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🦠Winnie Lee🦠

@winnielee.bsky.social
262 followers 226 following 10 posts

Postdoctoral researcher at Imperial College London | Optimising antimicrobial therapy with the use of AI, modelling and data linkage | Previous research in bacterial genomics & bioinformatics | Small person studying small things | 🇬🇧🇭🇰

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🦠Winnie Lee🦠 @winnielee.bsky.social · 25/04/2026
Thanks to the organising committee for a fantastic conference. I had a great time presenting, learning about major developments and discoveries at #ESCMIDGlobal, and reconnecting with colleagues old and new! Grateful to everyone at @camo-net.bsky.social and Fleming Initiative for all your support!
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Jessica Blair @jessicamablair.bsky.social · 19/03/2026
PhD available with @overtonlab.bsky.social Sara Jabbari and me associated with our BBSRC sLoLa project! www.findaphd.com/phds/project... (UK students only)
findaphd.com
Improving the solvent tolerance of E. coli by understanding the rules of accumulation at University of Birmingham on FindAPhD.com
PhD Project - Improving the solvent tolerance of E. coli by understanding the rules of accumulation at University of Birmingham, listed on FindAPhD.com
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🦠Winnie Lee🦠 @winnielee.bsky.social · 27/03/2026
Happy to share that I will be giving an oral flash presentation at #ESCMIDGlobal2026 to chat about all things sepsis and empiric prescribing strategies! Thank you @escmid.bsky.social for the opportunity and looking forward to seeing everyone in Munich!
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Gavin Thomas (he/him) @gavinhthomas.bsky.social · 17/03/2026
Check out the first of our public lectures on AMR run by the YPS - kicked off by the fantastic Prof. Jess Blair from Birmingham. What is a superbug? @jessicamablair.bsky.social @ypsyork.bsky.social @ybri-uoy.bsky.social - two more in the series coming soon! www.youtube.com/watch?v=sFYs...
youtube.com
What is a Superbug? The global threat of antibiotic resistance
YouTube video by Yorkshire Philosophical Society
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Philip Fowler @philipwfowler.bsky.social · 11/03/2026
Rare opportunity to apply to become a President of Oxford’s newest college! www.nature.com/naturecareer...
nature.com
President - Oxford job with Reuben College, University of Oxford | 12855105
Reuben College, Oxford, invites applications for the position of President, to succeed Professor Lord Lionel Tarassenko, who will step down as the ...
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Craig MacLean @craigmaclean.bsky.social · 23/02/2026
New #AMR pre-print Combining antibiotics with genotoxins can efficiently suppress bacterial in high throughput experimental models. www.biorxiv.org/content/10.6... Fun collaboration with Nassos Typas lab led by @mulkern.bsky.social
biorxiv.org
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John Tregoning @prof-tregoning.bsky.social · 09/03/2026
PhD opportunity in my lab. Working on RSV, genomics, viral escape and evolution www.imperial.ac.uk/infectious-d...
imperial.ac.uk
Funding
Funding is often secured through Wellcome Trust or MRC DTP Fellowships. Further information about this and specific projects studying under the supervision of Departmental supervisors who have obtaine...
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Rich Wilson @richwilson17.bsky.social · 30/01/2026
🩺🦠How well do #OPAT antimicrobials really hit PK-PD targets? Our UK prospective study shows good attainment across agents, while demonstrating the feasibility of #TDM to support #precisiondosing in outpatient infection care doi.org/10.1093/jac/... @tmrawson.bsky.social @mgilchrist123.bsky.social
doi.org
Exploring the opportunity for therapeutic drug monitoring (TDM) and precision dose antimicrobials in an outpatient antimicrobial therapy (OPAT) service: a prospective observational study
AbstractObjectives. Notwithstanding the wide uptake of outpatient antimicrobial therapy (OPAT) in the UK, there is a paucity of data on antimicrobial expos
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GSK @gsk.com · 20/11/2025
80 years after the Nobel Prize for penicillin, antimicrobial resistance is one of societies toughest challenges. GSK, the Fleming Initiative, and the @ineosoxford.bsky.social hosted leaders at the Royal Society of Medicine to advance the global response.
Speakers at the Royal Society of Medicine event
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Andy Edwards @bugsinblood.bsky.social · 29/09/2025
Now published! www.nature.com/articles/s41... Very nice collaboration with Hoogenboom ( @ucl.ac.uk ) and Bonev ( @uniofnottingham.bsky.social ) labs.
nature.com
Polymyxin B lethality requires energy-dependent outer membrane disruption - Nature Microbiology
The antibiotic polymyxin B requires bacterial metabolic activity to cause sufficient damage to the outer membrane to access the inner membrane, which it permeabilizes via an energy-independent mechanism to kill the cell.
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🦠Winnie Lee🦠 @winnielee.bsky.social · 18/06/2025
Incredible week with @camo-net.bsky.social UK and India! Diving into all things AMR surveillance, data systems and stewardship strageties! Grateful to our hosts at Amrita for having us! 🇬🇧🇮🇳 #globalhealth #AMR
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Willem van Schaik @wvschaik.bsky.social · 17/04/2025
Interesting paper Genomic epidemiology and phylodynamics of Acinetobacter baumannii bloodstream isolates in China 'A. baumannii is evolving from a low-virulence, multidrug-resistant pathogen to a more virulent one' www.nature.com/articles/s41...
nature.com
Genomic epidemiology and phylodynamics of Acinetobacter baumannii bloodstream isolates in China - Nature Communications
The genomic epidemiology of Acinetobacter baumannii, which is rising in virulence and multidrug resistance, was explored. This study examined bloodstream infection isolates from Chinese patients in 20...
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Superbugs 🦠🔬🏫🧒🏽 @superbugs.bsky.social · 13/04/2025
And this is what microbiologists do for #Easter. #AgarArt #ScienceIsFun 🦠🧫🔬👨🏻‍🎨🎨🖌️🐣🐇🥚
superbugs.online
Microbial Easter 🐰 — Superbugs - The microbial world in, on and around us
Fun agar plates from across the internet The diversity in microbes is breath-taking. Individual cells may not look like much under the microscope - they are just too tiny. But when they form visible ...
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Eric Topol @erictopol.bsky.social · 26/03/2025
Discovery of a new class of natural antibiotics with a new mode of action to address antimicrobial resistance, a major unmet need @mcmasteruniversity.bsky.social @nature.com www.nature.com/articles/s41...
nature.com
A broad-spectrum lasso peptide antibiotic targeting the bacterial ribosome - Nature
A new lasso peptide antibiotic exhibits broad-spectrum activity against Gram-negative and Gram-positive bacteria by interfering with bacterial protein synthesis, is unaffected by common resistanc...
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Dr Katherine Duncan @kateduncan.bsky.social · 22/03/2025
One week left to apply for this BBSRC funded PhD position in the Duncan lab, cosupervised by @thecopperdoctor.bsky.social and @ruamicro.bsky.social www.findaphd.com/phds/project...
findaphd.com
Antibiotics from the abyss – assessing the impact of deep-sea mining on biodiscovery at Newcastle University on FindAPhD.com
PhD Project - Antibiotics from the abyss – assessing the impact of deep-sea mining on biodiscovery at Newcastle University, listed on FindAPhD.com
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Harry Low’s Lab @lowlab.bsky.social · 28/03/2025
Please RT. Post-doc opportunity alert! 💥 Come join our team (thelowlab.org) at Imperial, London, working on bacterial secretion systems. The position is funded by the Wellcome Trust. For more details and to apply please see www.imperial.ac.uk/jobs/search-...
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Yu Wan 万宇 @wanyuac.bsky.social · 02/03/2025
I am delighted to update that our work presented at the ICID 2024 has been published today: Neonatal intensive care units as a driver and reservoir of invasive infections: an example of the emerging Staphylococcus capitis multidrug-resistant NRCS-A clone www.sciencedirect.com/science/arti...
sciencedirect.com
Neonatal intensive care units as a driver and reservoir of invasive infections: an example of the emerging Staphylococcus capitis multidrug-resistant NRCS-A clone
Healthcare environments have been identified as a significant source of multidrug-resistant bacterial infections, particularly, in vulnerable patients…
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Nature Reviews Microbiology @natrevmicro.nature.com · 20/02/2025
New online! The role of bacterial metabolism in antimicrobial resistance
nature.com
The role of bacterial metabolism in antimicrobial resistance
Nature Reviews Microbiology, Published online: 20 February 2025; doi:10.1038/s41579-025-01155-0In this Review, Ahmad et al. examine how antibiotics influence bacterial metabolism and how metabolism, in turn, affects drug efficacy and the emergence and…
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Nadia Izadi-Pruneyre @nadia-izadi.bsky.social · 09/02/2025
research.pasteur.fr/en/call/call...
research.pasteur.fr
Call for applications 2025 - Creation of new research groups at the Institut Pasteur - Research
The Institut Pasteur launches an international call to recruit new junior research group leaders in the application of cutting-edge transdisciplinary approaches to the exploration of host-microbe, tis...
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Antimicrobial resistance #AMR @antimicrobial.bsky.social · 27/01/2025
McMaster researchers developed the free ESKAPE Model, an AI tool for identifying new antibiotics against resistant pathogens, allowing researchers to screen up to 20,000 chemicals daily. How to access is not yet shared, but stay tuned 😊 brighterworld.mcmaster.ca/articles/esk...
brighterworld.mcmaster.ca
McMaster researchers develop and share free antibiotic discovery tool to fight superbugs
Creators of the ESKAPE Model are putting it in scientists' hands now so they can use the tool to do in a moment what otherwise might take weeks, with the goal of accelerating the discovery of new drug...
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Keith Jolley @kjolley.bsky.social · 02/12/2024
BIGSdb v1.50.0 has been released, introducing support for registering fields from the output of third-party analysis tools and then using these in queries and analyses (image shows querying hicap results in H. influenzae database).
BIGSdb query interface with section marked 'Analysis results' enabled. The dropdown list includes fields that have been registered from the hicap output JSON result: genes_identified, IS1016_hists, and predicted_serotype, which can be searched.
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Jamie Hall @jpjhall.bsky.social · 03/12/2024
🆕Read my short perspective on @daganlab.bsky.social's intriguing @currentbiology.bsky.social paper that examined plasmid-mediated gene mobilisation by comparing plasmid cargoes with chromosomal sequences across almost 2000 isolates, now in Trends in Microbiology 💻💫🧬 #MicroSky
cell.com
Loading and unloading plasmid cargoes
Plasmids are vehicles for horizontal gene transfer between cells, but they also exchange genes with associated chromosomes in a process termed 'intracellular mobility'. I discuss a recent article by K...
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🦠Winnie Lee🦠 @winnielee.bsky.social · 04/12/2024
At ISID 2024 to present work with Nina Zhu & Tim Rawson on using AI to predict acute kidney injury from vancomycin & VPT therapy! Visit poster #1 at 12 PM today! @CAMO_Net1 @HPRUamr #AMR #AIinMedicine Also chat to me about Microbiology Society's Knocking out AMR project 😊
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Willem van Schaik @wvschaik.bsky.social · 12/11/2024
JOB CLAXON! I am recruiting a post-doctoral researcher on a BBSRC-funded project (36 months) on the genetics and functional genomics of vancomycin resistance in enterococci. Further details here: edzz.fa.em3.oraclecloud.com/hcmUI/Candid... Please DM or email me if you want to discuss this post.
edzz.fa.em3.oraclecloud.com
Research Fellow - Department of Microbes, Infections and Microbiomes - 104864 - Grade 7
This exciting BBSRC-funded project aims to mechanistically characterise the fitness costs associated with vancomycin resistance in the Gram-positive opportunistic pathogens Enterococcus faecalis and E...
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Kat Holt @katholt.bsky.social · 27/11/2024
Hot off the press - some light reading on Shigella sonnei! 🧪🧫🧬 With @ksbakes.bsky.social @yekwah.bsky.social @sydneylmiles.bsky.social @sergemostowylab.bsky.social @lshtmamrcentre.bsky.social and a bunch of others not yet on bluesky
rdcu.be/d1EAF
rdcu.be
Shigella sonnei: epidemiology, evolution, pathogenesis, resistance and host interactions
Nature Reviews Microbiology - In this Review, Scott et al. review our current knowledge of Shigella sonnei, highlighting recent insights into this globally disseminated antimicrobial-resistant...
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Jay Hinton @jayhinton.bsky.social · 13/11/2024
Incredible graphic - the myriad of ways that bacteria defend themselves against antibiotics. 14 resistance mechanisms, summarised by Idan Yelin & Roy Kishony in Cell www.sciencedirect.com/science/arti...
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Langridge Lab @langridgelab.bsky.social · 21/11/2024
HERE's our paper revealing phylogenomic variations in #Salmonella Agona that lead toward persistent infection dx.plos.org/10.1371/journal.ppat.1012679 Great job to our @Emmabeansworth.bsky.social, @gemma-langridge.bsky.social, @winnielee.bsky.social & UKHSA's Marie Chattaway & Amina Ismail Ahmed
dx.plos.org
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Souvik Bhattacharyya @souvik-uthealth.bsky.social · 12/11/2024
Hello Blueskis. Here is a starter pack of General Microbiology. It's a small list currently. Please feel free to self-nominate and I will add you. go.bsky.app/QgSQHJ9
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Alasdair Hubbard @dralhubb.bsky.social · 19/11/2024
PhD studentship available. The project is VERY interdisciplinary, combing social science, biophysics and microbiology to understand inequalities of UTIs treatment and replicate them in vitro to help choose the correct antibiotic. Pls share, home students only #AMR #MicroSky tinyurl.com/45d8h54u
tinyurl.com
Health inequalities which impact the treatment of urinary tract infections
Find out about this studentship opportunity on Health inequalities which impact the treatment of urinary tract infections.
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Langridge Lab @langridgelab.bsky.social · 01/11/2024
It's HERE! Our long awaited paper revealing phylogenomic variations in #Salmonella Agona that lead toward persistent infection in @PLOSPathogens t.co/iDY38oiVbJ Great job to our @EmmaBeansworth, @gemma_langridge,@Winni_l08 & @UKHSA's @MarieChattaway & Amina Ismail Ahmed
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Andreas Peschel @andreaspeschel.bsky.social · 18/11/2024
Research, prevention, awareness - Controlling Microbes to Fight Infections
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Emma Waters @emmabeansworth.bsky.social · 19/11/2024
It's HERE! Our long awaited paper revealing phylogenomic variations in #Salmonella Agona that lead to persistent infection in @PLOSPathogens dx.plos.org/10.1371/jour... Thanks Gemma Langridge, UKHSA's, Marie Chattaway & Amina Ismail Ahmed & Winnie Lee Now to the next 3 papers..
dx.plos.org
From acute to persistent infection: revealing phylogenomic variations in Salmonella Agona
Author summary The persistence of non-typhoidal Salmonella following acute gastroenteritis is a significant challenge for public health but the causes that lead to such chronic infections are understu...
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Willem van Schaik @wvschaik.bsky.social · 15/02/2024
Your regular reminder about editorial standards at Frontiers.
A close-up of a figure with AI-generated nonsense text.
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Cluster of Excellence CMFI @cmfi.bsky.social · 18/11/2024
🌍 World Antimicrobial Awareness Week! 🦠 Antimicrobial resistance is a threat to global health. Misuse of antibiotics fuels resistance and makes infections harder to treat. Be part of the solution: Follow medical advice and help spread awareness! #WAAW #AMR #GoBlue #OneHealth youtu.be/_Qy3aTKiVLE
youtu.be
WAAW 2024 - World Antimicrobial Awareness Week
YouTube video by CMFI - Cluster of Excellence
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MicrobesNG @microbesng.bsky.social · 17/07/2024
It was great to catch up with one of our favorite customers @winnielee.bsky.social at #genomescienceUK in Bristol 🥰 #gsuk24 #MicrobialGenomics
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MicrobesNG @microbesng.bsky.social · 17/07/2024
Great talk on the genomic population of bloodstream Klebsiella spp. in Southwest UK Thanks for the shout out @winnielee.bsky.social 🥰 it's always fun to hear what happens to the data we send out 🥳 #gsuk24 #Genomescienceuk #AMR
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Luisa F. Pallares @luisapallares.bsky.social · 25/01/2024
#Postdoc alert! wanna come do some postdoc-ing with us in beatiful Tübingen!? #Evolution & #genomics enthusiasts, we want you! 💻🧬🔬 You don't need to love #Drosophila, but if you do, it is a plus :) pallareslab.org/we-are-hirin...
pallareslab.org
We are hiring! Postdoctoral Position in Evolutionary Genomics
Postdoctoral Position in Evolutionary Genomics The lab “Evolutionary Genomics of Complex Traits” led by Luisa F. Pallares is looking for a postdoctoral researcher to join our team in beautiful Tü...
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Justine Rudkin @scousemicrobe.bsky.social · 22/01/2024
A little over a week left to apply for this PhD position in Glasgow. Come study how Staphylococcus aureus transitions from the nasal to bloodstream niche, and how the microbiome influences colonisation status
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Conor Feehily @sligomicrobe.bsky.social · 17/01/2024
Still time to apply for this PhD. Deadline is January 31st. #microsky
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Séamus Holden 🔬🦠🧫 @seamusholden.bsky.social · 25/01/2024
1 week left to apply for these 4 year post-doc positions in my lab
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Conor Feehily @sligomicrobe.bsky.social · 02/01/2024
En route to Glasgow! Who wants to join me? 🗓️ Reminder that the deadline for the PhD is January 31st. Details below. #microsky 🏴󠁧󠁢󠁳󠁣󠁴󠁿🧫
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Helen McNeil @helenmcneil.bsky.social · 12/01/2024
We are expanding our team again! If you are looking for a bioinformatics post please take a look 🤩
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Séamus Holden 🔬🦠🧫 @seamusholden.bsky.social · 12/01/2024
🚨JOBS🚨🦠🔬 Two 4 year post-docs available in my lab at Warwick. Looking for experts in super-resolution #microscopy, single molecule fluorescence, FRET or protein biochemistry. Visa+NHS fees covered. Salary~£40K. Two exciting team science projects with outstanding collaborators #microsky
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Jamie Hall @jpjhall.bsky.social · 16/01/2024
🔔New preprint! In which we explore the ecological consequences of plasmid-bacterial compensatory evolution using models and experiments. With Rosanna Wright, Jamie Wood, Mike Bottery, @brockhurstlab.bsky.social and others 🧫💫🦠 www.biorxiv.org/content/10.1...
biorxiv.org
Superiority of chromosomal compared to plasmid-encoded compensatory mutations
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
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🦠Winnie Lee🦠 @winnielee.bsky.social · 15/12/2023
First official post on here! Viva done and dusted! Thanks Ed Feil and Alice Halliday for examining, as well as Darryl Hill for chairing! Interesting discussions and awesome experience! Matthew Avison looking very happy here 😊
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Tobias Warnecke @tobiaswarnecke.bsky.social · 05/12/2023
3-year Junior Research Fellowship at Trinity College, Oxford in Biochemistry/Pathology/Biomedical Sciences, broadly defined. Synergy with current researchers at Trinity (incl. myself!) very much encouraged. trinity.ox.ac.uk/vacancies Ideally suited for somebody 1/2
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Willem van Schaik @wvschaik.bsky.social · 28/11/2023
New PhD position in the MRC Doctoral Training Programme for an Oct 2024 start with @milja001.bsky.social and myself as supervisors. The gut phageome as a driver for microbiome dynamics in critically ill patients Scroll down on more.bham.ac.uk/mrc-aim/phd-... for details
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Henrik Strahl @henrikstrahl.bsky.social · 16/11/2023
If you are looking for an AMR-themed PhD project and want to learn cool techniques such as microscopy and chemical genetics, come join my lab at Newcastle University. This project is a close collaboration with Manuel Banzhaf (Newcastle) and Gary Sharples (Durham). www.findaphd.com/phds/project...
findaphd.com
BBSRC NLD Doctoral Training Partnership: Interplay between bacterial multidrug efflux and outer memb...
PhD Project - BBSRC NLD Doctoral Training Partnership: Interplay between bacterial multidrug efflux and outer membrane permeability creates an unexpected vulnerability towards antibiotics at Newcastle...
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Zamin Iqbal @zaminiqbal.bsky.social · 04/10/2023
I'm recruiting PhD students for Oct 24 start at University of Bath. Fully funded for UK students only. If interested in developing data structures/algorithms for bacterial genomics, or exploring plasmid epidemiology, or ML/AI on bacterial/phage geno/pheno data, give me a call!
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