bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 2hCharacterization of artificial riboswitches for Coxsackievirus B3 detection using machine learning www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 2hDEPICT enables sample-centric therapeutic prioritization across evolving and spatially heterogeneous tumor states www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 3hError correction of SARS-CoV-2 genomic sequences using a phylogenetic prior www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 15hDECONVersation: Single Cell Foundation Model-Derived Embeddings for Robust Cell Type Deconvolution of Bulk RNA-seq www.biorxiv.org/content/10.64898/20… 001
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 15h'broadSeq', a benchmarking tool to contrast differential gene expression methods and identify when genomic neighbourhood matters www.biorxiv.org/content/10.64898/20… 010
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 16hA human-in-the-loop approach for faster cell tracking www.biorxiv.org/content/10.64898/20… 010
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 18hScalable localization of clustering instability for spatial transcriptomics www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 18hqPyCR: A qPCR Data Analyzer for Template Quantification and the Detection of Performance Outliers www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 19hProbing Genomic Foundation Models with Splice-Variant Perturbations www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 20hEmpirical Bayes Estimation of Sample-Specific Correlation Networks for Cross-Sectional and Longitudinal Omics Data www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 21hAnti-target chemical-space coverage of Indian medicinal plant phytochemicals www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 21hScalable fold-change estimation from microbial metagenomics www.biorxiv.org/content/10.64898/20… 010
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 09/10/2026When Does a Pathway Score Preserve a Mediated Effect? Aggregation Geometry, Minimax Adequacy, and Gap Inference for High-Dimensional Mediation www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 09/10/2026Cross-cohort Mamography]{Representation-dependent domain adaptation for cross-cohort generalization of mammography diagnostic models www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 09/10/2026Approximate local alignment via chained MEM divergence estimation for detecting horizontal gene transfer www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 09/10/2026drugMR: A multi-omics pipeline for genetically anchored drug-target discovery www.biorxiv.org/content/10.64898/20… 011
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 09/10/2026SpatialOmicsLab: an integrated research environment for AI co-scientists in spatial transcriptomics www.biorxiv.org/content/10.64898/20… 010
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 09/10/2026A Weighted Estimation Approach to Correct for Imperfect Mutation Detection Due to Intra-tumor Heterogeneity in Tumor Sequencing www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 09/10/2026Exploring noise in TCR specificity data through supervised learning www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 09/10/2026CCT2 expression marks a translation-activated state in sporadic ALS motor neurons and is associated with functional decline www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 09/10/2026Expression trajectories in the aging male mouse colon transcriptome www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 09/10/2026Exploration of ligand (un)binding trajectories with Rosetta www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 09/10/2026mzQC: a versatile way to communicate quality information for biological mass spectrometry www.biorxiv.org/content/10.64898/20… 010
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 09/10/2026SIMORGH: Ensemble-Aware Geometric Deep Learning for Apo-State and Cryptic Ligand Binding Site Prediction www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 09/10/2026STAVelo: deciphering spatiotemporal cellular dynamics via spatial RNA velocity inference from spatial transcriptomics data www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 09/10/2026RNA3D-Decoy: A Large-Scale Benchmark Dataset of AI-Generated RNA Structure Models for Quality Assessment www.biorxiv.org/content/10.64898/20… 010
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 09/10/2026COPD Preferentially Disrupts Constitutive Redox Support Relative to Inducible Antioxidant Defense www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 09/10/2026Continuous Integration and Software Quality in Scientific Software: A Large-Scale Empirical Analysis of GitHub Repositories www.biorxiv.org/content/10.64898/20… 010
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 09/10/2026Position-wise Fold-Switch Prediction in Metamorphic Proteins: A Comparison of Handcrafted and Language Model Features www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 09/10/2026Reliable extraction of clinical-trial evidence with provenance, verification, and targeted review www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/2026Machine learning classifies subcellular Golgi morphology from imaging flow cytometry during inflammatory activation: an exploratory study www.biorxiv.org/content/10.64898/20… 010
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/2026Sketching the SRA: experiment-wide similarity search across 4.8 million metagenomes www.biorxiv.org/content/10.64898/20… 0135
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/2026Co-occurrence network multicollinearity artefacts using centered log-ratio transformation www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/20268-Oxoguanine transcriptional miscoding can transiently reproduce PAH-associated premature-stop transcripts www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/2026REFinder: Mining new enzymes from metagenomes www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/2026KENT: Fast Pathogen Screening with NVIDIA Jetson Cluster in Resource-Constrained Areas www.biorxiv.org/content/10.64898/20… 010
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/2026FilAdh: degradation-aware analysis of focal adhesions and actin stress fibers www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/2026CryoCodex: learning discrete structural representations for cryo-EM map post-processing www.biorxiv.org/content/10.64898/20… 021
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/2026FlyAnatoView: Visualization of Drosophila Single-cell RNA-seq Datasets on Anatomographs www.biorxiv.org/content/10.64898/20… 010
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/2026VINTER: a generative vision-language model for annotating and interrogating spatial tissues www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/2026Synthesis-aware generative design in trillion-scale chemical spaces for automated drug discovery www.biorxiv.org/content/10.64898/20… 010
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/2026NomadFlow: unindexed multi-motif scaffolding with independently mobile rigid groups www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/2026Additive-input encoding fails operator-level target-held-out prediction on current Perturb-seq screens www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/2026Evaluating Autonomous LLM Agents Across Molecular Prediction and Optimization Benchmarks www.biorxiv.org/content/10.64898/20… 010
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/2026Evaluation of synthetic data generation for longitudinal 6-year follow-up subclinical cardiovascular disease data using GAN models www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/2026RiboWin: A computational framework to identify non-canonical open reading frames www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/2026Robust ORF Deconvolution from Multiple Ribo-seq Datasets with Group LASSO Penalty www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/2026A strategy for ionic current analysis of nanopore protein readouts www.biorxiv.org/content/10.64898/20… 000
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/2026HapSolo2: GPU-accelerated optimization for removing secondary haplotigs from diploid genome assemblies www.biorxiv.org/content/10.64898/20… 010
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 08/10/2026Quantifying performance inflation from hidden sample dependence in biomedical image classification benchmarks www.biorxiv.org/content/10.64898/20… 000
