macsys.bsky.social · 12/08/2025
Meet the minds in MACSYS shaping the future with our series of profiles featuring our Postdoctoral Research Fellows. Dr TrungTin Nguyen is with MACSYS at QUT. His research investigates the mathematical & statistical foundations of #AI: www.linkedin.com/pulse/dr-tru... @trungtinnguyen.bsky.social
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Debnath Ghosal @debnathghosal.bsky.social · 02/08/2025
In this system, bacteria detect phage infection through a sensor protein (YjbH) and respond by severing the infected part of the cell via aberrant division. The rest of the cell survives and continues growing happily, essentially, bacterial autotomy!
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Michael Deghelt @michaeldeghelt.bsky.social · 29/07/2025
#microsky We challenge the long-standing view that peptidoglycan alone protects cells from bursting. Our study shows that the periplasm — enclosed by OM–PG connections — acts as a pressure buffer essential for osmoprotection in Gram-negative bacteria. 📄 www.nature.com/articles/s41...
nature.com
Peptidoglycan–outer membrane attachment generates periplasmic pressure to prevent lysis in Gram-negative bacteria - Nature Microbiology
Outer membrane attachment to peptidoglycan enables periplasmic pressure to build up and counter cytoplasmic turgor pressure, preventing lysis during osmotic challenges in Escherichia coli.
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Nature Cell Biology @natcellbio.nature.com · 29/07/2025
🍹Sharma, Jiao et al. report glycosylation of small RNAs within #exosomes and propose a glycosylation-dependent mechanism for #RNA targeting into exosomes, which may influence intercellular communication and RNA stability in the extracellular environment. 👉https://rdcu.be/eykKY bit.ly/455vyuP
bit.ly
Extracellular exosomal RNAs are glyco-modified - Nature Cell Biology
Sharma, Jiao and colleagues report glycosylation of small RNAs within exosomes and propose a glycosylation-dependent mechanism for RNA targeting into exosomes, which may influence intercellular commun...
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Trevor Lithgow @trevor-lithgow.bsky.social · 17/07/2025
We have been working on ways to find #phage with long shelf-life and this one is a winner. 12 months freeze-thawing as much as you like, no loss of viability #phageSky #microSky rdcu.be/ewnzT
rdcu.be
Highly stable bacteriophages PIN1 and PIN2 have hallmarks of flagellotropic phages but infect immotile bacteria
npj Viruses - Bacteriophages (phages) are viruses that kill bacteria, with potential as antibacterial agents in industrial settings, agriculture, and human health. Here, we identified two phages,...
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Nucleic Acids Research @narjournal.bsky.social · 14/07/2025
📣NAR Breakthrough Article!📣 ✂️ Removal of a single tRNA^Gly gene copy in Staphylococcus aureus via CRISPR weakens the cell wall, biofilm formation and increases antibiotic susceptibility💊 📖 doi.org/10.1093/nar/... #Microbiology #CRISPR #tRNA #AntibioticResearch #BacterialGenetics
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Matt Doyle @doylemt1.bsky.social · 06/07/2025
Check out these amazing lipid-monolayer-trapping oligomeric OMPs published by @lalouxlab.bsky.social and Lovering Labs. The BAM complex in these bugs must be wild! www.nature.com/articles/s41...
nature.com
A porin-like protein used by bacterial predators defines a wider lipid-trapping superfamily - Nature Communications
This study reveals that an outer membrane protein from the predator Bdellovibrio bacteriovorus forms a pentameric assembly that traps a lipid monolayer within. This allows the discovery of two superfa...
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Chelsea Brown @chelseabrown.bsky.social · 01/07/2025
What better way to use my first proper post than to share my first big piece of post-doctoral work with @cg-martini.bsky.social! Here, we used integrative modelling to build and simulate a mitochondrial cristae. Find the paper here (rdcu.be/eujAC) or see below for a quick overview 👇
A stylized image of the molecular model of a mitochondrial crista, with proteins and lipids shown
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Laura Mike @lauraamike.bsky.social · 03/07/2025
It's seem like arginine is emerging as a major host cue. So we wrote an IAI minireview on how arginine levels vary between host tissues and affect microbial behavior. The review is online today! journals.asm.org/doi/epdf/10.... @brookeeryan3.bsky.social #microsky
Known effects of arginine on Gram-positive and Gram-negative behavior
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Laura Mike @lauraamike.bsky.social · 01/07/2025
Our paper reporting a highly conserved mechanism by which arginine positively regulates hypervirulent K. pneumoniae mucoid phenotype is now fully online. rdcu.be/euiWG Summary picture is below, but details in the 🧵
Overview of paper revealing role of arginine in regulating K. pneumoniae mucoidy.
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Herve Celia @hervecelia.bsky.social · 01/07/2025
After an unexpectedly long editorial process, our paper describing the structures of the E coli TolAQR and TonB-ExbBD complexes is finally out. The coordinates are to be released on July 9th on the PDB. www.nature.com/articles/s41...
nature.com
Cryo-EM structures of the E. coli Ton and Tol motor complexes - Nature Communications
The Ton and Tol systems are bacterial energy-transducing complexes that use the proton motive force at the inner membrane to exert force on outer membrane proteins. Here the authors present the high-r...
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Bergeron lab @bergeronlab.bsky.social · 01/07/2025
The peer-reviewed version of our article on the flagellum filament assembly is out! A masterpiece from duo extraordinaire Kailin and Rosa, and an incredibly productive collaboration with Marc Erhardt and Morgan Beeby.
nature.com
The structure of the complete extracellular bacterial flagellum reveals the mechanism of flagellin incorporation - Nature Microbiology
Cryo-electron microscopy analysis of the extracellular flagellum structure, including the hook–filament junction and filament cap complex, reveals mechanisms of flagellin incorporation into the growin...
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SMB - Society for Mathematical Biology @smbmathbiology.bsky.social · 17/06/2025
Here is a new paper by C. Peterson, D. Gandhi, A. Carlson, A. Lubkemann, E. Richardson, J. Serralta, M.S. Allen, S. Roy, C.M. Kribs & H.V. Kojouharov on A SIMPL Model of Phage-Bacteria Interactions Accounting for Mutation and Competition. link.springer.com/article/10.1... 🧪
link.springer.com
A SIMPL Model of Phage-Bacteria Interactions Accounting for Mutation and Competition - Bulletin of Mathematical Biology
Pseudomonas aeruginosa is an opportunistically pathogenic bacteria that causes fatal infections and outbreaks in hospital environments. Due to the increasing prevalence of antibiotic-resistant strains...
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 20/06/2025
Molecular interplay between peptidoglycan integrity and outer membrane asymmetry in maintaining cell envelope homeostasis www.biorxiv.org/content/10.1101/202…
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Kedrov Lab @ HHU @kedrov-lab.bsky.social · 15/06/2025
It is online since a few days, so time to recap: Our first steps in a new field of bacterial polysaccharide secretion, focused on Pel system from Pseudomonas aeruginosa: www.nature.com/articles/s41...
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Shu-Sin Chng @figlegend.bsky.social · 17/06/2025
Super excited to share our latest work revealing impt of protein-lipid interactions for the pri fn of the Tol-Pal complex in maintaining outer memb lipid homeostasis in E. coli! Huge discovery by Nadege Lim in collab @pstansfeld.bsky.social @robincorey.bsky.social 1/7 www.biorxiv.org/content/10.1...
biorxiv.org
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Shu-Sin Chng @figlegend.bsky.social · 13/06/2025
@weeboont.bsky.social talked about our lab's recent preprint where we report AsmA superfamily proteins, believed to be phospholipid transporters, localizing to cell poles in E. coli. Really interesting observations, with impt implications for OM assembly! Read it 👇! www.biorxiv.org/content/10.1...
biorxiv.org
Polar localization of putative phospholipid transporters in Escherichia coli
The Gram-negative bacterial cell envelope comprises an outer membrane (OM) with an asymmetric arrangement of lipopolysaccharides (LPS) and phospholipids (PLs), protecting them from both physical and c...
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Trevor Lithgow @trevor-lithgow.bsky.social · 13/06/2025
www.linkedin.com/posts/macsys... Please follow us, and join us if you want to get into building comprehensive whole cell models
linkedin.com
Day 2 at the MACSYS workshop at Monash University - it's all about connection and coordination. | MACSYS - ARC Centre of Excellence for the Mathematical Analysis of Cellular Systems
Day 2 at the MACSYS workshop at Monash University - it's all about connection and coordination. After deep dives into research challenges on day 1, today was focused on aligning our efforts: who’...
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Trevor Lithgow @trevor-lithgow.bsky.social · 13/06/2025
www.linkedin.com/posts/macsys...
linkedin.com
There’s nothing quite like coming together in person! | MACSYS - ARC Centre of Excellence for the Mathematical Analysis of Cellular Systems
There’s nothing quite like coming together in person! Researchers from across the MACSYS nodes gathered at Monash University for the first of two intensive workshop days. Through individual, small-gro...
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KJ @kjgoh.bsky.social · 08/06/2025
Learning starts today 😂 #puffingbilly #souvenir #aussieslang #melbourne #goodbook
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Yves Brun lab @brunlabcaulo.bsky.social · 02/06/2025
How does your favorite species elongate? 🧵 "Phenotypic plasticity in bacterial elongation among closely related species". Happy to see this paper in print @natcomms.nature.com. Nice work by @mariedelaby.bsky.social, Liu Yang et al. See original 🧵, different colours, same data and conclusions.
nature.com
Phenotypic plasticity in cell elongation among closely related bacterial species
Nature Communications - Multiple types of cell elongation have been described in bacteria, but little is known about how these strategies vary across species. Here, the authors use fluorescent...
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Zheng Shi @zs-biophys.bsky.social · 29/05/2025
We are looking for a postdoc to study biomolecular condensates and/or mechanosensitive membrane proteins. Please help spread the news 🙏 sites.rutgers.edu/shi-lab/look...
sites.rutgers.edu
Looking for a postdoc - Shi Lab
The Shi lab at Rutgers-New Brunswick is seeking a postdoctoral researcher to study biomolecular condensates and/or mechanosensitive membrane proteins. To see more information and apply, please go to t...
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Nature Communications @natcomms.nature.com · 30/05/2025
Bacterial genomes still contain many hidden genes. This article reports a high-resolution map of translated proteins, incl. small ones, in the pathogen Campylobacter jejuni @uniwuerzburg.bsky.social @campy-bara.bsky.social @sharmalab.bsky.social
bit.ly
Complementary Ribo-seq approaches map the translatome and provide a small protein census in the foodborne pathogen Campylobacter jejuni - Nature Communications
Bacterial genomes still contain many hidden and uncharacterized genes. Using complementary Ribo-seq approaches, Froschauer, Svensson et al. here annotate start and stop codons of Campylobacter jejuni, reporting a high-resolution translatome and identifying several novel small ORFs in this foodborne pathogen.
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Nature @nature.com · 30/05/2025
The further a researcher or inventor moves from their previous work, the less cited their latest work will be go.nature.com/44VjEW9
go.nature.com
Shifting research focus comes with the risk of reduced impact
An analysis of millions of scientific papers and patents shows that the further a researcher or inventor moves from their previous work, the less cited their latest work will be.
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Nature Communications @natcomms.nature.com · 30/05/2025
The nucleoid of rapidly growing E. coli 🦠 localizes close to the inner membrane & is organized by transcription, translation, & cell geometry @michriscopy.bsky.social @uni-wuerzburg.de @heilemannlab.bsky.social @goetheuni.bsky.social #microbiology
bit.ly
The nucleoid of rapidly growing Escherichia coli localizes close to the inner membrane and is organized by transcription, translation, and cell geometry - Nature Communications
The mechanisms underlying bacterial chromosome configuration are not fully understood. Here, Spahn et al. show that the Escherichia coli nucleoid adopts a condensed, membrane-proximal configuration during rapid growth, with transcription and translation acting as main drivers of nucleoid organization.
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MACSYS @macsys.bsky.social · 29/05/2025
The MACSYS team was well represented at this year's InSTEM Conference in Melbourne. The InSTEM Conference brings together leaders, allies, and members of marginalised groups with a goal to foster inclusive environments, share effective diversity strategies, and strengthen allyship.
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Trevor Lithgow @trevor-lithgow.bsky.social · 25/05/2025
Great science looks at big unknowns. In bacteria, sRNAs control gene expression but ‘how’ they do this at systems level is far from known. @MACSYS is recruiting for courageous PhD students who would learn, know and report how sRNAs deliver systems level phenotypes macsys.org/monash-phd-s... for
macsys.org
PhD Scholarships at Monash University - MACSYS
Do cutting-edge research at the frontiers of Whole Cell Modelling! The MACSYS Node at Monash University has multiple PhD Scholarships available to work on some exciting projects! $41,753 p.a. stipend ...
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