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Jan Gründemann

@jangrundemann.bsky.social
622 followers 955 following 34 posts

Neuroscience.

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Reposted by Jan Gründemann
Matt Lovett-Barron @mlovettbarron.bsky.social · 23/09/2026
Our lab's latest paper on the neurobiology of collective behavior is now published www.nature.com/articles/s41... This is the work of a great team in the lab - led by Jo-Hsien Yu, with Geoff Meyerhof, Jimjohn Milan, and Julia Napoli @nature.com @danionella.bsky.social
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bioRxiv Neuroscience @biorxiv-neursci.bsky.social · 11/09/2026
Miniscope Zero: a fully wireless, single-cell-resolution miniature microscope for imaging neural dynamics in freely behaving animals www.biorxiv.org/content/10.64898/20…
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Rainer Friedrich @rainerfriedrichlab.bsky.social · 10/09/2026
Just out in Nat Neurosci: disentangling of neural odor manifolds in "olfactory cortex" of adult zebrafish after learning. Great work by Bo, Nesibe et al and wonderful collaboration with @sueyeonchung.bsky.social that fundamentally changed my view of olfactory cortex. www.nature.com/articles/s41...
rdcu.be
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Luke Sjulson @lukesjulson.bsky.social · 09/09/2026
Congrats to Renata Batista-Brito, Geoffrey, and Jacob on this monster paper! It’s an amazing piece of work, and I’m thrilled I got the chance to contribute to it
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Misha Ahrens @mishaahrens.bsky.social · 09/09/2026
Whole-body cellular activity imaging in zebrafish, headed by Virginie Ruetten @vmsruetten.bsky.social - new paper is out: www.nature.com/articles/s41...
nature.com
Imaging cellular activity across all organs reveals body-wide circuits - Nature
An imaging system developed to record cellular activity throughout the whole body of zebrafish captures cellular organ dynamics and identifies multiple distributed circuits.
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Adam Carter @carterlab.bsky.social · 08/09/2026
Excited to share our new Cell Reports paper on paratenial thalamus (PT), which identifies a molecular marker for PT, and shows how PT interacts with the medial prefrontal cortex, nucleus accumbens, and basolateral amygdala, all done by my grad student Nigel Dao: www.sciencedirect.com/science/arti...
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Matteo Carandini @carandinilab.net · 09/09/2026
If you thought "everything is everywhere" in the brain: inactivations reveal a clear distinction of labor. Sensory areas sense, colliculus promotes eligible actions (!), and prefrontal cortex integrates. The role of superior colliculus in a logistic decision www.biorxiv.org/content/10.6...
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Rainer Friedrich @rainerfriedrichlab.bsky.social · 08/09/2026
New preprint by Tommaso: olfactory cortex (of zebrafish) represents not only odor information but also temporal context, and these multimodal representations are sharpened after learning. And check out Tommaso's new method for 2P imaging in awake adult zebrafish! www.biorxiv.org/content/10.6...
biorxiv.org
Joint experience-dependent representations of odors and temporal context in the zebrafish homolog of piriform cortex
Intelligent behavior requires experience-dependent internal representations of relevant information. We examined representational learning in telencephalic area pDp of adult zebrafish, the homolog of ...
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Sabine Krabbe @sabinekrabbe.bsky.social · 07/09/2026
Amygdala dopamine is often studied in response to external rewards or threats. But what happens during self-initiated exploration? Our new preprint suggests a broader role: a state-dependent salience signal linking exploration and associative learning. 👉 www.biorxiv.org/content/10.6...
biorxiv.org
Basolateral amygdala dopamine signals behavioural salience across exploration and learning
Animals must balance exploration with threat avoidance, yet how neuromodulatory signals shape information-seeking states remains unclear. Using fibre photometry recordings in the basolateral amygdala ...
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Matteo Carandini @carandinilab.net · 04/09/2026
Brainwide Representation of Navigation Enny recorded >20k neurons across forebrain and midbrain while mice navigated 1D VR. She found that every region encodes spatial position! Hippocampal formation stands out only in uniformity of the representation. But visual cortex beats it in precision...
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Tom Kash @superkash.bsky.social · 04/09/2026
Jobe Ritchie , a postdoc in the lab, decided he wanted to build a better platform for scoring behavior. www.biorxiv.org/content/10.6...
biorxiv.org
ABEL: an active-learning behavior estimation and labeling platform
Detailed behavior analysis is essential for thorough characterization of ethologically relevant behaviors in model organisms, yet manual annotation of the full behavioral repertoire remains subjective...
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Enny van Beest @ennyvb.bsky.social · 04/09/2026
Textbook: tracking position during navigation is primarily the job of the hippocampus. Recent findings suggest a more complicated story. Recording >20k neurons brainwide, we indeed find spatial representations in every region! With @kenneth-harris.bsky.social and @carandinilab.net
Brainwide representations of a virtual corridor
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Jieyu Zheng @jieyusz.bsky.social · 04/09/2026
How fast can mice learn complex mazes? With @mameister4.bsky.social we reveal memory, generalization, latent learning, and remote credit assignment of mice in the Manhattan Maze. Do mice born without a cortex or hippocampus have them too? Check it out! www.biorxiv.org/content/10.6...
biorxiv.org
Rapid spatial cognition in mice, with and without neocortex and hippocampus
Rapid learning, memory, and generalization are often attributed to circuits of the neocortex and hippocampus, but their specific role remains unclear. To examine these cognitive abilities together in ...
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Jan Gründemann @jangrundemann.bsky.social · 04/09/2026
Wow! 🧠 www.biorxiv.org/content/10.6... www.biorxiv.org/content/10.6... www.biorxiv.org/content/10.6...
biorxiv.org
Brainwide representation of navigation
Tracking your position in the environment during navigation requires integrating multiple signals into a spatial representation. This process is thought to occur primarily in the hippocampal formation...
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Julijana Gjorgjieva @gjorjulijana.bsky.social · 23/08/2026
Supper happy to see this published. In short, we show how dendrites and inhibition allow neural circuits to learn new representations while protecting representations that are already stored in the network. See below for a detailed post by @cmiehl.bsky.social: www.sciencedirect.com/science/arti...
sciencedirect.com
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bioRxiv Neuroscience @biorxiv-neursci.bsky.social · 19/08/2026
Distinct prefrontal-amygdala connectivity drives consolidated fear memories www.biorxiv.org/content/10.64898/20…
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Alex Schier @schierlab.bsky.social · 19/08/2026
What regulates the urge to sleep? William Joo and colleagues identified brain regions that reflect how long mice have been awake. Strikingly, inhibiting one of these regions reduces sleep by 70%, without the major behavioral deficits associated with sleep deprivation. www.nature.com/articles/s41...
nature.com
Wake-activated neuronal populations that regulate sleep drive - Nature
Whole-brain activity mapping, targeted cell manipulations and electrophysiology in mice identify wake-activated neuronal populations that are crucial for sleep drive and can persistently red...
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Jess Cardin @jess-cardin.bsky.social · 18/08/2026
Yale Neuroscience 🧠 @yaleneuro.bsky.social is hiring this year! We have 2 searches, one cell/molecular/systems neuro (apply.interfolio.com/190736) and one computational neuro (apply.interfolio.com/190740). Got questions about the searches, the department, or the process? Please ask, happy to chat!
apply.interfolio.com
Apply - Interfolio {{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
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Matteo Carandini @carandinilab.net · 17/08/2026
I am proud of this paper. Since it came out in 2022 it has received 0 citations (yes that's a zero). But multiple young scientists have found it useful! (from other labs, so they were not coerced...). Perhaps you will find it useful too? SOME TIPS FOR WRITING SCIENCE doi.org/10.1523/ENEU...
doi.org
Some Tips for Writing Science
When preparing a scientific paper, we typically write with coauthors who have different backgrounds and styles, and we target readers who have little time and patience. To help both readers and writer...
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Yulong Li Lab @yulonglilab.bsky.social · 13/08/2026
A long-standing question in neuroscience is why the eCB system uses two ligands for the same receptors and how their release differs. To address it, we’re happy to share a pair of selective GRAB sensors that detect 2-AG and AEA, respectively, in real time. biorxiv.org/content/10.6...
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The Transmitter @thetransmitter.bsky.social · 10/08/2026
Neuroscience hasn’t been able to investigate the role of astrocytes in memory because “all the tools we have to understand how the brain works are related to neurons." #neuroskyence By @davidbrz.bsky.social www.thetransmitter.org/memory/are-p...
thetransmitter.org
Are parts of the memory trace found in the ‘astroengram?’
Neurons have long taken top billing in memory, but researchers are making the case for astrocytes.
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Waggoner Lab @labwaggoner.bsky.social · 05/08/2026
Reshaping cortical circuits through stimulation is an emerging therapy for restoring cognitive function. Here find that stimulation strengthens cell assemblies, which is linked to cell-type-specific gene regulation @nature.com @konopkalab.bsky.social www.nature.com/articles/s41...
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Peter Rupprecht @ptrrupprecht.bsky.social · 07/08/2026
Excited to share our work now in Nature Methods! We wrote this manuscript to help others better analyze and interpret calcium imaging data. As a central aspect, we show why nonlinear behavior of calcium indicators matters in practice. Very happy about this work!
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bioRxiv Neuroscience @biorxiv-neursci.bsky.social · 06/08/2026
The Cellular and Synaptic Actions of Dopamine During Behavior www.biorxiv.org/content/10.64898/20…
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Lorenzo Posani @lorenzoposani.com · 06/08/2026
For a neural circuit to be "specialized", does it need specialized neurons? In our new work - now out in @NatureNeuro - we address this question in the BLA, using representational geometry to propose a new population-centric way of defining circuit specialization. 🧵👇 1/
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Christine Grienberger @cgrienberger.bsky.social · 05/08/2026
🎉 this paper is now out - we show how subicular plateaus are linked to reward locations. Congratulations to the whole team! www.cell.com/cell-reports...
cell.com
Subicular plateaus signal reward locations during goal-directed behavior
Using in vivo whole-cell recordings during goal-directed navigation, Bhatia, Adel, and Grienberger identify plateaus as a prominent feature of subiculum activity. These events preferentially occur nea...
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Jan Gründemann @jangrundemann.bsky.social · 05/08/2026
Structural plasticity of the axon initial segment is important for the regulation of neuronal activity. Some recent thoughts on how AIS plasticity may shape learning and memory in neuronal circuits in health and disease: doi.org/10.1016/j.co...
doi.org
Redirecting
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koseskalab.bsky.social @koseskalab.bsky.social · 04/08/2026
🧠New preprint! We identify minimal circuit motifs that generate diverse selectivity to support categorization, comparison, and decision-making. Trained RNNs converge on the same motifs, revealing principles that link connectivity to computation. @mpinb.mpg.de www.biorxiv.org/content/10.6...
biorxiv.org
Structured connectivity for structured sequential computations
Cortical computations emerge from the coordinated activity of recurrent neural circuits and are often described through population dynamics and neuronal selectivity. However, how the backbone of the c...
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Letizia Signorelli @letiziasignorelli.bsky.social · 03/08/2026
4/6 This is where we were surprised: we built Nyx for our lab, it generalised well beyond it. The same pipeline worked across mice 🐭, rats 🐀, humans 🧑, a jackdaw 🐦 and a tegu lizard 🦎. Across early development through ageing. Across different brain regions and intracranial recordings.
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Letizia Signorelli @letiziasignorelli.bsky.social · 03/08/2026
🌙 Our new preprint is out! We present Nyx, an open-source unsupervised framework for sleep scoring across species, lifespan and modalities. Validated on 19 datasets and 8,000 hours of sleep, from mice to humans, lizards and birds, across development, ageing, health and disease.
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Ben Saunders @bensaunders.bsky.social · 03/08/2026
The final version of our amygdala dopamine paper is out! BLA dopamine dynamically tracks emotional salience and not value or reward prediction error. Congrats to Dr. Megan Brickner!! www.nature.com/articles/s41...
nature.com
Basolateral amygdala dopamine transmits emotional salience - Nature Communications
The basolateral amygdala dopamine system has received little attention. Here, authors show that BLA dopamine plays a unique role in learning, by encoding the emotional salience of sensory cues to supp...
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Jonas Wietek @jwietek.bsky.social · 03/08/2026
light-activated tetanus neurotoxin (LATeNT) by the @aliceyting.bsky.social lab. Includes a comparison with the light-switchable PdCO (www.nature.com/articles/s41...), showing a long lasting inhibition for 1h hour post illumination. www.nature.com/articles/s41...
nature.com
Light-activated tetanus neurotoxin for conditional proteolysis and inducible synaptic inhibition in vivo - Nature Methods
LATeNT is a light-activatable form of tetanus neurotoxin that can be used for spatiotemporally precise inhibition of exocytosis in neurons and other cells. It can inhibit synaptic transmission in vivo...
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bioRxiv Neuroscience @biorxiv-neursci.bsky.social · 31/07/2026
Memory encoding reprograms neuronal transcriptional responses via durable chromatin remodeling www.biorxiv.org/content/10.64898/20…
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Jan Gründemann @jangrundemann.bsky.social · 03/08/2026
But What Behavior? arxiv.org/abs/2607.28898
arxiv.org
But What Behavior?
What is a natural behavior? I argue that the study of natural behaviors is often the study of the spontaneous behaviors of animals placed in quantifiably different environments. For behavioral general...
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Johannes Felsenberg @felsenberg.bsky.social · 31/07/2026
Finally out in @natneuro.nature.com! A forgotten memory isn't always gone. We show that forgotten memories persist as silent memory traces, can be recovered by reminders, and can even be reconstructed into false memories. Excited to finally share this work! www.nature.com/articles/s41...
nature.com
Creating true and false memories from forgotten information in Drosophila - Nature Neuroscience
Forgotten memories in Drosophila persist as silent memory traces and can be recovered by reminder cues. Manipulating reminders can create false memories, showing that memory reconstruction flexibly in...
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Alana Darcher @alanadarcher.bsky.social · 30/07/2026
🎉 *extremely* excited to share our human single neuron + movie dataset is out in #ScientificData! 📄 Human neuron activity during an 83-minute movie from 2,286 neurons and 29 patients 🔗https://www.nature.com/articles/s41597-026-07955-0 1st public dataset from @humansingleneuron.bsky.social!🧵
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FMI science @fmiscience.bsky.social · 30/07/2026
Today in @natneuro.nature.com, researchers led by @felsenberg.bsky.social report that memories can persist as silent traces, recoverable with the right reminder. But misleading cues can distort recall and create false memories—showing how remembering can rewrite the past. www.fmi.ch/news-events/...
fmi.ch
Forgotten memories can leave silent traces in the brain
A forgotten memory is not always a vanished one. FMI neuroscientists investigating the fruit fly brain found that some memories become inaccessible while leaving a silent trace behind. The right remin...
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Anyi Liu @anyiliu.bsky.social · 29/07/2026
Pyramidal cells in the cortex send a long apical dendrite to layer 1. What is its role? What happens when it's gone? ✂️ A causal spatial role for apical dendrites in the cortex Out today with @kenneth-harris.bsky.social, @carandinilab.net and @fedrossi.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
A causal spatial role for apical dendrites in the cortex
Cortical pyramidal neurons project a long apical dendrite to layer 1 (L1), to receive synaptic inputs that are thought to provide contextual and possibly suppressive modulation. In visual cortex, thes...
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Grubb Lab @grubblabneuro.bsky.social · 28/07/2026
Registration now open for our AIS meeting, organised with @royalsociety.org in Edinburgh, 7th-8th December 2026! royalsociety.org/science-even...
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bioRxiv Neuroscience @biorxiv-neursci.bsky.social · 28/07/2026
Neuropixels 1536 Channel Quad Base probe reveals brain-wide communication underlying flexible sensorimotor sequences www.biorxiv.org/content/10.64898/20…
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Leah Banellis @leahbanellis.bsky.social · 23/07/2026
Sensing your body (‘Interoception’) is everywhere in theories of mental health. But when we tested how well hundreds of people sensed their heart and lungs, the link to symptoms was almost nowhere to be found. 💣 🚨New @natmentalhealth.nature.com paper 🚨🎉 asks why 🧵 www.nature.com/articles/s44...
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bioRxiv Neuroscience @biorxiv-neursci.bsky.social · 21/07/2026
Cortex-wide representational drift of different layers www.biorxiv.org/content/10.64898/20…
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BrainGlobe @brainglobe.info · 16/07/2026
Nice Claude skill to create basic neuroanatomical visualisations with BrainGlobe & blender: github.com/SamedVossber... The single prompt "Use the allen mouse brain atlas to create an animation to show primary visual cortex and primary motor cortex" gives:
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stefanofusi.bsky.social @stefanofusi.bsky.social · 15/07/2026
From a great collaboration with @lorenzoposani.com, @shuqiw.bsky.social, Samuel Muscinelli, Liam Paninski, now in Nature: www.nature.com/articles/s41...
nature.com
Rarely categorical, highly separable representations along the cortical hierarchy - Nature
Cortical circuits prioritize diversity over categorical structure, supporting a computational regime geared towards high-dimensional, highly separable neural representations.
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Ana Dorrego Rivas @adorrego.bsky.social · 15/07/2026
“Crossing barriers at the axon initial segment” comes to Edinburgh, 7–8 Dec 2026. A fantastic line-up covering AIS structure, function, plasticity and disease, plus posters and discussions. Free to attend, with wintry Edinburgh as the backdrop 😉 Details below! royalsociety.org/science-even...
royalsociety.org
Crossing barriers at the axon initial segment | Royal Society
Theo Murphy meeting organised by Professor Matthew Grubb, Professor Maren Engelhardt and Professor Maarten H P Kole
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Jan Gründemann @jangrundemann.bsky.social · 06/07/2026
If you are at #FENS2026 stop by at our lab’s posters by Eva Sebastian and @paricio-montesinos.bsky.social on the role of sensory thalamus in learning and memory.
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bioRxiv Neuroscience @biorxiv-neursci.bsky.social · 04/07/2026
A cellular midbrain mechanism for executing fast and reliable escape www.biorxiv.org/content/10.64898/20…
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Peter Rupprecht @ptrrupprecht.bsky.social · 02/07/2026
Looking forward to #FENS2026 next week in Barcelona! I will present a poster on effects of locus coeruleus and arousal on astrocytes and neurons in hippocampus: PS06-09PM-201 PhD student Shinjini Ghosh will present a poster on a Theremin-based auditory virtual environment for mice: PS04-08PM-568
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Emre Yaksi @emreyaksi.bsky.social · 02/07/2026
I am excited to announce the latest paper from our lab, published in Science ! In this study, we show that thalamocortical-like circuits in the zebrafish brain process sensory information hierarchically across topographically organized forebrain circuits.
science.org
Hierarchical sensory processing in zebrafish thalamocortical-like circuits
Thalamocortical projections shape the functional regionalization and parallel sensory computations across the mammalian cortex. However, the principles of thalamocortical computations in non-mammalian...
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bioRxivpreprint @biorxivpreprint.bsky.social · 02/07/2026
Dual thalamic drive defines the intra-amygdala wiring complexity www.biorxiv.org/content/10.64898/20…
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