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Afroze Chimthanawala

@afrozec.bsky.social
60 followers 201 following 2 posts

Postdoctoral researcher at Kapanidis Lab, Kavli Institute for Nanoscience Discovery | Former Postdoctoral researcher at Saurabh Lab, NYU | PhD at Badrinarayanan Lab, NCBS (TIFR)

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Reposted by Afroze Chimthanawala
Suckjoon Jun’s lab at UCSD @junlab.bsky.social · 28/09/2026
1/5 Do you use GFP to measure protein abundance? Be very careful. Our new bioRxiv preprint shows that, under translation inhibition, fluorescence can stop tracking how much reporter protein is actually there. Please share widely.
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Reposted by Afroze Chimthanawala
Lopes_Lab @lopeslab.bsky.social · 16/09/2026
Thrilled to share a new important study from the lab, published today in @nature.com, showing how cohesin mediates efficient replication fork plasticity and stress response, using its loop extrusion activity to promote 3D contacts on replicating DNA: www.nature.com/articles/s41...
nature.com
Cohesin reshapes replication fork contacts to aid fork slowing and reversal - Nature
Cohesin-mediated loop extrusion limits sister-fork coupling and tethers nearby replication forks under replication stress, promoting fork reversal and slowing fork progression to safeguard genome...
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Reposted by Afroze Chimthanawala
Young Biophysicists Meeting @youngbiophymeet.bsky.social · 11/09/2026
Submission open for the 12th YBM Meeting (deadline - 28th September)! Abstract submission link: forms.gle/UK1fBmzGtLwn...
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Reposted by Afroze Chimthanawala
Jan-Willem Veening @veeninglab.com · 28/08/2026
I hadn't thought about the problem of division site selection in a long time. Really cool to see these new studies shining fresh light on such a fundamental question. Especially checkout this work by @aducret.bsky.social & Christophe Grangeasse: doi.org/10.1038/s415...
doi.org
Local peptidoglycan composition defines division site selection in Streptococcus pneumoniae - Nature Microbiology
Sequential peptidoglycan carboxylase activity of DacA and DacB generates a local peptidoglycan signature that recruits MapZ and establishes the division site at the Streptococcus pneumoniae cell equat...
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Reposted by Afroze Chimthanawala
Susan Schlimpert @s-lab.bsky.social · 25/08/2026
It is happening, and registration is open for the EMBO Workshop: Bacterial and archaeal cell division: diverse mechanisms and models. 20–23 April 2027 | Barga, Italy. Come and join us @awehenkel.bsky.social, @seamusholden.bsky.social, @s-lab.bsky.social ! Deadline: Jan 6, 2027. #Bacdiv27
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Reposted by Afroze Chimthanawala
Tobias Warnecke @tobiaswarnecke.bsky.social · 22/08/2026
Who needs chromatin anyway...? NOT THIS GUY! www.biorxiv.org/content/10.6... 1/n
biorxiv.org
Chromatin is dispensable for bacterial life
Inside cells, DNA is intimately associated with proteins, forming chromatin. The protein constituents of chromatin vary across the tree of life: histones are the principal building blocks of chromatin...
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Reposted by Afroze Chimthanawala
Ákos T Kovács @evolvedbiofilm.bsky.social · 21/08/2026
Bacterial nanotubes extend from a tubeosome organelle to establish an intercellular bridge bioRxiv by @mkguria24.bsky.social et al from Sigal Ben-Yehuda www.biorxiv.org/content/10.6...
biorxiv.org
Bacterial nanotubes extend from a tubeosome organelle to establish an intercellular bridge
Bacterial nanotubes are widespread intercellular membranous bridges mediating molecular exchange among neighboring cells, yet their formation and dynamics remain largely unexplored. By combining live-...
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Reposted by Afroze Chimthanawala
Grainger Lab @graingerlab.bsky.social · 21/08/2026
A new pre-print out - we show that promoters and terminators of transcription are frequently coupled, throughout the bacteria, and this is regulatory. www.biorxiv.org/content/10.6...
biorxiv.org
Widespread coupling of promoters and terminators of transcription in bacteria
Transcription underpins the expression of genetic information and is viewed as a series of independent initiation and termination events. In bacteria, promoters and terminators of transcription are th...
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Reposted by Afroze Chimthanawala
Aisha Syeda @aishasyeda.bsky.social · 16/08/2026
DNA gyrase is an essential enzyme that helps resolve positive supercoils. In vitro estimates indicate that a single gyrase enzyme resolves 1 supercoil/second. So how does it then keep up with replication in living cells that generate ~100 supercoils every second? We think we found why. 🧵
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Reposted by Afroze Chimthanawala
BiologyTechnion @biologytechnion.bsky.social · 16/08/2026
Tunable kinetic destabilization governs RNA polymerase passage through a DNA-bound transcription factor www.biorxiv.org/content/10.6...
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Reposted by Afroze Chimthanawala
Tung Le @tunglejic.bsky.social · 11/08/2026
Now published in JBac. Absolutely great publishing experience!!! Thank you to editors and reviewers.https://journals.asm.org/doi/10.1128/jb.00286-26 Another great one from @tommclean.bsky.social @johninnescentre.bsky.social @hbio-isp.bsky.social
journals.asm.org
TrbA binds and locks a sliding clamp KorB to repress transcription on multi-drug resistance plasmids | Journal of Bacteriology
Precise regulation of gene expression ensures gene products are produced at the right time and in the right amounts. Recent works uncovered a new mechanism of bacterial gene regulation based on a clamp sliding and locking in a multi-drug resistance plasmid, RK2. KorB functions as a CTP-dependent DNA-sliding clamp capable of traveling over a long genomic distance. Sliding KorB is captured and locked in place by a partner protein, KorA, forming a stable complex at target promoters to repress transcription. Here, we show that another RK2 regulator, TrbA, also uses this clamp sliding-locking mechanism, and identify an aromatic interface enabling TrbA-KorB-mediated transcriptional repression. Our findings show how a single sliding clamp integrates multiple partners to build a complex transcriptional regulatory network.
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Reposted by Afroze Chimthanawala
Tominaga K. (tomiken) @pacyc184.bsky.social · 08/08/2026
Structural Maintenance of Chromosomes Complexes in Bacteria | Annual Reviews
annualreviews.org
Structural Maintenance of Chromosomes Complexes in Bacteria
Structural maintenance of chromosomes (SMC) complexes are conserved ATP-driven machines that organize, compact, and segregate genomes in all domains of life. Despite variation in subunit composition and regulation, all SMC complexes share a core structure and mechanism of action. Bacteria possess two major classes of SMC complexes, SMC-ScpAB and MukBEF, which function in chromosome compaction and segregation. In addition, some bacteria contain other SMC complexes or SMC-like systems such as MksBEF, Wadjet, RecN, and SbcC, each with specialized functions. Bacterial SMC complexes coordinate genome maintenance, DNA replication, DNA repair, plasmid defense, and cell physiology. In this review, we discuss the structure and function of these bacterial SMC complexes, highlighting the shared characteristics and unique strategies employed by each.
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Reposted by Afroze Chimthanawala
Massimo (mirror) @rainmaker1973-m.bsky.social · 01/08/2026
Interactive armillary sculpture reveals kaleidoscope flowers. Original post
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Alex Holehouse @alexholehouse.bsky.social · 29/07/2026
Huge congrats to the many authors who over MANY years worked on this (but especially @karaehunt.bsky.social , @trevorbrandt.bsky.social, Karina, @shaharsu.bsky.social and @remenecker.bsky.social. www.nature.com/articles/s41...
nature.com
Rational design of disordered proteins for sequence–function investigation - Nature
GOOSE enables the design and testing of thousands of disordered protein region sequences to reveal distinct sequence-to-function relationships.
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Reposted by Afroze Chimthanawala
bioRxiv Molecular Biology @biorxiv-molbio.bsky.social · 22/07/2026
Replication-coupled search positions MutH for strand incision in DNA mismatch repair www.biorxiv.org/content/10.64898/20…
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Reposted by Afroze Chimthanawala
EMBO @embo.org · 22/07/2026
Delve into different aspects of the #DNAdamageResponse at the EMBO Workshop "#Evolution and diversity of the DNA damage response" in Bengaluru, India, 23–27 February 2027. Deadline: 15 September 2026 meetings.embo.org/event/27-dna-dama… #EMBOdnadamage #EMBOevents 🧪
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Reposted by Afroze Chimthanawala
Séamus Holden 🔬🦠🧫 @seamusholden.bsky.social · 22/07/2026
Jobs: My fantastic membrane biologist colleague Satyajit Mayor (warwick.ac.uk/fac/sci/med/...) has a really exciting single molecule #biophysics PDRA position currently advertised based at @warwickmed.bsky.social warwick-careers.tal.net/vx/lang-en-G...
warwick-careers.tal.net
Research Fellow in Membrane Biophysics (111600-0526) - University of Warwick
Title: Research Fellow in Membrane Biophysics (111600-0526). Application Deadline: . Position Type: Fixed Term
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Reposted by Afroze Chimthanawala
Miloš Tišma @tismaa.bsky.social · 21/07/2026
I just still cannot help myself from looking that these beautiful real-time dynamics videos from @anjbadri.bsky.social lab! thanks to all the authors from @joeloparo.bsky.social / @anjbadri.bsky.social and TJ Ha labs.
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Reposted by Afroze Chimthanawala
Miloš Tišma @tismaa.bsky.social · 21/07/2026
I'm happy to share the first paper from my postdoc work: www.biorxiv.org/content/10.6... How does RecA find one homologous sequence in an entire chromosome -and what turns that encounter into a repair-competent one? We find that DNA topology is the gatekeeper !! 1/10
biorxiv.org
Chromosome topology gates productive RecA homology search
In homologous recombination, DNA repair depends on recombinase filaments finding homologous templates on chromosomes whose topology is continually remodeled by replication and transcription. How dynam...
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Reposted by Afroze Chimthanawala
Luke Lavis @rhodamine110.bsky.social · 17/07/2026
Excited to see this collaboration now in print. Dye chemistry meets AI-designed proteins. Three small, orthogonal tags; lifetime modulation; split versions. Request the free dyes at dyes.janelia.org www.science.org/doi/10.1126/...
science.org
De novo design of orthogonal far-red, orange, and green fluorophore-binding proteins for multiplexed imaging
Fluorescent proteins and small-molecule dyes offer complementary advantages for biological imaging: proteins are amenable to genetic tagging, whereas dyes provide superior brightness and photostabilit...
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Reposted by Afroze Chimthanawala
George O'Toole (he/him/his) @geiselbiofilm.bsky.social · 15/07/2026
New in JB: Grifaldo, Robleto et al. probe the connection between RNA polymerase and the control of motility and chemotaxis, as well as population heterogeneity, for B. subtilis, connecting diverse physiological processes. journals.asm.org/doi/10.1128/... @asm.org #JBacteriol #MicroSky
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Reposted by Afroze Chimthanawala
Schrader Lab @schraderlab.bsky.social · 14/07/2026
New preprint from my lab and Sean Crosson's lab at MSU. We show that BR-bodies in Brucella are linked to regulation of the type IV secretion system and stress tolerance. www.biorxiv.org/content/10.6...
biorxiv.org
BR-bodies link RNA homeostasis to stress tolerance and intracellular fitness in Brucella
Bacterial gene expression depends on the coordinated regulation of RNA synthesis, processing, and decay. The conserved RNA degradosome scaffold, Ribonuclease E (RNase E), assembles into phase-separate...
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Reposted by Afroze Chimthanawala
Kai Kupferschmidt @kakape.bsky.social · 01/07/2026
“It’s just a microscopic water droplet surrounded by a fatty membrane and stuffed with chemicals and snippets of DNA encoding a mere 36 genes. But it’s also arguably the closest researchers have come to building a living cell from scratch.”🧪 My story in @science.org on a fascinating preprint:
science.org
Lab-created ‘SpudCell’ marks ‘stunning’ step toward building life from scratch
A synthetic cell can now grow and divide—but it’s still far from alive
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Reposted by Afroze Chimthanawala
Nitish Dua @nitishdua.bsky.social · 27/06/2026
Really hyped to share our pre-print on mtDNA replication-fission ! @nanigrotjahn.bsky.social (doi: doi.org/10.64898/202...) 🧵with details below ⤵️
doi.org
ATAD3A structurally links mtDNA replication and mitochondrial fission
Mitochondrial function depends on the maintenance of its genome, and disruptions in copy number and distribution are hallmarks of mitochondrial disorders. Mitochondrial DNA (mtDNA) replication is spat...
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Reposted by Afroze Chimthanawala
Ben Engel @cellarchlab.com · 24/06/2026
Beautiful chromatin confetti 🧬🎊 from gently lysed archaea cells. Definitive proof for the in vivo relevance of hypernucleosomes, with more compacted chromatin during stationary phase. This is big for chromatin evolution! Go Sveta & gang! You are trailblazers!! #TeamTomo #ArchaeaSky 👩‍🔬🧪
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Marine Biological Laboratory @mblscience.bsky.social · 22/06/2026
Happy #MicroscopyMonday! This video shows dinoflagellates being expelled from a coral polyp (Astrangia poculata). Imaged by Loretta Roberson, an associate scientist at the MBL’s Bell Center.
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Ákos T Kovács @evolvedbiofilm.bsky.social · 30/05/2026
Growth in confinement promotes Pseudomonas aeruginosa tolerance to antibiotics PNAS from Alex Persat www.pnas.org/doi/10.1073/...
pnas.org
Growth in confinement promotes Pseudomonas aeruginosa tolerance to antibiotics | PNAS
Bacteria often proliferate within confined spaces imposed by host tissues, extracellular matrices, or their own biofilms where cells press against ...
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Reposted by Afroze Chimthanawala
Susan Schlimpert @s-lab.bsky.social · 07/05/2026
Dear PhD students and postdocs — we want to hear about your science firsthand at our annual Early Career Microbiologists Mini-Symposium @johninnescentre.bsky.social (UK) this September. For more information and to apply: www.jic.ac.uk/event/early-...
jic.ac.uk
Early Career Microbiologists Mini-Symposium 2026 | John Innes Centre
The Department of Molecular Microbiology is organising a one and a half day Early- Career Microbiologists Mini-Symposium. The symposium will be held from Tuesday 22nd – Wednesday 23rd September 2026.
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Julia Kamenz @kamenzlab.bsky.social · 28/05/2026
Ever wondered why anaphase onset looks so rapid (but maybe not perfectly synchronous). As it turns out, separase is playing a small numbers game - at least in fission yeast. Thanks to Wendi Williams, @silkehauflab.bsky.social , and everybody involved.
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Cees Dekker @ceesdekker.bsky.social · 28/05/2026
Pretty cool to hold an actual copy of the French translation 'Le journal top secret de Théo' - a childrens book by Corien Oranje and me for whizkids who want to know about stars, dinosaurs, evolution - explaining how science & christian faith harmonize well. fnac.com/a22963810/Co...
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Mahipal Ganji @ganjilab.bsky.social · 28/05/2026
Bacteria don't need signaling cascades to rewire gene silencing. They use DNA 🧬 twist. ➕Overwind → H-NS forms a filament. ➖Underwind → H-NS bridges and silences. 📣Topology is the switch. See our preprint for more details: doi.org/10.64898/202...
H-NS transition between stiffening and bridging modes dictated by DNA superhelicity
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 27/05/2026
Dynamic partitioning shapes the in vivo organization of the E. coli RNA degradosome www.biorxiv.org/content/10.64898/20…
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Nature Plants @natplants.nature.com · 14/10/2024
With a Research Briefing: "Algal pyrenoid protein can condense plant Rubiscos: a step towards boosting carbon fixation in crops" rdcu.be/dWVK1 A protein from Chlorella that drives phase separation of Rubisco, and has the ability to interact with Rubiscos from plants.
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Ákos T Kovács @evolvedbiofilm.bsky.social · 16/05/2026
Premature transcription termination modulates stochastic gene expression in bacteria trp operon in E.coli vs B.subtilis -in Science Advances from Christoph Engl www.science.org/doi/10.1126/...
science.org
Premature transcription termination modulates stochastic gene expression in bacteria
Bacteria tune transcription bursts through early termination, enabling switch-like and gradual adaptation to nutrients.
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Ákos T Kovács @evolvedbiofilm.bsky.social · 15/05/2026
Mfd interacts with RNA polymerase to modulate flagellum-dependent motility, chemotaxis, and population heterogeneity in the stationary phase of Bacillus subtilis in J Bacteriol journals.asm.org/doi/10.1128/...
journals.asm.org
Mfd interacts with RNA polymerase to modulate flagellum-dependent motility, chemotaxis, and population heterogeneity in the stationary phase of Bacillus subtilis | Journal of Bacteriology
The mutation frequency decline (Mfd) enzyme mediates transcription-coupled repair in transcribed genes by directly interacting with RNA polymerase (RNAP) during transcription of coding sequences. Howe...
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Tung Le @tunglejic.bsky.social · 07/05/2026
@biorxiv-microbiol.bsky.social Who knew ParB-CTPase fold can kill!!! A protein fold best known for segregating chromosomes…can be transformed into a potent antibacterial toxin in some plant and animal pathogens. www.biorxiv.org/content/10.6...
biorxiv.org
Repurposing a chromosome segregation ParB-CTPase fold into an ATPase toxin for contact-dependent growth inhibition in plant and animal pathogens
Bacterial competition drives the evolution of antibacterial mechanisms, yet how new activities arise remains poorly understood. A major route to innovation is the reuse of pre-existing genetic systems, whereby conserved protein modules are repurposed in new biological contexts to generate new capabilities. Here, we show that the ParB-CTPase fold, a conserved nucleotide-binding module best known for its role in chromosome segregation, can be functionally repurposed as an antibacterial toxin. We identify ToxB, a ParB-like domain embedded within the polymorphic toxin region of contact-dependent inhibition systems and show that it functions as a potent antibacterial effector. Structural and biochemical analyses reveal that ToxB retains the core architecture of the ParB-CTPase fold but lacks DNA-binding capability and preferentially binds ATP. This shift in nucleotide specificity underpins a distinct mode of action, in which ATP binding and hydrolysis trigger rapid nucleoid compaction, chromosome segregation defects, oxidative stress, cell chaining, and ultimately cell lysis. ToxB also exhibits toxic activity in plant cells, suggesting that it targets conserved cellular processes. Together, these findings provide direct experimental evidence that the ParB-NTPase fold is biologically versatile and can be repurposed for biological roles fundamentally distinct from its ancestral function in DNA segregation. ### Competing Interest Statement The authors have declared no competing interest. Wellcome Trust, https://ror.org/029chgv08, 221776/Z/2/Z, 227755/Z/23/Z Biotechnology and Biological Sciences Research Council, https://ror.org/00cwqg982, BB/X01097X/1 Diamond Light Source, MX32728
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Achilles Kapanidis @achilleskap.bsky.social · 23/04/2026
Excited to share DeepTRACE! A new AI-driven single-molecule tracking method developed by Oliver Pambos (congrats for outstanding work!) in my lab. Flexible, efficient, robust - great for monitoring diffusion/interactions in live bacteria. Thanks also to Jacob Wright! www.nature.com/articles/s42...
nature.com
DeepTRACE brings flexible machine learning to single-molecule track analysis - Communications Biology
DeepTRACE applies machine learning to analyse long single-molecule tracks that capture multistage biological processes, enabling researchers without technical expertise to rapidly train bespoke models...
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bioRxivpreprint @biorxivpreprint.bsky.social · 05/05/2026
Synthetic Biomolecular Condensates as Tunable Microtubule Assembly Hubs www.biorxiv.org/content/10.64898/20…
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Tera Levin @teralevin.bsky.social · 02/05/2026
Bacterial immune proteins have repeatedly evolved to become parts of eukaryotic immunity. But how? Our new preprint uncovers a recent horizontal transfer event & shows how eukaryotes co-opted a toxic bacterial immune protein 🦠🧪🧵 1/
Microscopy image showing yeast cells expressing a fluorescently tagged version of the amoeba TirC protein. TirC forms filaments that span the yeast cells.
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Deepa Rajan, PhD @deeparajan.bsky.social · 23/04/2026
How can a single cell learn without a brain? We explore this in my paper with @wallaceucsf.bsky.social! We discovered that single cells may learn using molecules similar to those that animal brains use to learn, like CaMKII. Cells can also propagate memory states to their progeny!
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@MorieLAB @morielab.bsky.social · 08/04/2026
Tardigrades resist heavy DNA damage by actively repairing such lesions & expressing DNA-protective proteins. Yet, they are not immortal. How & why do they die? @morielab.bsky.social now shows that their Achilles' heel is DNA replication: duplicating your DNA... will kill you doi.org/10.1111/febs...
doi.org
FEBS Press
DNA damage in the tardigrade Hypsibius exemplaris elicits distinct cellular outcomes depending on replication status. While non-replicating cells tolerate genotoxic stress, constitutively replicating...
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Stephan Gruber @gruberlab.bsky.social · 31/03/2026
Last day to register for the SMC meeting 2026!
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Ákos T Kovács @evolvedbiofilm.bsky.social · 20/03/2026
Exploring the energy landscape of bacterial chromosome segregation -in PNAS by Sumitabha Brahmachari et al from José Onuchic www.pnas.org/doi/10.1073/...
pnas.org
Exploring the energy landscape of bacterial chromosome segregation | PNAS
Faithful chromosome segregation during bacterial replication requires global reorganization of the nucleoid, where Structural Maintenance of Chromo...
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STCmicrobeblog @stcmicrobeblog.bsky.social · 11/03/2026
(archaeal) cell divisionists take note 👇 asymmetric inheritance of the CdvA division ring component in 𝘚𝘶𝘭𝘧𝘰𝘭𝘰𝘣𝘶𝘴 (shown by using fusion with MATCA, a new fluorescent protein brightly shining at 60°C)
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Séamus Holden 🔬🦠🧫 @seamusholden.bsky.social · 11/03/2026
Neat paper from Schwille lab. They demonstrate constriction of synthetic vesicles using important components of the bacterial cell division machinery, FtsZ and FtsN. They induce strong constriction of Z-rings in vesicles just by adding the cytoplasmic domain of FtsN www.nature.com/articles/s41...
nature.com
Optimizing spatial organization of FtsZ rings for large-scale constriction in synthetic cells - Nature Communications
Spatially regulated membrane constriction is an important milestone in reconstituting minimal cell division. Here the authors engineer a truncated system where the cytosolic domain of FtsN forms large...
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Jordy F. Botello @jbotello.bsky.social · 10/03/2026
Some molecular machines, like ribosomes, can persist for long periods of time in cells. Could molecular aging of ribosomes shape how proteins are made? In our new preprint we track ribosomes as they age in cells and uncover unexpected effects on translation (1/10) www.biorxiv.org/content/10.6...
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IDPSeminars @idpseminars.bsky.social · 04/03/2026
IDPSeminars is back TOMORROW! Come see @tanjamittag.bsky.social and @xsalvatella1.bsky.social ! Not to be missed!!
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Yves Brun lab @brunlabcaulo.bsky.social · 26/02/2026
🧵 Proud to present a tour de force by postdoc @gregbwhitfield.bsky.social solving the mystery of how bacterial Tad pili can extend and retract with a single motor ATPase. Great collaboration with Lynne Howell, @dr-lori-burrows.bsky.social, @ianyyen.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
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Julie Biteen @juliebiteenlab.bsky.social · 20/02/2026
Xiaofeng combined 2D live-cell single-particle tracking with 3D simulations to specifically measure the bacterial nucleoid accessibility and viscosity! Our preprint describes how these nucleoid properties respond to cellular processes! Code is available too. www.biorxiv.org/content/10.6...
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Nature Communications @natcomms.nature.com · 30/05/2025
The nucleoid of rapidly growing E. coli 🦠 localizes close to the inner membrane & is organized by transcription, translation, & cell geometry @michriscopy.bsky.social @uni-wuerzburg.de @heilemannlab.bsky.social @goetheuni.bsky.social #microbiology
bit.ly
The nucleoid of rapidly growing Escherichia coli localizes close to the inner membrane and is organized by transcription, translation, and cell geometry - Nature Communications
The mechanisms underlying bacterial chromosome configuration are not fully understood. Here, Spahn et al. show that the Escherichia coli nucleoid adopts a condensed, membrane-proximal configuration during rapid growth, with transcription and translation acting as main drivers of nucleoid organization.
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