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Joe Zackular

@joeyzacks.bsky.social
3.7K followers 976 following 210 posts

Associate Prof at UPenn & Children’s Hospital of Philadelphia Co-Director of Center for Microbial Medicine (tinyurl.com/2xve6jfp) at CHOP We study host-pathogen interactions, C. diff, Enterococcus, gut microbiota, mRNA vaccines. zackularlab.org

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Reposted by Joe Zackular
Vaughn Cooper @vscooper.micropopbio.org · 27/09/2026
How do Burkholderia multivorans bacteria adaptively evolve during infections of the cystic fibrosis airway? A longtime collab and intensive study of 8 patients links bacterial adaptations to disease progression. Our findings also unite prior studies. www.biorxiv.org/content/10.6...
biorxiv.org
Convergent genetic evolution within Burkholderia multivorans chronic infections correlates with lung function decline in cystic fibrosis patients
The patterns and pathways of pathogen adaptation during chronic infections can reveal the gateways microbes must unlock to colonize and persist. In chronic lung infections of cystic fibrosis (CF) pati...
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Immunology Podcast @immunologypodcast.com · 23/09/2026
Researchers with Alexa Semon at @childrensphila.bsky.social found that early-life C. difficile exposure alters intestinal #StemCell behavior and leaves lasting changes in gut development. 🧫 Read more: bit.ly/4rhvTW2 🎧 Tune in: bit.ly/3VE92Ik
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Contagion® @contagionlive.bsky.social · 25/09/2026
Listen to our conversation with Joseph Zackular, PhD, who provides insights around his work including how the colonization reshapes gut development, as well as some potential intervention strategies to shield neonates. #IDsky #Medsky www.contagionlive.com/view/asympto...
contagionlive.com
Asymptomatic C difficile Colonization in Infants Doesn’t Mean Benign | Contagion Live
A new study in infants challenges the long-standing belief about the pathogen’s effects in the youngest pediatric population. Senior author Joseph Zackular, PhD, provides insights around his work incl...
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Vaughn Cooper @vscooper.micropopbio.org · 25/09/2026
FYI to everyone submitting this October NIH cycle You need to re-certify your ScienCV AFTER Sept 26 (tomorrow) for your application or it may not be accepted. Great timing!
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Harmit Singh Malik @harmitmalik.bsky.social · 25/09/2026
Tenure process in the age of Trump and Vought
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Nature Reviews Microbiology @natrevmicro.nature.com · 23/09/2026
ICYMI: New online! Clostridioides difficile rewires the infant gut
dlvr.it
Clostridioides difficile rewires the infant gut
Nature Reviews Microbiology, Published online: 16 September 2026; doi:10.1038/s41579-026-01375-yIn this study, Semon and colleagues examine the role of Clostridioides difficile colonization in early life and its lasting effects on host development.
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Louise H. Moncla @lhmoncla.bsky.social · 23/09/2026
Our lab just put out a new preprint! Led by Maria Maltepes, we've been working with @tavisanderson.bsky.social and @alexey-markin.bsky.social to understand how host species impacts the fundamentals of how influenza viruses evolve. TLDR, reassortment and selection rates vary widely across species.
scholar.google.com
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Mark Mandel @markjmandel.bsky.social · 23/09/2026
Check out the first paper from Maggie Alexander's Lab at @uwmadisonmmi.bsky.social on microbiota-mediated immune regulation, with collaboration from Gustavo Caballero-Flores's group! @margaretalexander.bsky.social @asm.org journals.asm.org/doi/10.1128/...
journals.asm.org
β-Hydroxybutyrate precursor 1,3-butanediol modulates enteric pathogen susceptibility and Th17 responses via commensal bacteria | mSystems
Diet is a key determinant of gut microbial composition and mucosal immune function, yet the microbial mechanisms linking diet-mediated metabolic changes to immune regulation remain incompletely understood. T helper 17 (Th17) cells play central roles in both protective mucosal immunity and inflammatory pathology, making them a critical target of immunometabolic regulation. In this study, we show that 1,3-butanediol (BD) treatment, which leads to elevated circulating β-hydroxybutyrate (BHB) independently of diet, is associated with suppression of intestinal Th17 responses, remodeling of the gut microbiota, and reduced levels of segmented filamentous bacteria (SFB). We further demonstrate that BHB-associated microbiota changes are linked to increased susceptibility to enteric infection. This work provides a mechanistic framework illustrating how metabolic state can influence host immunity through selective effects on commensal microbes. These findings inform future studies of microbiota-mediated immune regulation.
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Derek Lowe @dereklowe.bsky.social · 21/09/2026
The Trump administration tries - yet again - to get federal research research funding under its ideological control. Let’s defeat it like we did the last one!
science.org
Yet Another Attempt to Strangle Scientific Funding
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The Center for Microbial Medicine at CHOP @centermicrobialmed.bsky.social · 21/09/2026
In honor of America's 250th birthday, @chopresearch.bsky.social is celebrating some of the "firsts" in science and medicine for Pediatrics that happened here at CHOP Research. Learn about the The Center for Microbial Medicine here:
research.chop.edu
CHOP Research Firsts: Researchers Probe a Microbial World of Possibilities
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Sue Biggins @suebiggins.bsky.social · 21/09/2026
Here it is! @basicsci.fredhutch.org is searching for an associate or senior faculty member!
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Eric Topol @erictopol.bsky.social · 20/09/2026
Link for the latter reuters.com/business/healthcare-pharmaceuticals/trump-seeks-bring-health-research-funding-under-his-control-politico-reports-2026-09-20/
reuters.com
Trump seeks to bring health-research funding under his control, Politico reports
U.S. President Donald Trump is seeking to bring ​a major part of national funding for health ‌research under the control of his political appointees, Politico reported on Saturday.
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Politico @politico.com · 20/09/2026
Trump asked budget chief to draft order bringing health research funding under his control
dlvr.it
Trump asked budget chief to draft order bringing health research funding under his control
The move came after the NIH director refused Trump’s request to cut Harvard grants in an Oval Office meeting.
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Matthew Lawrenz @lawrenzlab.bsky.social · 20/09/2026
Check out our latest study into nutritional immunity by Yersinia led by postdoc Mahendar Kadari. Our investigations into the metallophore yersinopine revealed some surprising differences in zinc acquisition between Y. pestis and Y. pseudotuberculosis.
journals.asm.org
Yersinopine is a primary zinc acquisition system for Yersinia pseudotuberculosis | mBio
Zinc sequestration by the host is a major component of nutritional immunity that restricts bacterial growth during infection. Here, we identify the opine metallophore yersinopine as a primary zinc acq...
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Nature Reviews Microbiology @natrevmicro.nature.com · 16/09/2026
New online! Clostridioides difficile rewires the infant gut
dlvr.it
Clostridioides difficile rewires the infant gut
Nature Reviews Microbiology, Published online: 16 September 2026; doi:10.1038/s41579-026-01375-yIn this study, Semon and colleagues examine the role of Clostridioides difficile colonization in early life and its lasting effects on host development.
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Shobita Parthasarathy @shobitap.org · 17/09/2026
In my new Expert Voices column @science.org, I argue that the Trump admin's science strategy (as written in Kratsios' Science: A Golden Age)--which gives more authority & funding to the private sector to direct the research enterprise--will harm science, and further erode its public accountability.
science.org
Escaping a downward spiral for science and public accountability
In late July, Michael Kratsios, director of the White House Office of Science and Technology Policy (OSTP), released Science—A Golden Age, setting forth a strategy to revitalize US research and innova...
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Jake Choby @jakechoby.bsky.social · 11/09/2026
1. In an Enterobacter isolate, variation in GlpT expression generated the fosfomycin-resistant subpopulation, with FosA enhancing resistance. Glucose increased HR, including in diabetic models, showing the host environment can shape resistance. @natcomms.nature.com www.nature.com/articles/s41... 2/4
nature.com
Heterogeneity in the response to the metabolic environment drives fosfomycin heteroresistance - Nature Communications
Choby et al. show an antibiotic-resistant subpopulation is generated by heterogeneity in expression of an antibiotic importer repressed by environmental glucose, suggesting diabetes-related infection ...
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Jake Choby @jakechoby.bsky.social · 11/09/2026
2. In another Enterobacter isolate, ~1% of cells had preexisting σE activity—and only those cells survived colistin. σE generated bimodality, while PhoPQ generated resistance: two distinct regulatory systems acting together to produce heterogeneity in resistance. www.science.org/doi/10.1126/... 3/4
science.org
Combinatorial action of regulatory systems generates colistin heteroresistance
The mechanism by which phenotypic heterogeneity is generated within a bacterial population and leads to colistin heteroresistance has been unclear. Heteroresistance is a form of antibiotic resistance ...
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Jake Choby @jakechoby.bsky.social · 11/09/2026
I’m excited to share the final two papers from my postdoc with @dweisslab.bsky.social. Together, they reveal two mechanisms of antibiotic heteroresistance (HR) that do not rely on gene copy-number changes, but instead arise from cell-to-cell differences in transcription. A short thread: 1/4
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Harmit Singh Malik @harmitmalik.bsky.social · 10/09/2026
Reposting this ongoing search (any discipline of biology) for an Assistant to Associate level colleague in the Division of Basic Sciences at Fred Hutch. Great city, great colleagues, great core facilities, great trainees.
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Healthcare in Europe @healthcare-europe.bsky.social · 08/09/2026
🦠 #Clostridioides difficile does not cause symptoms in #infants – but that does not mean the #bacteria are harmless: new research led by @joeyzacks.bsky.social from 🇺🇸 @childrensphila.bsky.social links colonization to serious long-term consequences for the developing gut. #CDiff #pediatrics
healthcare-in-europe.com
C. diff: not so harmless for the infant gut
Findings challenge long-held assumptions about infants being protected from negative consequences of the highly contagious bacterium
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Sarah McAnulty, Ph.D. @sarahmackattack.bsky.social · 05/09/2026
Please repost! Drexel announced that it will close the Academy of Natural Sciences public museum- the oldest nat history museum in the US. There are 2 petitions to support the academy. Please sign both & come to our rally Tues. actionnetwork.org/petitions/pe... www.change.org/p/the-academ...
A poster featuring the T-Rex at the cognitive natural sciences, which says save the Academy natural sciences, museum rally in front of the academy 1900 Ben Franklin Parkway, Tuesday, September 8 10 AM. The T-Rex is saying tell Drexel keep the museum open. There’s an RSVP QR code and then the logos of Philly Science Action Skype scientist In Philly on the bottom.
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Max Kozlov @maxkozlov.bsky.social · 04/09/2026
🚨 The NIH is moving to transfer hundreds of millions of dollars in infectious-disease research projects to the DOD under a secret 10-year pact. Here’s what’s happening inside “Operation Prevailing Edge” 🧵👇 www.nature.com/articles/d41...
nature.com
Revealed: inside the US military's plan to tap huge sums from the NIH
An agreement paves the way for hundreds of millions of dollars’ worth of projects to be transferred from the NIH’s institute for infectious diseases to the Department of Defense.
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Joe Zackular @joeyzacks.bsky.social · 04/09/2026
Beautiful perspective on our early-life C. difficile work from Ashley Gilliland and @brucevallance.bsky.social in @science.org! www.science.org/doi/10.1126/...
science.org
Not such a benign colonizer
Clostridioides difficile modulates inflammation and stem cell functions in the infant gut
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Joe Zackular @joeyzacks.bsky.social · 03/09/2026
Excited to share new work from my lab showing that early-life colonization with C. difficile remodels the developing infant gut, published today in @science.org! This study was co-led by two truly amazing scientists: @haidermanzer.bsky.social and Alexa Semon. www.science.org/doi/10.1126/...
science.org
Early-life colonization with Clostridioides difficile remodels the developing gut
Clostridioides difficile causes severe disease in adults but commonly colonizes infants asymptomatically. The consequences of early-life colonization on host development remain unknown. In a neonatal ...
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 04/09/2026
This is a great study by @joeyzacks.bsky.social et al on "asymptomatic" carriage of Cdiff in infants. Must read! Early-life colonization with Clostridioides difficile remodels the developing gut | Science www.science.org/doi/10.1126/...
science.org
Early-life colonization with Clostridioides difficile remodels the developing gut
Clostridioides difficile causes severe disease in adults but commonly colonizes infants asymptomatically. The consequences of early-life colonization on host development remain unknown. In a neonatal ...
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Waggoner Lab @labwaggoner.bsky.social · 04/09/2026
Clostridioides difficile modulates inflammation and stem cell functions in the infant gut @science.org @haidermanzer.bsky.social @joeyzacks.bsky.social @childrensphila.bsky.social www.science.org/doi/10.1126/... www.science.org/doi/10.1126/...
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Sean Gibbons 🦠💩 @gibbological.bsky.social · 03/09/2026
Amazing new work from the @joeyzacks.bsky.social lab on the impacts of ‘asymptomatic’ carriage of C. Diff in the infant gut: “Early-life colonization with Clostridioides difficile remodels the developing gut” www.science.org/doi/10.1126/...
science.org
Early-life colonization with Clostridioides difficile remodels the developing gut
Clostridioides difficile causes severe disease in adults but commonly colonizes infants asymptomatically. The consequences of early-life colonization on host development remain unknown. In a neonatal ...
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Sarah McAnulty, Ph.D. @sarahmackattack.bsky.social · 03/09/2026
Attention Philadelphia! We're hosting a rally to demand that Drexel University maintain The Academy of Natural Sciences Museum open to the public. Join us on Tuesday morning at 10am in front of the academy. Please spread the word, we need all hands on deck! RSVP here: luma.com/1qwnrqz2
A dinosaur on a white background with the text SAve the academy of Natural sciences museum rally Tuesday Sept 8 10am in front of the academy 1900 ben Franklin Parkway. "Tell Drexel University "Keep the museum open!" with the logos for Philly Science Action, Skype a Scientist, and Green Philly
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Haider Manzer @haidermanzer.bsky.social · 03/09/2026
Our new work is out now in @science.org! I'm very grateful for partnership from Alexa Semon the mentorship and support from Joseph Zackular on this project, I'm overjoyed to have had the opportunity to work with such an amazing group of scientists for my first paper from my postdoctoral fellowship!
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Greg Medlock @gregmedlock.bsky.social · 03/09/2026
Fascinating story on the effects of C. difficile colonization in infants.
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Joe Zackular @joeyzacks.bsky.social · 03/09/2026
Excited to share new work from my lab showing that early-life colonization with C. difficile remodels the developing infant gut, published today in @science.org! This study was co-led by two truly amazing scientists: @haidermanzer.bsky.social and Alexa Semon. www.science.org/doi/10.1126/...
science.org
Early-life colonization with Clostridioides difficile remodels the developing gut
Clostridioides difficile causes severe disease in adults but commonly colonizes infants asymptomatically. The consequences of early-life colonization on host development remain unknown. In a neonatal ...
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Shai Bel (The Mucus Man) @mucusman.bsky.social · 01/09/2026
🚨🚨 THE MUCUS IS COMING TO AMERICA!! I'm excited to announce that I will be joining the wonderful @uwmadisonmmi.bsky.social to continue exploring the wonders of mucus!
static.klipy.com
Elmo Wants More Slime
ALT: Elmo Wants More Slime
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 01/09/2026
AGA Clinical Practice Update on Management of Clostridioides difficile Infection in Adults: Expert Review www.sciencedirect.com/science/arti...
sciencedirect.com
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 28/08/2026
Very interesting! Novel surveillance design exploiting network analysis for efficient, rapid detection of emerging Clostridioides difficile strains www.nature.com/articles/s41...
nature.com
Novel surveillance design exploiting network analysis for efficient, rapid detection of emerging Clostridioides difficile strains - Nature Communications
Using network analysis for inter-hospital spread and algorithmically optimising sentinel site selection, the authors design a surveillance system to rapidly detect emerging nosocomial pathogen strains...
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Barbara Moran @moranwriter.bsky.social · 27/08/2026
Yikes: “I cannot do my best work in America,” said Zamore. “I can’t recruit the best people to help me do that, and I can’t promise them an environment where they’ll be safe.” www.wbur.org/news/2026/08...
wbur.org
Why a UMass researcher is among the dozens leaving the U.S. for Canada
A renowned scientist at UMass Chan Medical School is moving his lab to Canada. The Canadian government named RNA researcher Phillip Zamore among the first recipients of awards that will total more tha...
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Greg Harrison @bactophile.bsky.social · 27/08/2026
Gotta say that I’m extra proud of this team effort out in JB! Our understanding of Cdif division is in its infancy & there’s so much work to be done. Shoutout to @shailab.bsky.social for laying the foundation & starting this cool project with @polakuhn.bsky.social!! journals.asm.org/doi/10.1128/...
journals.asm.org
Defining the order of assembly of the Clostridioides difficile divisome complex | Journal of Bacteriology
Bacterial cell division has been extensively studied in model systems, but little is known about how this essential process occurs in the clinically important pathogen Clostridioides difficile. Studie...
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Laura Mike @lauraamike.bsky.social · 26/08/2026
Last year, we reported that arginine stimulates mucoidy in hypervirulent Klebsiella pneumoniae. Now we show an opposing cue, sugars! Here, we report that sugar import suppresses mucoidy. Full story in @natcomms.nature.com: www.nature.com/articles/s41... #microsky #klebclub See 🧵 for a summary:
nature.com
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Harmit Singh Malik @harmitmalik.bsky.social · 21/08/2026
Some folks are giving the current administration the benefit of the doubt when it comes to binning NIH proposals into three broad bins instead of individual scores, ostensibly to solve a problem many complained about. “Beware of Greeks bearing gifts” especially after they’ve already ravaged Troy.
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Drew Hryckowian @a-hryckowian.bsky.social · 20/08/2026
We're looking for someone who is highly organized & detail-oriented to serve as the central operational node and technical backbone of our growing lab. Time will be split equally between lab management (~20 hours/week) and research (~20 hours/week). Apps due EOD Aug 3 jobs.wisc.edu/jobs/researc...
jobs.wisc.edu
Researcher and Lab Manager – Hryckowian Lab - Madison, Wisconsin, United States
Current Employees: If you are currently employed at any of the Universities of Wisconsin, log in to Workday to apply through the internal application process.Job Category:Academic StaffEmployment Type:Terminal (Fixed Term)Job Profile:Researcher IJob Summary:The Hryckowian Lab is seeking a highly organized, detail-oriented Researcher I to serve as the central operational node and technical backbone of the laboratory. This role splits time roughly equally between comprehensive laboratory management (~20 hours/week) and direct bench research assistance (~20 hours/week).The Hryckowian Lab’s research focuses on understanding how resident microbial communities (microbiomes) act as a "microbial shield" to protect against pathogenic bacterial infections, and how to...
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PBS News @pbsnews.org · 19/08/2026
The complaint alleges that the investigations into some of the nation's most prestigious academic institutions were designed to strong-arm the schools into cutting deals for political purposes.https://to.pbs.org/4x7XlYB
pbs.org
Whistleblower alleges political pressure, lack of evidence in antisemitism investigations targeting universities
The complaint alleges that the investigations into some of the nation's most prestigious academic institutions were designed to strong-arm the schools into cutting deals for political purposes.
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Marc Dionne @marcsdionne.bsky.social · 17/08/2026
Be my colleague! We are seeking Assistant/Associate Professors in these areas: Immunology, including but not limited to cellular immunology Infection, Bacteriology or Microbiology This is a good place to work, with excellent students and colleagues and an interactive, encouraging environment.
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Andreas Bäumler @abaumler.bsky.social · 14/08/2026
Check out our New Voices in Microbiology: journals.asm.org/doi/10.1128/...
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Kristen Pidgeon @kristenpidgeon.bsky.social · 11/07/2026
Join our team! The Center for Microbial Medicine and the CHOP Microbiome Center are seeking a new Resource Coordinator to support our research programs and institutional core facilities. @centermicrobialmed.bsky.social chop.wd108.myworkdayjobs.com/CHOPExternal...
chop.wd108.myworkdayjobs.com
Resource Coordinator III - Center for Microbial Medicine & Microbiome Center
SHIFT: Day (United States of America) Seeking Breakthrough Makers Children’s Hospital of Philadelphia (CHOP) offers countless ways to change lives. Our diverse community of more than 20,000 Breakthrou...
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Joe Zackular @joeyzacks.bsky.social · 31/07/2026
Congratulations to the newly minted Dr. @rinniehewlett.bsky.social on an amazing thesis defense!! Super proud of all you’ve accomplished exploring how nutrition and ecology shape susceptibility to C. diff. Excited to watch what’s to come next in the Tufts IRACDA Program and in Aimee Shen’s lab!!
Zackular lab with blue hair
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Joe Zackular @joeyzacks.bsky.social · 31/07/2026
Congratulations to the newly minted Dr. @rinniehewlett.bsky.social on an amazing thesis defense!! Super proud of all you’ve accomplished exploring how nutrition and ecology shape susceptibility to C. diff. Excited to watch what’s to come next in the Tufts IRACDA Program and in Aimee Shen’s lab!!
Zackular lab with blue hair
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Teresa O'Meara @teresaomeara.bsky.social · 29/07/2026
Bacteriology-Focused Assistant Professor Position in Microbiology and Immunology at the University of Michigan Application deadline: August 15, 2026 Come be my colleague!
Bacteriology-Focused Assistant Professor Position in Microbiology and Immunology at the University of Michigan

Application deadline: August 15, 2026

Applicants are requested to send
1) A cover letter (up to 1 page)
2) A CV
3) A description of research interests and goals (up to 2 pages)
4) A description of teaching experience and philosophy (up to 1 page)
5) Contact information including email to solicit 3 letters of recommendation.
Application materials should be combined into one PDF and addressed to the department chair, Dr. Bethany Moore, and sent via email to Sheryl Smith - sherylhs@umich.edu
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CAMB Graduate Group @cambupenn.bsky.social · 29/07/2026
Katharine Hewlett (@rinniehewlett.bsky.social) in the Zackular Lab (@joeyzacks.bsky.social) defends her thesis tomorrow!
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 10/07/2026
@sufs-paris-rp.bsky.social has an easy to use web portal for submitting comments in response to proposed OMB rule change as well as contacting your representatives: fight2win.standupforscience.net?utm_source=o...
fight2win.standupforscience.net
Stand up for Science
Stand up for Science
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