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Flavio Donato

@flaviodonato82.bsky.social
1.5K followers 1.8K following 42 posts

Interested in all things memory, space, and the infant brain. Assistant Professor @biozentrum @unibasel_en. Donatolab.com 🧠👨🏻‍🔬🏳️‍🌈

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Reposted by Flavio Donato
Andrej Bicanski @andrejbicanski.bsky.social · 22/09/2026
Now accepted and published --- with many thanks to the referees for helping sharpen the manuscript. Long time since the first notes. Good to see it officially out. www.cell.com/current-biol...
cell.com
A vector navigation and inference architecture can construct universal cognitive maps for abstract reasoning
Bicanski proposes an algorithm and neural mechanisms for the iterative construction of abstract cognitive maps via non-local inference. Map positions are triangulated and memorized by a set of extant ...
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Maria Hondele @mariahondele.bsky.social · 18/09/2026
The heatwave is finally over - just in time for our “Frosty Foci” to finally come online! ❄️🦠 We found that E. coli builds a transient nucleolus-like ribosome biogenesis compartment during cold adaptation, when RNA (mis)folding makes ribosome biogenesis challenging.
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Carolina Rezaval @crezaval.bsky.social · 16/09/2026
We’re hiring two postdocs! Join our Lab @unibirmingham.bsky.social to uncover how the brain resolves behavioural conflicts. Deadline: 22 September 2026 @wellcometrust.bsky.social Please share! www.rezavallab.org
rezavallab.org
Home
​ ​Animals must make crucial behavioural choices on a minute by minute basis to survive in a changing environment. A long-standing enigma is, how are alternative options evaluated in the brain...
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Alex Schier @schierlab.bsky.social · 08/09/2026
The first Danionella paper from the lab. Danionella cerebrum is transparent, so you can see all of the internal organs. But what sensory information are the organs sending to the brain? In our new preprint, Emily Bayer wanted to find out. 1/4 www.biorxiv.org/content/10.6...
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Rainer Friedrich @rainerfriedrichlab.bsky.social · 08/09/2026
Imaging of activity in the telencephalon of adult zebrafish moving through a virtual reality revealed amazingly precise, structured internal representations of spatial environments. And they get better over time! Great work by Kim! Thanks also to Sriram and Jan. www.biorxiv.org/content/10.6...
biorxiv.org
Dynamic cognitive representations in the dorsal pallium of adult zebrafish
Brains rely on internal models of the world to interpret sensory input and to simulate the future. In the mammalian hippocampal-entorhinal network, environments are represented by cognitive maps that ...
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Jim Heys @jim-heys.bsky.social · 03/09/2026
I’m very excited to share our new paper, led by the very talented Jack Bowler, a postdoc in the lab! www.nature.com/articles/s41... We all know that the way we learn something matters. But how does a training curriculum actually shape how the brain learns to solve a problem? a 🧵 1/N
nature.com
Structured experience shapes strategy learning and neural dynamics in the medial entorhinal cortex - Nature Neuroscience
The authors use recurrent neural networks to predict how structured prior experience shapes neural dynamics as mice learn flexible timing strategies during complex context-dependent behavior.
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Reposted by Flavio Donato
Julijana Gjorgjieva @gjorjulijana.bsky.social · 23/08/2026
Supper happy to see this published. In short, we show how dendrites and inhibition allow neural circuits to learn new representations while protecting representations that are already stored in the network. See below for a detailed post by @cmiehl.bsky.social: www.sciencedirect.com/science/arti...
sciencedirect.com
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Flavio Donato @flaviodonato82.bsky.social · 18/08/2026
This is a fantastic opportunity to work with a visionary and kind mentor!
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Matteo Carandini @carandinilab.net · 17/08/2026
I am proud of this paper. Since it came out in 2022 it has received 0 citations (yes that's a zero). But multiple young scientists have found it useful! (from other labs, so they were not coerced...). Perhaps you will find it useful too? SOME TIPS FOR WRITING SCIENCE doi.org/10.1523/ENEU...
doi.org
Some Tips for Writing Science
When preparing a scientific paper, we typically write with coauthors who have different backgrounds and styles, and we target readers who have little time and patience. To help both readers and writer...
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Reposted by Flavio Donato
Amar Sahay @amarsahay.bsky.social · 12/08/2026
Excited to share our discovery of a convergent mechanism for cognitive restoration and seizure suppression in neurodevelopment disorders in Nature (Open Access www.nature.com/articles/s41...). Led by two amazing neuroscientists, @yutzushih.bsky.social and @jasonalipio.bsky.social + a great team 1/2
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Edvard I Moser @edvardmoser.bsky.social · 06/08/2026
Out now in @science.org : How does the brain rapidly scan space to guide navigation? We found that the brain’s internal map is continuously retuned from moment to moment, focusing neural activity on what matters most. 🧵1/8 👉 www.science.org/doi/10.1126/...
science.org
Adaptive modulation of theta sweeps in the brain’s navigation circuit
Efficient navigation requires prioritizing information from behaviorally relevant locations. In rats, such selective sampling may arise from theta-paced sweeps in grid and place cell populations, whic...
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Reposted by Flavio Donato
Tomás Ryan @tjryan.bsky.social · 04/08/2026
Announcing #engramsensembles '27, to be held at @tcddublin next May. Registration and abstract submission will open in autumn 2026.
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Maria Hondele @mariahondele.bsky.social · 03/08/2026
🚀 New preprint 🥳 Fantastic work by our recent PhD graduate Daan ! How are mRNPs remodeled as they exit the nucleus? We identify PAIP1 as a factor that promotes exchange of the nuclear poly(A)-binding protein PABPN1 for cytoplasmic PABPC1, coupling mRNA export to cytoplasmic mRNP maturation.
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Matteo Carandini @carandinilab.net · 31/07/2026
The apical dendrite looks great, and does wonders in a slice. What does it do in the living cortex? It depends on the cell. A causal spatial role for apical dendrites in the cortex www.biorxiv.org/content/10.6... by @anyiliu.bsky.social with @kenneth-harris.bsky.social and @fedrossi.bsky.social
A cartoon providing a graphical summary of the paper. It is divided in 3 rows.

The top row shows a pyramidal cell and its apical tuft, and shows the two experiments that we ran: optical dendritic pruning (chopping off the apical tuft), and synaptic imaging done in the same neurons where we do somatic imaging. 

The middle row shows the results pertaining to neurons that prefer large stimuli (this is visual cortex): pruning reduced their responses, and the receptive fields of apical synapses are far away from the that of the soma. 

The bottom row shows the results pertaining to neurons that prefer small stimuli: pruning seemed to do nothing to the responses, and the receptive field of apical synapses are right around that of the soma.
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Johannes Felsenberg @felsenberg.bsky.social · 31/07/2026
Finally out in @natneuro.nature.com! A forgotten memory isn't always gone. We show that forgotten memories persist as silent memory traces, can be recovered by reminders, and can even be reconstructed into false memories. Excited to finally share this work! www.nature.com/articles/s41...
nature.com
Creating true and false memories from forgotten information in Drosophila - Nature Neuroscience
Forgotten memories in Drosophila persist as silent memory traces and can be recovered by reminder cues. Manipulating reminders can create false memories, showing that memory reconstruction flexibly in...
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Emre Yaksi @emreyaksi.bsky.social · 17/07/2026
🧠 A new paper from our lab is out! In this study, we explore how dorsal raphe nucleus (DRN) circuits modulate forebrain activity and behavior. www.nature.com/articles/s41...
nature.com
Topographically organized dorsal raphe activity modulates forebrain sensory-motor representations and contributes to defensive behaviors - Nature Communications
Functional heterogeneity of dorsal raphe nucleus is not fully understood. Here authors show topographically organized sensory and locomotor responses from the zebrafish dorsal raphe and its forebrain ...
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Oscar Chadney @oscar-chadney.bsky.social · 09/07/2026
I’m excited to share our latest preprint, and the main work from my PhD, on the role of the direct entorhinal input in hippocampus CA1 spatial coding. 1/9
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fkne-scholars.bsky.social @fkne-scholars.bsky.social · 07/07/2026
Welcome to the 15 newly selected #FENSKavliScholars! Representing 12 European countries, they join a network of 30 Scholars across 21 countries and 25 nationalities. 🧠✨With thanks to @fens.org, @kavlifoundation.org, @alleninstitute.org and our partners for supporting FKNE. h1.nu/1t8Lw
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Sarah Power @sarahdpower.bsky.social · 03/07/2026
📍 @fens.org Tuesday, 14:00 *Poster: PS02-07PM-070 📍 @infantstudies.bsky.social Thursday, 16:45 *Symposium 8.6: Development of memory encoding, consolidation and retrieval in infants 📍 @fitngin.bsky.social I am hiring at the PhD/postdoc level, if you might be interested please come say hey
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Reposted by Flavio Donato
Maria Antonietta Tosches @matosches.bsky.social · 29/06/2026
Better late than never... an update on the recent work from the lab. First of all, the Foundation: @astridd93.bsky.social phenomenal paper on the evolution of layering in the cerebral cortex 🧵1/7 www.biorxiv.org/content/10.1...
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Caswell Barry @caswell.bsky.social · 23/06/2026
Really excited about this work with the awesome Will de Cothi & @shipleysj.bsky.social, out in Nature Reviews Neuroscience. We propose acetylcholine is an analogue of dopamine — tracking not reward prediction errors but state-transition prediction errors. doi.org/10.1038/s41583-026-01058-w
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Taro Kitazawa @kitazawa-taro.bsky.social · 18/06/2026
Please RP! Excited to share our new preprint: “Single-cell chromatin tracing reveals multimodal molecular programs during memory formation” We built a single-cell multiomic atlas of aversive learning and used it to trace memory-linked molecular programs. doi.org/10.64898/202...
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Alex Schier @schierlab.bsky.social · 17/06/2026
Might cerebellar disinhibition underlie Restless Legs Syndrome symptoms? Will Joo found that loss of the RLS-associated gene meis1b perturbs locomotion in zebrafish by disinhibiting cerebellar output. www.sciencedirect.com/science/arti...
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Tomás Ryan @tjryan.bsky.social · 17/06/2026
Save the date: the 3rd biennial #engramsandensembles conference will be held from May 12 - 14, 2027 at @tcddublin.bsky.social 🪉🧠🌐📈
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Jaime de la Rocha @jrochav.bsky.social · 02/06/2026
Last weeks to register to the superb FENS Satellite about decision making organized by the @barccsyn.bsky.social community in Barcelona. The meeting will be on Sun July 5th, just before the FENS Annual Forum. Check the speakers line up! It is veery nice 😁 barccsyn.org/meetings/sat...
barccsyn.org
BARCCSYN FENS Satellite — BARCCSYN – Barcelona Computational, Cognitive and Systems Neuroscience Community
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Flavio Donato @flaviodonato82.bsky.social · 09/06/2026
Two brain circuits. Same learning problem. Shared learning outcomes. Different dynamical implementations. Our work shows that learning is not a single canonical solution but can emerge through distinct population dynamics shaped by circuit architecture. Excited to share our latest preprint! 🧵1/12
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Flavio Donato @flaviodonato82.bsky.social · 09/06/2026
Two brain circuits. Same learning problem. Shared learning outcomes. Different dynamical implementations. Our work shows that learning is not a single canonical solution but can emerge through distinct population dynamics shaped by circuit architecture. Excited to share our latest preprint! 🧵1/12
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Yue Kris Wu @kriswu.bsky.social · 28/05/2026
Excited to share that our study on how cell-type-specific synaptic scaling mechanisms regulate memory representations in associative learning is now published! www.jneurosci.org/content/earl...
jneurosci.org
Cell-type-specific synaptic scaling mechanisms differentially contribute to associative learning
Excitatory synaptic scaling regulates network dynamics by proportionally adjusting excitatory synaptic strengths after sensory perturbations. During associative learning, blocking excitatory scaling i...
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Tamir Eliav @tamir-eliav.bsky.social · 29/05/2026
🚨 New paper in @nature.com We asked why two hippocampal areas with very different anatomy, CA3 and CA1, often seem to code space so similarly? By recording bats flying up to 200m, we found that the difference was hidden by scale! www.nature.com/articles/s41... 🧵 1/11
nature.com
Sparse-to-dense coding transformation between hippocampal areas CA3 and CA1 - Nature
The hippocampus exhibits a CA3-to-CA1 coding transformation that combines fast learning with an efficient, compressed neural code.
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Timothy O'Leary @timothyoleary.bsky.social · 14/05/2026
Some more Brain-Machine Interface shenanigans: this time we think we found evidence that an animal's agency in a task modulates hippocampal maps of that task. www.biorxiv.org/content/10.6...
biorxiv.org
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Optogenetics Gordon Research Conference @optogrc.bsky.social · 08/05/2026
Join us as we explore where optogenetics is headed next at #OptoGRC2026 ⚡ With Megha Sehgal, Nicolo Accanto, @flaviodonato82.bsky.social, @logangrosenick.bsky.social, @sydneytrask.bsky.social, Hoda Shamsnajafabadi & Susoban Das 💡
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Tallie Z Baram @talliezee.bsky.social · 29/04/2026
Stunning, enduring effects of early-life oxytocin- from neuronal firing to behavior! by Gall & Lynch 🧪🧠 www.nature.com/articles/s41.... @npp-journal.bsky.social @oyiz.bsky.social @julielauterborn.bsky.social @dulaclab.bsky.social @flaviodonato82.bsky.social @svmahler.bsky.social
nature.com
Lasting effects of early-life oxytocin treatment on LTP and episodic memory in a mouse model of Fragile X syndrome - Neuropsychopharmacology
Neuropsychopharmacology - Lasting effects of early-life oxytocin treatment on LTP and episodic memory in a mouse model of Fragile X syndrome
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Kate Jeffery @katejj.bsky.social · 21/04/2026
Job alert! We are seeking a rodent in vivo electrophysiologist to work on coordination between anterior thalamus and hippocampus in rats using Neuropixels. Beautiful Scotland, leading university (Glasgow) and vibrant intellectual setting. Post is 23 months but hopefully extensible. Details here 👇
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Georg Keller @georgkeller.bsky.social · 15/04/2026
For nearly a century, we believed the therapeutic effect of ECT is the seizure. Our latest research suggests we may have been looking at the wrong event. A thread on why cortical spreading depression (CSD) might be the driver of therapeutic benefit. Work led by @therehugolad.bsky.social
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Gisella Vetere @gisellavetere.bsky.social · 11/03/2026
How does the brain build a memory? A common assumption is that the neurons activated during an experience collectively form the memory engram. In our new Nature Neuroscience paper (finally out!), we show that this is not the case. www.nature.com/articles/s41...
nature.com
Deconstruction of a memory engram reveals distinct ensembles recruited at learning - Nature Neuroscience
Pouget et al. identified distinct CA1 neuron ensembles active during specific moments of fear learning and uncovered the core engram essential for memory formation.
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Edvard I Moser @edvardmoser.bsky.social · 11/03/2026
Is spatial navigation innate 🧠? Using #NeuroPixels we show that the #torus 🍩 underlying the #GridCell map exists already on day 10 in rats — before pups open eyes and ears and before they start upright walking. 🧵1:4 👇 www.biorxiv.org/content/10.6...
biorxiv.org
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Carolina Rezaval @crezaval.bsky.social · 13/02/2026
Our new preprint is out! A state-dependent neural circuit resolves approach–avoidance conflicts www.biorxiv.org/content/10.6... Fantastic work led by Devika Bodas, with key contributions from Marine Balcou, and a great collaboration with Lisa Scheunemann Lab, fearuting Şevval Demirci.
biorxiv.org
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Edvard I Moser @edvardmoser.bsky.social · 28/01/2026
The hippocampal map has its own attentional control signal! Our new study reveals that theta #sweeps can be instantly biased towards behaviourally relevant locations. See 📹 in post 4/6 and preprint here 👉 www.biorxiv.org/content/10.6... 🧵(1/6)
biorxiv.org
Attention-like regulation of theta sweeps in the brain's spatial navigation circuit
Spatial attention supports navigation by prioritizing information from selected locations. A candidate neural mechanism is provided by theta-paced sweeps in grid- and place-cell population activity, which sample nearby space in a left-right-alternating pattern coordinated by parasubicular direction signals. During exploration, this alternation promotes uniform spatial coverage, but whether sweeps can be flexibly tuned to locations of particular interest remains unclear. Using large-scale Neuropixels recordings in freely-behaving rats, we show that sweeps and direction signals are rapidly and dynamically modulated: they track moving targets during pursuit, precede orienting responses during immobility, and reverse during backward locomotion — without prior spatial learning. Similar modulation occurs during REM sleep. Canonical head-direction signals remain head-aligned. These findings identify sweeps as a flexible, attention-like mechanism for selectively sampling allocentric cognitive maps. ### Competing Interest Statement The authors have declared no competing interest. European Research Council, Synergy Grant 951319 (EIM) The Research Council of Norway, Centre of Neural Computation 223262 (EIM, MBM), Centre for Algorithms in the Cortex 332640 (EIM, MBM), National Infrastructure grant (NORBRAIN, 295721 and 350201) The Kavli Foundation, https://ror.org/00kztt736 Ministry of Science and Education, Norway (EIM, MBM) Faculty of Medicine and Health Sciences; NTNU, Norway (AZV)
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Nikos Konstantinides @nkonst4.bsky.social · 10/01/2026
I am very happy (and a bit scared) to present to you what we have been working on over the last 4 years. This manuscript is exactly what I dreamt of when I started the lab and I could not be happier and prouder of the outcome!
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Jan Gründemann @jangrundemann.bsky.social · 23/12/2025
New study on axon initial segment plasticity by Chloé Benoit and Dan Ganea. Using a deep brain imaging approach, we find that AIS length changes dynamically during associative learning. Thank you to the wonderful team and collaborators who made this work possible. www.nature.com/articles/s41...
nature.com
Axon initial segment dynamics during associative fear learning - Nature Neuroscience
Benoit, Ganea et al. show that changes in axon initial segment (AIS) length in the prefrontal cortex of mice accompany fear learning and extinction, revealing AIS plasticity as a key feature of neuron...
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Flavio Donato @flaviodonato82.bsky.social · 23/12/2025
Check this amazing resource by @octoscience.bsky.social !! Can’t wait to try it out!!
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Yoav Livneh @yoavlivneh.bsky.social · 12/12/2025
lab preprint! Interopceptive predictions are central to many brain-body interactions theories, but it's unclear if/how they affect bodily physiology. We (fearless Einav Litvak et al) show that insular cortex predictions are essential for glucose homeostasis-THREAD.. www.biorxiv.org/content/10.6...
biorxiv.org
Insular cortex predictions regulate glucose homeostasis
Brain-body interactions are essential for physical and emotional homeostasis. The brain uses information from the external world to predict upcoming bodily changes. This process involves interoceptive...
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University of Basel @unibas.ch · 10/12/2025
From artificial intelligence to memory and from gene regulation to treatments for blindness: four projects at the University of Basel will each receive around EUR 2 million over a five-year period to pave the way for new discoveries. 👉 www.unibas.ch/en/News-Even...
Ivan Dokmanić, Flavio Donato, Claudia Keller Valsecchi, Bence György
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Flavio Donato @flaviodonato82.bsky.social · 09/12/2025
Incredibly excited to share that we've been awarded an ERC Consolidator Grant to reach new depths in our memory research! @erc.europa.eu #ERCCoG @biozentrum.unibas.ch @unibas.ch
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Liset M. de la Prida @lmprida.bsky.social · 07/12/2025
Happy to announce the 2nd Hippocampus Green Meeting 📍 Barcelona, Spain 🗓️ May 11–12, 2026 Organized together with Manu Valero, Lisa Roux and Dan Bendor 🎤 Keynotes: Nachum Ulanovsky & György Buzsáki ‼️ Call for abstracts now open 🔗 hippocampusgreen.net/wp/ #HippocampusGreen
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Nora Newcombe @noranewcombe.bsky.social · 02/11/2025
YES! "to explain all human cognition, we inherently must include development". Beyond the Adult Mind: A Developmental Framework for Predictive Processing in Infancy - Ward - Topics in Cognitive Science - Wiley Online Library onlinelibrary.wiley.com/doi/full/10....
onlinelibrary.wiley.com
Beyond the Adult Mind: A Developmental Framework for Predictive Processing in Infancy
In this paper, we argue that Predictive Processing cannot be a unifying account of cognition until it can explain infant development. We show why development is crucial for understanding human cognit...
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Edvard I Moser @edvardmoser.bsky.social · 25/09/2025
1/5 How does the brain turn the low-dimensional, universal grid cell metric into the rich, diverse codes needed for memory in hippocampal place cells? 🧵 Preprint link 👇 www.biorxiv.org/content/10.1...
biorxiv.org
Functional independence of entorhinal grid cell modules enables remapping in hippocampal place cells
A systems-level understanding of cortical computation requires insight into how neural codes are transformed across distinct brain circuits. In the mammalian cortex, one of the few systems where such ...
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Liset M. de la Prida @lmprida.bsky.social · 17/06/2025
Looking forward to the #FRM25 @fens.org in Oslo! Excited to talk about the multi-laned hippocampus alongside @flaviodonato82.bsky.social and David Dupret. Great science and discussions ahead!
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Flavio Donato @flaviodonato82.bsky.social · 12/06/2025
Super proud PI moment today when my first PhD student Vilde Kveim received the Shepherd price for her PhD work at today’s Biozentrum symposium. So lucky to have started my lab with you, Vilde!! @biozentrum.unibas.ch @biozentrum-phd.bsky.social
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