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Alex Kingston

@alexjkingston.bsky.social
52 followers 209 following 3 posts

Wellcome trust PhD student @scicambridge.bsky.social @imperiallifesci.bsky.social working on tissue mechanics and cell fate

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Reposted by Alex Kingston
epithelial mechanics fan club @epimechfc.bsky.social · 30/09/2026
Hsiao, S., Mukenhirn, M., Werner, C., Honigmann, A., & Krieg, E. (2025). Reconfigurable Microenvironments Uncover Mechano‐Sensing Timescales and Direct Cell Polarity. Advanced Functional Materials, 35(49), e13028. #EpithelialMechanics advanced.onlinelibrary.wiley.com/doi/10.1002/...
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Reposted by Alex Kingston
James Briscoe @jamesbriscoe.bsky.social · 25/09/2026
New work from @spinalorga.bsky.social & co PAX3 doesn't just pattern the dorsal neural tube, it links metabolism to mechanics PAX3 sustains upper glycolysis and mannose-dependent glycosylation, which cluster N-cadherin & strengthens adherens junctions www.biorxiv.org/content/10.6...
biorxiv.org
Transcriptional coupling of metabolism and cell mechanics controls human neuroepithelium morphogenesis
Tissue morphogenesis integrates developmental programs with cell mechanics, yet the mechanisms coupling these processes remain poorly understood. We investigated this link during neuroepithelial morph...
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Reposted by Alex Kingston
Nature @nature.com · 16/09/2026
The experimental strategy overcomes hurdles that have long stymied researchers studying neuropsychiatric illness in lab-grown brain tissue go.nature.com/4ixYQe1
go.nature.com
Human brain cells transplanted into mice in ‘most extensive’ integration ever
Lab-grown organoids wire into mice missing a key part of their brain, offering a new way to test drugs for developmental conditions.
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Reposted by Alex Kingston
Nature Cell Biology @natcellbio.nature.com · 14/09/2026
👋Our September issue's out! Cover: #embryo implantation mechanics 👉Perspective on #ferroptosis 🔬: #mechanobiology #CellDeath #autophagy #chromatin #RNA #mitosis #circadian control #ribosome #brain #ExtracellularVesicles #transcription #MassSpectrometry & more! www.nature.com/ncb/volumes/...
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Reposted by Alex Kingston
bioRxiv Biophysics @biorxiv-biophys.bsky.social · 31/08/2026
MechanoMaST - a multimodal pipeline for spatially registering mechanical and transcriptomic tissue data www.biorxiv.org/content/10.64898/20…
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Reposted by Alex Kingston
PLOS Biology @plosbiology.org · 29/08/2026
Dynamical systems theory can be used for cell state mapping during cell fate decisions. This study by @jamesbriscoe.bsky.social &co presents a Dynamic Landscape Analysis, revealing how morphogen signals orchestrate #cellFate decisions during #neuralTube development. 🧪 #AcademicSky plos.io/4wPoVsn
An expanded detail of the dynamical landscape of cell fate decisions for ventral neural tube progenitors illustrating the circular topology of differentiation trajectories that leads to p3 neurons.
(CC BY 4.0; https://creativecommons.org/licenses/by/4.0/).
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Alex Kingston @alexjkingston.bsky.social · 21/08/2026
Check out our preprint on PreLights!! (my fave website that isn’t PPMS)
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Reposted by Alex Kingston
Stefan Schoenfelder @stefanschoenfelder.bsky.social · 07/08/2026
Very happy to see this story finally out in @natbiotech.nature.com: www.nature.com/articles/s41... Fantastic collaboration with @lancasterlab.bsky.social on how to identify and ‘fix’ differentiation-compromised human pluripotent stem cells. @babrahaminst.bsky.social @mrclmb.ac.uk 🧵 below
nature.com
Reversible epiblast regionalization determines differentiation potential of human pluripotent stem cells - Nature Biotechnology
The differentiation variability of human pluripotent stem cell lines is diagnosed and corrected.
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Reposted by Alex Kingston
bioRxiv Developmental Biology @biorxiv-devbio.bsky.social · 04/08/2026
Initiating mammalian reproduction from a single male genome www.biorxiv.org/content/10.64898/20…
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Reposted by Alex Kingston
Jay Shendure @jshendure.bsky.social · 31/07/2026
Preprint: biorxiv.org/content/10.6... This is the product of many years of effort, and particularly amazing summer teamwork by Qi Yu, Haedong Kim, @seidels.bsky.social @cxqiu.bsky.social and many others from Shendure Lab & SeaHub (a @alleninstitute.org @biohub.org @uwmedicine.bsky.social colab) 2/n
biorxiv.org
In vivo reconstruction of the cell lineage history of a developing mouse with DNA Typewriter, from zygote to late organogenesis
The complete cell lineage of C. elegans, mapped over four decades ago, was tractable because the animal is small, transparent, and lineage invariant. Most animals are none of these, having orders of m...
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Reposted by Alex Kingston
Mattia Serra @mattiaserra.bsky.social · 21/04/2026
📢Preprint: Positional information (PI) and information flows in dynamic tissues. Our mathematical framework quantifies, from data, how the coupled stochastic dynamics of cell positions and properties preserve, degrade and generate PI. @alex-plum.bsky.social www.biorxiv.org/content/10.6...
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Reposted by Alex Kingston
bioRxiv Developmental Biology @biorxiv-devbio.bsky.social · 30/07/2026
Single-cell lineage tracing of human neuromesoderm organoids reveals TBX6-mediated posterior mesoderm fate diversification www.biorxiv.org/content/10.64898/20…
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Reposted by Alex Kingston
Stirling Churchman @stirlingchurchman.bsky.social · 28/07/2026
RNA-seq tells us how much RNA is present in the cell. But to understand gene regulation, we need to easily measure the synthesis and decay rates driving this abundance. We introduce AIR-seq: analog intrinsic recoding sequencing. (1/6) www.biorxiv.org/content/10.6...
biorxiv.org
Analog intrinsic recoding measures RNA dynamics without chemical conversion
Steady-state RNA abundance measurements mask the synthesis and decay rates that shape gene expression. Analog intrinsic recoding sequencing (AIR-seq) repurposes the base-pairing properties of N4-hydro...
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Reposted by Alex Kingston
bioRxiv Developmental Biology @biorxiv-devbio.bsky.social · 28/07/2026
ERK signaling integrates multiple mechanisms to drive cortical evolutionary expansion www.biorxiv.org/content/10.64898/20…
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Reposted by Alex Kingston
Nature @nature.com · 27/07/2026
Nature research paper: Genetic background sets the trajectory of experimental cancer evolution go.nature.com/3RzmnjJ
go.nature.com
Genetic background sets the trajectory of experimental cancer evolution - Nature
Experimentally replaying tumour evolution in divergent mouse strains reveals the importance of interactions between genetic ancestry and acquired cancer-driving mutations in shaping the earliest stages of cancer development.
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Reposted by Alex Kingston
Akankshi Munjal @akankshi.bsky.social · 24/07/2026
Excited to share our latest! www.biorxiv.org/content/10.6... This was a highly collaborative endeavor– the best way to do science. We asked how a developing tissue achieves the right shape despite all the variability along the way. Short answer: Hydrostatic pressure. Read on for the long answer!
3D-rendered confocal image of the embryonic zebrafish inner ear (otic vesicle) showing fluorescently labeled cell membranes. Three translumenal epithelial pillars span the lumen, partitioning it into the three semicircular canals (purple arrow: anterior canal; yellow arrow: posterior canal; white arrow: lateral canal)3D rendering of the segmented otic vesicle lumen at 3 days post-fertilization, showing the three connected fluid-filled compartments corresponding to the anterior, posterior, and lateral semicircular canals. The segmentation shows the characteristic geometry of the canals and the spaces partitioned by the transluminal epithelial pillars.
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Reposted by Alex Kingston
Srinjan Lab @srinjan.bsky.social · 23/07/2026
Proud to share our latest bioRxiv with Lakatos lab @lakatoslab.bsky.social showing how niche-specific mechanotransduction guides human cortical patterning and cell fate acquisition. How does a tissue's mechanical environment shape which cells it makes, and when? 1/n www.biorxiv.org/content/10.6...
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Alex Kingston @alexjkingston.bsky.social · 20/07/2026
Pleased to say that the first half of my PhD project is now out in preprint format! Using cortical organoids to model the mechanical transitions involved in early neurogenesis, we find that nuclear mechanotransduction is a crucial regulator of the timing and outcome of neuronal differentiation:
biorxiv.org
Organoids reveal niche-specific mechanotransduction-guided human cortical patterning and cell fate acquisition
The highly dynamic mechanical environment of the developing cerebral cortex has the potential to encode information vital for neuronal differentiation. Changes in local biophysical properties have bee...
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Reposted by Alex Kingston
bioRxiv Developmental Biology @biorxiv-devbio.bsky.social · 16/07/2026
Organoids reveal niche-specific mechanotransduction-guided human cortical patterning and cell fate acquisition www.biorxiv.org/content/10.64898/20…
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Reposted by Alex Kingston
James McCulloch @jamesimcc.bsky.social · 06/07/2026
Another springtail to find this summer! ☀️ Fab photo from @josscarr.bsky.social of Fasciosminthurus quinquefasciatus from Dorset yesterday. The 1st UK record outside Cornwall, where it was found new to Britain 2 yrs ago! www.researchgate.net/publication/... Can we track its expansion further?
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Reposted by Alex Kingston
James Briscoe @jamesbriscoe.bsky.social · 01/07/2026
New in @dev-journal.bsky.social: how tissue shape tells cells what to become Using human stem-cell neuruloids, we show how that physical boundaries encode positional information that drives cell fate patterning in a model of trunk formation A thread 🧵 journals.biologists.com/dev/article/...
journals.biologists.com
Boundary constraints can determine pattern emergence
Summary: A reaction-diffusion mechanism recapitulates pattern emergence in an in vitro model of neuromesodermal progenitors under a variety of boundary and geometrical perturbations.
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Reposted by Alex Kingston
Cell Reports @cp-cellreports.bsky.social · 04/06/2026
A human corticospinal organoid-slice connectoid model informs enhancer strategies for post-injury axon regrowth
dlvr.it
A human corticospinal organoid-slice connectoid model informs enhancer strategies for post-injury axon regrowth
Gibbons et al. present a human corticospinal organoid slice-based connectoid model, with physically separate but functionally coupled cortical and spinal regions. Allowing cell-type-specific observations, the platform uncovers a developmental maturation-dependent decline in human axon regeneration and a transcriptional program intrinsic to cortical projection neurons that, when targeted, promotes repair post-injury.
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Reposted by Alex Kingston
bioRxivpreprint @biorxivpreprint.bsky.social · 12/06/2026
Mechanics and fate stochasticity shape stem cell distribution in tissues www.biorxiv.org/content/10.64898/20…
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Reposted by Alex Kingston
Bianca Dumitrascu @bimidu.bsky.social · 12/06/2026
How are two embryos alike? As we collect spatio-temporal microscopy data, we want to quantify variability in the timing of key developmental events. Alignment of multiple recordings is a core engineering challenge here and we suggest a solution; read about it: www.biorxiv.org/content/10.6...
biorxiv.org
A quantitative coordinate system for developmental dynamics
Quantitative comparison of morphogenesis across individuals remains a fundamental challenge, as developing embryos vary in shape, orientation and developmental tempo. Moreover, real-time three-dimensi...
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Reposted by Alex Kingston
bioRxiv Developmental Biology @biorxiv-devbio.bsky.social · 08/06/2026
Minimal essential requirements for neural tube self-organisation www.biorxiv.org/content/10.64898/20…
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Reposted by Alex Kingston
bioRxiv Developmental Biology @biorxiv-devbio.bsky.social · 18/05/2026
Interpretable decoding of cell fate from a snapshot of combinatorial signaling www.biorxiv.org/content/10.64898/20…
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Reposted by Alex Kingston
Nature Cell Biology @natcellbio.nature.com · 11/05/2026
☕ @riddhiman.bsky.social et al. use experimentally matched mass-spec and RNA-seq to quantify proteins, phosphosites & transcripts across 4 stages of human & mouse gastruloid development. @jshendure.bsky.social @leastarita.bsky.social @nobuhamazaki.bsky.social @dschweppe.bsky.social bit.ly/4dAYyA1
bit.ly
The proteomic landscape and temporal dynamics of human and mouse gastruloid development - Nature Cell Biology
Garge et al. use experimentally matched mass spectrometry and RNA-sequencing to quantify proteins, phosphosites and transcripts across four key stages of human and mouse gastruloid development.
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Reposted by Alex Kingston
bioRxivpreprint @biorxivpreprint.bsky.social · 11/05/2026
Whole-brain protein profiling using organ-scale multiplexed immunolabeling and image co-registration www.biorxiv.org/content/10.64898/20…
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Reposted by Alex Kingston
Nature @nature.com · 30/04/2026
Red blood cells have been modified to form strong clots that halt any bleeding almost instantly and then promote tissue regeneration go.nature.com/3ONdhP0
go.nature.com
Engineered blood clots stop bleeding in seconds
Red blood cells have been modified to form strong clots that halt any bleeding almost instantly and then promote tissue regeneration.
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Reposted by Alex Kingston
bioRxiv Developmental Biology @biorxiv-devbio.bsky.social · 22/04/2026
Temporal degradation of PRC2 uncovers specific developmental dependencies www.biorxiv.org/content/10.64898/20…
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Reposted by Alex Kingston
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 22/04/2026
Foundation cell segmentation models performance on live microscopy and spatial-omics data www.biorxiv.org/content/10.64898/20…
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Reposted by Alex Kingston
Nature Cell Biology @natcellbio.nature.com · 20/04/2026
☕ @joshifrenster.bsky.social @amartinezarias.bsky.social & co utilize mosaic mouse #gastruloids as a model of cell fitness & competition, identifying a temporal window between primed pluripotency and early gastrulation during which #CellCompetition occurs in mammalian #embryogenesis. bit.ly/4cBmfGK
bit.ly
Mosaic gastruloids reveal a temporal restriction for developmental cell competition - Nature Cell Biology
Frenster et al. utilize mosaic mouse gastruloids as a model of cell fitness and competition, identifying a temporal window between primed pluripotency and early gastrulation during which cell competit...
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Reposted by Alex Kingston
Manuel Irimia @mirimiam.bsky.social · 20/04/2026
Thrilled to present our comparative study on the evolution of zygotic genome activation (ZGA)!! 🥚🧬 Amazing PhD work of @campobes.bsky.social together with @fedemantica.bsky.social and many collaborators! @melisupf.bsky.social @crg.eu. Thread below 1/15 www.biorxiv.org/content/10.6...
biorxiv.org
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Reposted by Alex Kingston
Nature Biotechnology @natbiotech.nature.com · 20/04/2026
Sequencing peptides by reversing translation - @uclchemistry.bsky.social @ucl.ac.uk #NBTNV go.nature.com/48KERmB
go.nature.com
Sequencing peptides by reversing translation - Nature Biotechnology
A new peptide sequencing approach converts amino acids into DNA sequences, which are easily read.
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Reposted by Alex Kingston
bioRxivpreprint @biorxivpreprint.bsky.social · 14/04/2026
Whole organism 3D mapping reveals universal branching topology and biophysical optimization governs vascular and nervous system development www.biorxiv.org/content/10.64898/20…
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Reposted by Alex Kingston
Turlier lab @turlierlab.bsky.social · 12/04/2026
How can we learn tissue mechanics directly from cell patterns and images? In our new preprint, we introduce VertAX, a differentiable vertex-model framework in JAX for simulating epithelia, inferring parameters, and designing target tissue behaviors. shorturl.at/PUzT0 1/5
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