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Shailab Shrestha

@shailab.bsky.social
650 followers 509 following 5 posts

HHMI-LSRF Fellow in the Bernhardt lab at Harvard studying the bacterial cell envelope | PhD studying division and spore formation in Aimee Shen’s lab at Tufts

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Reposted by Shailab Shrestha
Greg Harrison @bactophile.bsky.social · 27/08/2026
Gotta say that I’m extra proud of this team effort out in JB! Our understanding of Cdif division is in its infancy & there’s so much work to be done. Shoutout to @shailab.bsky.social for laying the foundation & starting this cool project with @polakuhn.bsky.social!! journals.asm.org/doi/10.1128/...
journals.asm.org
Defining the order of assembly of the Clostridioides difficile divisome complex | Journal of Bacteriology
Bacterial cell division has been extensively studied in model systems, but little is known about how this essential process occurs in the clinically important pathogen Clostridioides difficile. Studie...
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Reposted by Shailab Shrestha
bioRxiv Biophysics @biorxiv-biophys.bsky.social · 28/08/2026
Structural basis for nutrient-activated channel opening in bacterial spore germination receptors www.biorxiv.org/content/10.64898/20…
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Reposted by Shailab Shrestha
Carballido-López's lab @carballido-lab.bsky.social · 25/07/2026
New pre-print from the lab, about impact of cell wall antibiotics on PG elongation machineries. Any comments and (constructive) criticism are welcome!
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Reposted by Shailab Shrestha
anna brogan @apbrogan.bsky.social · 18/08/2026
This is now published! For those interested in microbial mechanotransduction: www.cell.com/current-biol...
cell.com
Microbial GAIN domains undergo autoproteolysis and enable release of diverse cell-surface-associated proteins
Brogan and Rudner report the identification of a microbial autoproteolytic domain that is structurally homologous to the GAIN domain of eukaryotic adhesion GPCRs. Rather than participating in transmem...
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Reposted by Shailab Shrestha
Kumaran Ramamurthi @ramamurthilab.bsky.social · 20/08/2026
@felixrl.bsky.social told us previously *how* #Staph aureus does orthogonal cell division. In his latest paper he tells us *why*: to arrange cell surface proteins required to form staphylococcal abscess colonies. (Videos S1-S2 are amazing!). 🤯 www.cell.com/cell-reports...
cell.com
Orthogonal cell division mediated by PcdA organizes surface virulence factors to drive staphylococcal abscess community formation
Staphylococcus aureus divides along sequential orthogonal planes, but the function of this geometry has remained unclear. Ramos-León et al. show that orthogonal division promotes uniform deployment of...
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Reposted by Shailab Shrestha
Miloš Tišma @tismaa.bsky.social · 21/07/2026
I'm happy to share the first paper from my postdoc work: www.biorxiv.org/content/10.6... How does RecA find one homologous sequence in an entire chromosome -and what turns that encounter into a repair-competent one? We find that DNA topology is the gatekeeper !! 1/10
biorxiv.org
Chromosome topology gates productive RecA homology search
In homologous recombination, DNA repair depends on recombinase filaments finding homologous templates on chromosomes whose topology is continually remodeled by replication and transcription. How dynam...
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Reposted by Shailab Shrestha
Nature Microbiology @natmicrobiol.nature.com · 03/07/2026
Out Now! The penicillin-binding protein PBP1b fortifies the Escherichia coli division site against osmotic rupture #MicroSky
go.nature.com
The penicillin-binding protein PBP1b fortifies the Escherichia coli division site against osmotic rupture
Nature Microbiology, Published online: 03 July 2026; doi:10.1038/s41564-026-02403-6A specific isoform of PBP1b functions independently of the activator protein, LpoB, to drive generation of a wedge-like peptidoglycan structure that strengthens the division site in Escherichia coli.
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Reposted by Shailab Shrestha
anna brogan @apbrogan.bsky.social · 23/06/2026
Another chapter of my thesis is out! We asked whether we could pair proteome-wide AlphaFold screening with Tn-seq to identify biologically relevant protein-protein interactions. We identify ClcR (formerly YerH) as a component of the Rod complex in Gram-positive bacteria. www.pnas.org/doi/10.1073/...
pnas.org
A broadly conserved gram-positive lipoprotein regulates cell elongation | PNAS
The cell wall peptidoglycan (PG) protects virtually all bacteria from osmotic lysis and specifies cell shape. Synthesis of this exoskeleton is carr...
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Reposted by Shailab Shrestha
anna brogan @apbrogan.bsky.social · 14/05/2026
My latest work! We found that the autoproteolytic GAIN domain which mediates force responsive signaling in adhesion GPCRs is not unique to eukaryotes. The microbial counterparts anchor diverse adhesion, enzymatic, and toxin domains to the cell surface, enabling release by likely mechanical stimuli.
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Reposted by Shailab Shrestha
Amelia McKitterick @amelia-mckitterick.bsky.social · 23/04/2026
Happy to share the finalized version of my paper on phage lysis in bacteria with unique envelopes! 🎉 Bacteriophages target membrane-anchored glycopolymers to promote host cell lysis and progeny release www.pnas.org/doi/10.1073/...
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Reposted by Shailab Shrestha
Félix Ramos-León @felixrl.bsky.social · 13/03/2026
Our work on understanding how Staphylococcus aureus mode of cell division contributes to pathogenesis is now available in bioRxiv
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Reposted by Shailab Shrestha
Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 20/01/2026
Fantastic new work from @bactophile.bsky.social @shailab.bsky.social et al from the Shen lab - Defining the order of assembly of the Clostridioides difficile divisome complex www.biorxiv.org/content/10.6... #modelnotmodel
biorxiv.org
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Reposted by Shailab Shrestha
anna brogan @apbrogan.bsky.social · 13/12/2025
Fer’s tour de force in B. anthracis is out! Fer got Tn-seq running, built an ordered knockout library, defined all essential sporulation genes, and found a peptidoglycan deacetylase inhibitor critical for engulfment. Including our first one-by-all Alphafold screen! journals.plos.org/plosbiology/...
journals.plos.org
Identification of sporulation genes in Bacillus anthracis highlights similarities and significant differences with Bacillus subtilis
How good is Bacillus subtilis as a model for the spore-forming pathogen Bacillus anthracis? Using high throughput genetics to identify B. anthracis sporulation genes and cytological analysis of the mu...
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Reposted by Shailab Shrestha
Greg Harrison @bactophile.bsky.social · 28/10/2025
Excited to share my latest postdoctoral work in the Shen Lab at Tufts! In this study, we follow up on an exciting finding by former grad student @shailab.bsky.social that C diff uses its Class A PBP (PBP1) to drive cell division (unlike previously studied bacteria)! journals.plos.org/plosgenetics...
journals.plos.org
Molecular dissection of Class A PBP function uncovers novel features of the non-canonical Clostridioides difficile divisome complex
Author summary Bacterial cell division is an ancient and essential process, but our molecular understanding of this process is primarily based on studies in a select few model systems. Recent work fou...
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Reposted by Shailab Shrestha
Ákos T Kovács @evolvedbiofilm.bsky.social · 27/09/2025
A global view of morphogenetic peptidoglycan synthases across the domain Bacteria Open Access @femsjournals.bsky.social microLife by Francisco García-del Portillo et al academic.oup.com/microlife/ad...
academic.oup.com
A global view of morphogenetic peptidoglycan synthases across the domain Bacteria
Abstract. Bacteria define their heritable cell shape using membrane integral glycosyltransferases (GTases) of the shape, elongation, division and sporulati
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Reposted by Shailab Shrestha
Renske van Raaphorst 🟥 @vrrenske.bsky.social · 26/09/2025
Happy to finally show our story of the connection between nucleoid conformation, transcription & predation in our favorite predator Bdellovibrio bacteriovorus. 🧵 1/n
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Reposted by Shailab Shrestha
Joe Wade @joe-wade.bsky.social · 11/09/2025
Check out our new paper: a review of translational coupling, the phenomenon where translation of one prokaryotic gene can promote translation of the gene downstream. We cover the history, and delve into the mechanism, which is still not fully understood. journals.asm.org/doi/10.1128/...
journals.asm.org
Translational coupling of neighboring genes in prokaryotes | Journal of Bacteriology
Prokaryotic genes are arranged in operons, with functionally related genes often located adjacent to one another (1). There are several ways in which the operonic organization of genes facilitates the...
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Reposted by Shailab Shrestha
Jörg Vogel @jorg-vogel-lab.bsky.social · 10/09/2025
Looking for a new approach to studying or eliminating phages? Check out our study introducing anti-phage ASOs (antisense oligos) out in @Nature today. nature.com/articles/s4158…
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Reposted by Shailab Shrestha
Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 30/06/2025
Flagellar switch inverted repeats impact heterogeneity in flagellar gene expression and thus C. difficile RT027/MLST1 virulence www.sciencedirect.com/science/arti...
sciencedirect.com
Flagellar switch inverted repeats impact heterogeneity in flagellar gene expression and thus C. difficile RT027/MLST1 virulence
Clostridioides difficile (C. difficile) RT027 strains cause infections that vary in severity from asymptomatic to lethal, but the molecular basis for …
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Reposted by Shailab Shrestha
Amelia McKitterick @amelia-mckitterick.bsky.social · 24/06/2025
I'm pleased to announce that I will be starting my lab as an Assistant Professor at UMass Chan Medical School in August! My group will study phages that infect corynebacteria and mycobacteria to understand bacterial cell envelope assembly and phage gene function. Website and more info to come soon!
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Reposted by Shailab Shrestha
anna brogan @apbrogan.bsky.social · 17/06/2025
Very happy to share that a large part of my thesis work is out today: B. subtilis uses the second messenger c-di-AMP to modulate its turgor pressure in response to the state of its cell envelope. www.nature.com/articles/s41...
nature.com
Cyclic-di-AMP modulates cellular turgor in response to defects in bacterial cell wall synthesis - Nature Microbiology
Brogan et al. uncover a signalling pathway in which levels of the nucleotide second messenger c-di-AMP increase in response to defects in cell wall synthesis. This regulatory pathway decreases turgor ...
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Reposted by Shailab Shrestha
Félix Ramos-León @felixrl.bsky.social · 09/06/2025
Excited to share our latest review! Check it out to see what we know so far about how Staphylococcus aureus coordinates key processes during its cell cycle
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Reposted by Shailab Shrestha
Paula Navarro @navarropaula.bsky.social · 03/04/2025
🚨👉 Please check our recent work on bacterial cell division. In situ Cryo-ET reveals the cellular function of the penicillin binding protein 1b supported by AFM, live-cell imaging, in silico AlphaFold proteome screen and TIRFM. Hope you enjoy the read! #teamtomo #cryo-ET ❄️🔬🐎 big thanks to the team!
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Reposted by Shailab Shrestha
Boston Bacterial Meeting @bostonbacteria.bsky.social · 01/02/2025
SAVE THE DATE ‼️ 📆 📢 BBM 2025 will be held on June 9-10th at the Harvard Science Center feat. the one and only Dr. Petra Levin as keynote! We can't wait to see you there. Registration and scholarship applications open next week.
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Reposted by Shailab Shrestha
anna brogan @apbrogan.bsky.social · 28/01/2025
Angelika Gründling’s work from her sabbatical in the Bernhardt-Rudner labs is out. She came with the goal of finding the missing G+ phosphatidylglycerol phosphate phosphatase and found it with time to spare. I can also highly recommend her as a bay mate! www.pnas.org/doi/10.1073/...
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Reposted by Shailab Shrestha
Dipak Kathyat @kathayatdipak.bsky.social · 24/01/2025
Excited to share my recent work published in #JBacteriology @asm.org ! We found that LD-transpeptidases drive phenotypic differentiation of Legionella and Coxiella into intrinsically resistant forms. Grateful to all who made this possible ! journals.asm.org/doi/10.1128/...
journals.asm.org
LD-transpeptidase-mediated cell envelope remodeling enables developmental transitions and survival in Coxiella burnetii and Legionella pneumophila | Journal of Bacteriology
Coxiella burnetii and L. pneumophila cause Q Fever and Legionnaire’s disease in humans, respectively. There is a lack of effective treatments for fatal chronic infections caused by these pathogens, pa...
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Reposted by Shailab Shrestha
Anna Kuchina @annabiosys.bsky.social · 16/01/2025
How can single-cell transcriptomics profile phage infection in individual microbial cells? Check out our preprint with Anika Gupta, Norma Morella, Dmitry Sutormin & other authors, in collaboration with Georg Seelig (UW) and Neel Dey (Fred Hutch). www.biorxiv.org/content/10.1...
biorxiv.org
Combinatorial phenotypic landscape enables bacterial resistance to phage infection
Success of phage therapies is limited by bacterial defenses against phages. While a large variety of anti-phage defense mechanisms has been characterized, how expression of these systems is distribute...
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Reposted by Shailab Shrestha
Chen Zhang @zchenstory.bsky.social · 20/12/2024
HARIBO bacter for happy holidays
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Reposted by Shailab Shrestha
Prahathees Eswara @eswaralab.bsky.social · 28/11/2024
Happy Thanksgiving! Thanks to @dipanwitab.bsky.social, Asher, @lilymcknight.bsky.social, and Pilar (a very talented undergrad) for getting this manuscript to the finish line. Thanks to MBoC for the excellent manuscript review experience. Now it is time for turkey, pecan pie, and more.
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Reposted by Shailab Shrestha
Yunha Hwang @microyunha.bsky.social · 19/11/2024
Hello 🦋 #protein / #microbio / #BioML community! We are excited to release Gaia🌎, a context-aware protein search tool, extending protein search and discovery capabilities beyond sequence and structure, to include *genomic context*. Search your favorite protein sequences with on gaia.tatta.bio
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Matt Eldridge @caspasekid.bsky.social · 11/11/2024
New paper from Helaine lab at Harvard Medical School, check it out! www.cell.com/cell-host-mi...
cell.com
A prophage competition element protects Salmonella from lysis
Sargen and Helaine find a prophage-encoded anti-phage defense element that blocks the lytic cycles of co-residing prophages. They further find that prophage competition occurs in Salmonella persisters...
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Reposted by Shailab Shrestha
Félix Ramos-León @felixrl.bsky.social · 10/11/2024
go.bsky.app/L3L2iFz
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