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Ian Yen

@ianyyen.bsky.social
70 followers 124 following 6 posts

Type IV Pilus | Aspiring e- cryo microscopist | PhD Candidate | UofToronto | P. Lynne Howell lab 🇨🇦🔬🦠

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Reposted by Ian Yen
Structura Biotechnology @structurabio.bsky.social · 29/09/2026
🇨🇦 Last week, we wrapped up “Beyond Consensus Refinements: Advanced Cryo-EM Data Processing with #CryoSPARC” in Toronto! Thank you to all the #cryoEM scientists who joined us, and to @sickkidsto.bsky.social for another great collaboration! We already look forward to the next workshop! Stay tuned!
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Ian Yen @ianyyen.bsky.social · 25/09/2026
I had a great time at this conference last year and now have the pleasure of helping organize the GRS. I would encourage colleagues to apply and spread the word!
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Alex Merz 🇺🇸🇨🇦🇺🇦 @merz.bsky.social · 31/08/2026
Our new paper with @ckellison.bsky.social. is finally out! We identify an ancient and widely conserved mechanism that promotes initiation of fiber polymerization in type IV pili and type II secretion systems.
pnas.org
β-strand addition within tip initiation complexes licenses assembly of diverse type IV filaments | PNAS
PilC/PilY1 proteins are tip-located adhesins of type IV pili (T4P) that are critical for T4P function in diverse behaviors including twitching moti...
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Veesler lab @veeslerlab.bsky.social · 28/04/2026
How are host proteases promoting coronavirus entry into cells? Find out by reading our latest manuscript led by @mattmccallum.bsky.social Brett Case Jack Brown & @youngjunpark.bsky.social in collaboration with @msdiamondlab.bsky.social 1/19 www.nature.com/articles/s41...
nature.com
TMPRSS2-mediated coronavirus spike activation and inhibition - Nature Structural & Molecular Biology
Here, the authors elucidate TMPRSS2 protease recognition of the SARS-CoV-2 spike S2′ cleavage site, revealing the molecular basis of activation of membrane fusion, and show that antibodies recognizing...
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John Rubinstein @johnrubinstein.bsky.social · 28/03/2026
Congratulations on a great PhD defense @ianyyen.bsky.social! I've enjoyed discussing the finer points of cryo-EM with Ian, being on his advisory committee, and having him as an "honorary group member" these past 6 years.
A group photo of Ian with some of his friends from the 20th Floor Molecular Medicine. Everyone but Ian is wearing a tee shirts with a picture of Ian on it.
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Shuaiqi Guo @guo-lab.bsky.social · 25/03/2026
Our work with the Brun lab on the in situ architecture of the Caulobacter crescentus Tad pilus machine is published in mBio. Amazing collaborative effort led by James Iarocci @jamesiarocci.bsky.social
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Lori L. Burrows @dr-lori-burrows.bsky.social · 11/03/2026
New paper alert! Outstanding work by PhD candidate Nathan Roberge, great collab with the Ellison and Maxwell labs. #Pseudomonas #phage DMS3 encodes Aqs1, an inhibitor of #T4P assembly ATPase PilB, but how it binds and leads to loss of function was unknown. @mcmasteriidr.bsky.social
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Yves Brun lab @brunlabcaulo.bsky.social · 26/02/2026
🧵 Proud to present a tour de force by postdoc @gregbwhitfield.bsky.social solving the mystery of how bacterial Tad pili can extend and retract with a single motor ATPase. Great collaboration with Lynne Howell, @dr-lori-burrows.bsky.social, @ianyyen.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
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Anthony Vecchiarelli @cellforganized.bsky.social · 12/12/2025
Just got word that we are a go for the Bacterial Cell Biology and Development GRS and GRC at Southern New Hampshire University! GRS will be on June 5-6, 2027 GRC will be from June 6-11, 2027 Block off your calendars Prokaryotic Cell Biologists! More details to come! Please repost!
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Nature Microbiology @natmicrobiol.nature.com · 18/11/2025
#NewResearch A bile acid-bound structure of toxin TcdB revealed the mechanism of inhibition and guided the design of a synthetic bile acid that alleviated C. difficile infection in mice. #MicroSky 🦠💊 www.nature.com/articles/s41...
nature.com
Structure-guided design of a synthetic bile acid that inhibits Clostridioides difficile TcdB toxin - Nature Microbiology
A bile acid-bound structure of toxin TcdB revealed the mechanism of inhibition and guided the design of a synthetic bile acid that alleviated Clostridioides difficile infection in mice.
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Shuaiqi Guo @guo-lab.bsky.social · 06/11/2025
Great collaboration with @brunlabcaulo.bsky.social for resolving the Tad pilus machine structure by cryo-ET. Beautiful work by graduate students James Iarocci and Ryu Williston in our lab. Preprint:https://www.biorxiv.org/content/10.1101/2025.11.05.686773v1
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Lori L. Burrows @dr-lori-burrows.bsky.social · 13/10/2025
New paper alert! We used our fav technique, genetic suppression, to understand how FimX controls function of the T4P PilB motor ATPase in Pseudomonas aeruginosa. Great collab with the Ellison lab at U Georgia who helped with some fancy microscopy to capture pilus dynamics! doi.org/10.1371/jour...
doi.org
Twitching motility suppressors reveal a role for FimX in type IV pilus extension dynamics
Author summary Type IV pili enable Pseudomonas aeruginosa to attach to surfaces, move (twitch), and form biofilms. Pilus extension is powered by the motor protein PilB, which is regulated by other fac...
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Lori L. Burrows @dr-lori-burrows.bsky.social · 07/10/2025
New paper! Specific PilA and PilY1 sequences make PilU dispensable for T4P-dependent twitching motility in P. aeruginosa. However, most suppressors still had high cAMP levels from loss of PilU, showing that motility and surface sensing responses can be uncoupled.🧐 ⏩ journals.asm.org/doi/10.1128/...
journals.asm.org
Separation of Pseudomonas aeruginosa type IV pilus-dependent twitching motility and surface-sensing responses | mBio
The ability of bacteria to sense and respond to contact with surfaces is important for triggering changes in secondary messenger levels and gene expression, leading to the formation of biofilms and in...
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Reposted by Ian Yen
Science Magazine @science.org · 02/08/2025
Breathing polluted air increases the risk of #osteoporosis, growing evidence shows. Learn more: scim.ag/4lUQBrf #ScienceMagArchives
An infographic showing how smog impacts the human body.
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Structura Biotechnology @structurabio.bsky.social · 23/07/2025
When particles have orientation bias, the resulting maps are often streaked along the missing directions. In this case study, we cover why orientation bias produces anisotropic #cryoEM maps and how you may be able to recover from it! guide.cryosparc.com/processing-d...
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Lori L. Burrows @dr-lori-burrows.bsky.social · 15/07/2025
New paper alert! PhD candidate Nathan Roberge is studying regulation of the #T4P assembly ATPase PilB and identified suppressors of FimX with enhanced motility. Where did they map? Find out here: www.biorxiv.org/content/10.1...
biorxiv.org
Twitching motility suppressors reveal a role for FimX in type IV pilus extension dynamics
In Pseudomonas aeruginosa, retractable protein filaments called type IV pili (T4P) facilitate surface adherence, sensing, and directional movement known as twitching motility. T4P are necessary for th...
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Ian Yen @ianyyen.bsky.social · 22/05/2025
Fantastic collaboration with @ckellison.bsky.social where we demonstrate functional divergence of FimX to regulate type IV pilus positioning along the long axis of Acinetobacter baylyi
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ChimeraX @chimerax.ucsf.edu · 01/05/2025
ChimeraX daily builds can predict small complexes of proteins, nucleic acids and small molecules using Boltz on your Mac, Windows or Linux computer without Nvidia graphics. www.rbvi.ucsf.edu/chimerax/dat...
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Ian Yen @ianyyen.bsky.social · 24/04/2025
Thrilled to announce my first PhD publication in Nature Comms! We determined structures of the Tad pilus ATPase CpaF from Caulobacter. We use these structures to propose how CpaF employs a rotary mechanism of catalysis to drive Tad pilus assembly. www.nature.com/articles/s41...
nature.com
Conformational changes in the motor ATPase CpaF facilitate a rotary mechanism of Tad pilus assembly - Nature Communications
The bacterial Tad pilus extends and retracts using a single bifunctional ATPase CpaF. Here, the authors employ cryo-EM, fluorescent microscopy, and AlphaFold modelling to propose how a rotary mechanis...
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EMBO @embo.org · 26/03/2025
Learn principles of image processing to determine macromolecular structures by #cryoEM: Sign up for EMBO Practical Course on Image processing for cryo-electron microscopy in London, UK, 9–16 September Deadline: 25 April meetings.embo.org/event/25-cry... #EMBOcryoEM #EMBOevents 🧪
meetings.embo.org
Image processing for cryo-electron microscopy
Cryo electron microscopy (cryo EM) is a major structural biology method for studying macromolecular complexes and cellular structures in their native states. Stable high resolution cryo microscopes, …
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Yves Brun lab @brunlabcaulo.bsky.social · 19/02/2025
1/10 🧵 Injecting some science in your feed: Happy to share another chapter in our investigation of bacterial surface sensing. We describe the role of CpaL, a minor pilin-like protein, a key player in surface sensing and adhesion in Caulobacter crescentus. #microsky www.biorxiv.org/content/10.1...
biorxiv.org
Stimulation of the Caulobacter crescentus surface sensing pathway by deletion of a specialized minor pilin-like gene
Bacteria colonize surfaces through complex mechanisms of surface sensing. Pili are dynamic bacterial appendages that play an important role in this process. In Caulobacter crescentus , tension on retr...
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