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Sebastian Wenk

@sebwenk.bsky.social
192 followers 267 following 40 posts

Assistant Professor Sustainable and Synthetic Metabolism at the University of Groningen. #C1_Metabolism #Synthetic_Biology #E.coli_and_other_microbes 🇩🇪->🇧🇷->🇫🇷->🇪🇸->🇳🇱

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Reposted by Sebastian Wenk
Timo Rückert @timorckert.bsky.social · 19/09/2026
Excited to share our new @romagnanilab.bsky.social preprint! We use somatic mutations to show how a central principle of adaptive immunity - clonal selection - shapes innate immune memory to viral infection. A huge thanks to all co-authors and collaborators! www.biorxiv.org/content/10.6...
biorxiv.org
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Victor de Lorenzo (CNB, Madrid) @vdlorenzo.bsky.social · 30/07/2026
We know the peer review system is under heavy criticism. But can anyone propose anything better? I just received the reviews of two of our most recent submissions. They were very critical but immensely helpful. The peer review system has many flaws, but don’t throw the baby out with the bathwater 🙄!
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Max Fürst @maxfus.bsky.social · 09/07/2026
Domain swap is a staple in protein engineering. But instead of trial & error, can we predict an ideal crossover w/ comp modeling? Happy to share a wonderful collaboration w/ Jürgen @lassak-lab.bsky.social at my alma mater LMU Munich to convert a protein ligase to an aaRS for β amino acids t.ly/lNpVw
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Sophia Paul @sophia-pa.bsky.social · 08/07/2026
Excited to share my paper! 🥳 Today in #Nature we reveal an 8 MDa Hdr electron bifurcating super-assembly in class I methanogens that couples the first and last steps of hydrogenotrophic methanogenesis. A lineage-specific adaptation to anaerobic niches. www.nature.com/articles/s41...
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Buzz Baum @buzzbaum.bsky.social · 05/07/2026
Dear fellow researchers. I think we need to discuss this: www.newscientist.com/article/2532... While peer review is flawed, and while preprints are a great way to share data before publication, as a community we mustn’t trade rigour for hype. This paper was peer reviewed and rejected.
newscientist.com
What is 'SpudCell'? Arguably the greatest bioengineering feat yet
A prototype cell partly capable of replicating itself has been created using 36 existing bacterial genes, but it's not really a living organism – yet
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Richard Sever @richardsever.bsky.social · 03/07/2026
Last month was another record for bioRxiv submissions. The pandemic surge and lag now clearly in the past and the growth continues. Thanks as ever to all the authors, readers affiliates, funders and amazing internal openRxiv team who make this happen!
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Victor de Lorenzo (CNB, Madrid) @vdlorenzo.bsky.social · 03/07/2026
2/2 IMHO, an earlier (2025) paper by Juan Pérez-Mercader www.pnas.org/doi/epdf/10.... which hardly received any media attention, was comparatively more significant in the way towards synthetic life than the one now publicized without peer-review 🤷‍♂️
pnas.org
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Pablo Ivan Nikel @pabnik.bsky.social · 23/06/2026
PntAB & SthA of #Pseudomonas are a flexible transhydrogenase system, supporting energy balance, acetate assimilation & formate tolerance, impacting redox-intensive & C1 metabolic engineering @michelepartipilo.bsky.social @labnikel.bsky.social @cp-cellsystems.bsky.social www.cell.com/cell-systems...
cell.com
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Victor de Lorenzo (CNB, Madrid) @vdlorenzo.bsky.social · 17/06/2026
We were the *Black SEVATH* band, I wonder why @sevaplasmids.bsky.social … 🤔
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Victor de Lorenzo (CNB, Madrid) @vdlorenzo.bsky.social · 10/06/2026
Back to Segovia for the last retreat of my Lab, along with friends and colleagues from ETH, Univ Sevilla, DTU and Univ Valencia. Great science & amazing discussions in the unique venue of the historical Dominican Convent of Santa Cruz la Real, now @ieuniversity.bsky.social
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Tae Seok Moon @taeseokmoon.bsky.social · 08/06/2026
#SynBYSS Conference in Barcelona begins with Victor de Lorenzo & Ian Paulsen giving amazing plenary talks! @vdlorenzo.bsky.social @marcguellc.bsky.social @jcvi.org
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Victor de Lorenzo (CNB, Madrid) @vdlorenzo.bsky.social · 07/06/2026
Off to Barcelona for the 2nd SynBYSS Conf www.jcvi.org/events/synbyss organized by the one and only @taeseokmoon.bsky.social along with Marc Güell of @upf.edu & other local SynBio colleagues. Ready to take the pulse of the field & learn from many of its luminaries 😀. I will honor Gaudí in my talk 👇
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Roland Hatzenpichler @environmicrobio.bsky.social · 05/06/2026
I am excited to announce that MSU's Thermal Biology Institute, for which I serve as director since July 2025, is now officially the EXTREME BIOLOGY INSTITUTE (EBI)! 🦠 🔬 Thread below but your TLDR: rebranding ourself the EBI will bring in new research teams, now research directions, and new funds.
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Reese Richardson @reeserichardson.bsky.social · 05/06/2026
The Thermo Fisher situation keeps getting worse. We've now collected 450+ problematic images presented as verification data in TF's antibody catalog. This includes: 🖌️ Dozens more images with duplications or painting 🖨️ Hundreds of blots that all share the same background (behold slideshow below)
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Victor de Lorenzo (CNB, Madrid) @vdlorenzo.bsky.social · 22/05/2026
Most productive and enjoyable sortie to Groningen for visiting @sebwenk.bsky.social, @karin555.bsky.social and catching up with friends and colleagues in @rug.nl Exciting discussions, unusually fantastic weather and great hospitality. What else can one ask for! Thank you 🤩!
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Sebastian Wenk @sebwenk.bsky.social · 21/05/2026
Today I had the pleasure of hosting the one and only @vdlorenzo.bsky.social at the University of Groningen (@rug.nl). He gave a thought-provoking lecture on the sub-cellular organisation in P.putida which sparked lively discussions and lasting inspirations. Thank you for the visit Victor 🙏🙏🙏
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Sebastian Wenk @sebwenk.bsky.social · 16/05/2026
My group has a website now. Check it out! www.wenklab.com The sustainable and synthetic metabolism lab at the University of Groningen is engineering microbes to grow on CO2-derived feedstocks to enable a circular bioeconomy.
wenklab.com
Sustainable Synthetic Metabolism Lab, Wenk Lab | Synthetic Biology University Groningen
The Wenk Lab at the University of Groningen engineers synthetic metabolic pathways in microbial hosts to create cell factories for a sustainable bioeconomy.
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Will Shoemaker @shoestrapped.bsky.social · 20/04/2026
Happy to share that I've accepted a CNRS Chaire de Professeur Junior position in computational biology as part of the Génomique Métabolique unit at Genoscope! Looking forward to working with my fellow researchers there as well as with the broader 🇫🇷 research community starting this summer! 🇺🇳/🇮🇹 🔜 🇫🇷
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Victor de Lorenzo (CNB, Madrid) @vdlorenzo.bsky.social · 20/04/2026
Off to RWTH Aachen University @core-rwth.bsky.social for a micro-sabbatical—time to rethink SynBio not as a tool for controlling & dominating nature, but as a means to negotiate with it and help heal the environment—and developing a new narrative re GMOs for bioremediation along the way 🤔
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Matic Kostanjsek @matick.bsky.social · 14/04/2026
The first published article of my PhD. As described by @gerrich.bsky.social, we equipped R. sphaeroides with a MoClo system, characterized genetic elements, and applied a semi-automated approach for rapid strain construction. Such a nice collaboration!
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Patrick van der Wel @pcavanderwel.bsky.social · 14/04/2026
Great presentation by @francesarnold.bsky.social for the Backer lecture this afternoon! Organized by the Backer Foundation (www.backerfoundation.nl), held at the @rug.nl . About evolving an designing novel enzymes. Very cool! (With quite some machine learning and even some DISCO )
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Schuller Jan @schullerjm.bsky.social · 14/04/2026
Happy to present our latest story: the BCRII complex with the Boll and @cellarchlab.com . Months of processing by @rnfr2d2.bsky.social. Also @tomaspascoa.bsky.social and @tamb-o.bsky.social managed an in-situ tour de force. And Lena Appel did amazing biochemistry. This story has it all. Enjoy it.
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Gerrich @gerrich.bsky.social · 14/04/2026
Publication alert 🚨 A new Golden Gate MoClo toolbox for Rhodobacter sphaeroides is out and it's built on Zymo-Parts! @matick.bsky.social & Antoine took our framework and added many new genetic tools and a new automation angle. This adaptation is a dream come true for me. 1/10 🧪🧵
pubs.acs.org
Rhodo-Box: A Synthetic Biology Toolbox to Facilitate Metabolic Engineering of Rhodobacter sphaeroides
Rhodobacter sphaeroides is a purple nonsulfur alphaproteobacterium with a highly versatile metabolism. This microorganism holds promise as a chassis for sustainable biomanufacturing of numerous chemicals. Yet, its potential is constrained by a lack of standardized, well-characterized genetic elements to tune gene expression such as transcriptional promoters and ribosome binding sites (RBSs). In this study, we present Rhodo-Box, a comprehensive toolkit for R. sphaeroides created by adapting and extending the Zymo-Parts modular cloning framework. Using Rhodo-Box we built and characterized: (a) three broad-host origins of replication (pBBR1, RK2 and RSF1010), (b) a set of 13 promoters, (c) four inducible expression systems (NahR-PsalTTC, LacI-PlacT7A1_O3O4, VanR-PvanCC, and XylS-Pm), (d) 11 RBSs, and (e) four transcriptional terminators. Furthermore, we present a semiautomated, user-friendly cloning approach which enables rapid construction of R. sphaeroides strains. The Rhodo-Box toolkit equips R. sphaeroides with a standardized, automation-compatible collection of parts and workflows essential for efficient design–build–test–learn cycles and advanced metabolic engineering.
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Matthias Heinemann @matthiasheinemann.bsky.social · 10/04/2026
🧵 Our new paper is out today in molecularcell.bsky.social! After 7 years of a truly intriguing discovery journey, we can finally share what controls how molecules move inside living E. coli cells. Spoiler: it's not what the field thought. A thread 👇 📄 doi.org/10.1016/j.molcel.2026.03.018
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Melanie Blokesch @mblokesch.bsky.social · 10/04/2026
Excited to share our new paper out today in @science.org 🎉 We show that HGT via natural competence drives diversification of chromosomal integrons in V. cholerae 🤩 Below a 🧵 on key findings incl. background on natural competence in V. cholerae 1/ #microsky #phagesky www.science.org/doi/10.1126/...
science.org
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Max Fürst @maxfus.bsky.social · 08/04/2026
Torn between amusement and frustration that @alignbio.bsky.social cancels PETase tournament halfway through. Cryptic mail suggests they hugely underestimated how difficult measuring enzyme activity in high throughput really is. Better pulling the plug than lousy execution, but.. poor planning?
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Oded Rechavi @odedrechavi.bsky.social · 30/03/2026
Do we grow wiser as we age? I spent 15+ years chasing glam journals, wasting time and energy (and frustrating my team and co-authors). I don’t want to wake up at 70 and realize my life went into convincing a few editors my work was trendy enough. Enough. I’ll try to be smarter.
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Marla Feller @mfeller.bsky.social · 28/03/2026
mad neuroscientists marching in Berkeley
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Richard Sever @richardsever.bsky.social · 20/03/2026
“Authors [&] reviewers tell us that they have had a more constructive experience…choosing eLife not because of our impact factor, but because of our process” 👆 eLife comtinues to provoke debate but this is perhaps the most important point elifesciences.org/articles/110...
elifesciences.org
Scientific Publishing: Rethinking how research is reviewed and published
Taking a radical new approach to the publication process resulted in eLife losing its impact factor, but authors, reviewers, editors and funders support the journal and its efforts to reform scientifi...
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Johannes Rebelein @rebeleinlab.bsky.social · 06/03/2026
A childhood dream has come true – I was appointed Full Professor for Sustainable Biotechnology at the University of Düsseldorf @hhu.de : tinyurl.com/f43s74hp and as Director of the Institute for Molecular Enzyme Technology (IMET, www.iet.uni-duesseldorf.de/en/) at FZ Jülich @fz-juelich.de .
tinyurl.com
Mathematisch-Naturwissenschaftliche Fakultät
Heute ernannte Rektorin Prof. Dr. Anja Steinbeck den Biotechnologen Dr. Johannes Rebelein zum W3-Professor für Nachhaltige Biotechnologie. Rebelein wird damit auch Direktor des Instituts für Molekular...
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Thijs J. G. Ettema 🦠🔬🇳🇱🇸🇪🇪🇺 @ettema.bsky.social · 05/01/2026
I have a postdoc position in metagenomic exploration available in my group. Candidates with documented experience in phylo & metagenomics and preferably with petabase-scale data mining and GLM workflows are encouraged to apply. Come join us! 🧬🦠💻 Please repost Apply here: www.wur.nl/en/vacancy/p...
wur.nl
Postdoctoral researcher Phylogenomics and metagenomics
Are you just as excited as we are about the fascinating world of microorganisms? Do you want to contribute to exploring and genomically characterize novel prokaryotic lineages? Do you have a PhD degre...
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Victor de Lorenzo (CNB, Madrid) @vdlorenzo.bsky.social · 03/01/2026
Time to leverage SynBio for tacking environmental pollution. But releasing bioengineered microorganisms still raises alarms. A new narrative is badly needed: bacteria for bioremediation are not alien intrusions but laboratory-trained extensions of life’s creativity link.springer.com/10.1038/s443...
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Kat Abughazaleh @katmabu.bsky.social · 03/01/2026
Unconstitutional force. Civilians dead. Congress bypassed. Oil interests front and center. We’ve seen this movie before and it ends in blood. But we don’t have to do it again.
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Itai Yanai @itaiyanai.bsky.social · 19/12/2025
Doing a PhD is - at heart - one long discussion with your mentor. The discussion changes over time - with unexpected turns and ups & downs - but through it all is a pair of people discussing a topic endlessly to make sense of it. PhD students: choose someone you like to talk to!
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Mike Jetten @msmjetten.bsky.social · 09/12/2025
Congratulations 🎉🎉🎉 to our esteemed #microbiology @ribesresearch.bsky.social colleague @cuwelte.bsky.social on being the proud recipient of a prestigious @erc.europa.eu consolidator grant on electroANME. All the best with your research. Very well deserved :) erc.europa.eu/news-events/...
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Sophien Kamoun @kamounlab.bsky.social · 30/11/2025
Let’s run the numbers on this new @ERC_Research “ERC-Plus” scheme. About 30 grants to be awarded, and we’re told “better apply for a regular grant, your chances are 30× higher.” www.researchprofessionalnews.com/rr-news-euro...
researchprofessionalnews.com
ERC’s new €7m Plus Grants open to researchers at any career stage - Research Professional News
European Research Council president describes scheme as part attempt to lure US talent
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Indra Roux @indraroux.bsky.social · 26/11/2025
Excited to share our latest research in @natmicrobiol.nature.com . We uncover hundreds of inhibitory interactions between common chemical pollutants and human gut bacteria. A thread🧵 (1/10) #microbiomesky #microsky @kiranrpatil.bsky.social lab @mrc-tu.bsky.social www.nature.com/articles/s41...
nature.com
Industrial and agricultural chemicals exhibit antimicrobial activity against human gut bacteria in vitro - Nature Microbiology
Screening of 1,076 compounds reveals 168 chemical pollutants with inhibitory effects on gut bacteria and genetic screens indicate commonality between pollutant and antibiotic resistance.
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Nico Claassens @nicoc-micsynmet.bsky.social · 25/11/2025
Newest preprint from our lab: a new family of promising synthetic CO2 fixation cycles that may outcompete the Calvin cycle and that Vittorio Rainaldi realized to a great extent in E. coli! Up to 11 heterologous enzymes in a cascade supporting CO2 fixation & growth! www.biorxiv.org/content/10.1...
biorxiv.org
Modular in vivo engineering of the reductive methylaspartate cycles for synthetic CO2 fixation
Biological carbon fixation is currently limited to seven naturally occurring pathways. Synthetic carbon fixation pathways have the potential to surpass aerobic natural pathways in efficiency, but none...
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Vivek Mutalik @vivekmutalik.bsky.social · 19/11/2025
Hmmm This work has so many implications on literature 😳😬 Fluorescein-based dyes are not valid reporters of oxidative stress in bacteria, and conclusions based on their use must be reconsidered | PNAS www.pnas.org/doi/10.1073/...
pnas.org
Fluorescein-based dyes are not valid reporters of oxidative stress in bacteria, and conclusions based on their use must be reconsidered | PNAS
Dihydrodichlorofluorescein derivatives have been employed as reporters of intracellular reactive oxygen species (ROS) in innumerable studies. Their...
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c0nc0rdance @c0nc0rdance.bsky.social · 17/11/2025
Prashant Singh in the lab of Tina Iverson at Vanderbilt published this image of the bacterial 🦠flagellar motor, a detailed molecular model made possibly by CryoEM 🔬. The similarity to mechanical motors are strong enough we can use terms like stator, rotor, rod & gearing to describe it.
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Rebecca Brückmann @historleans.bsky.social · 14/11/2025
Sixty-five years ago today, four first-graders desegregated New Orleans's public schools: Ruby Bridges at William Frantz Elementary School, and Leona Tate, Tessie Provost, and Gail Etienne at McDonogh 19 Elementary School. They faced violent mobs and threats to their lives. They were 6 years old. 🗃
Black and white photograph of six-year-old Ruby Bridges, wearing a dark dress and white cardigan and carrying a School bag, accompanied by three FBI agents in dark suits.
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Harris Wang @harriswang.bsky.social · 13/11/2025
Very excited to share our latest work in Science on metagenomic editing (MetaEdit) of the gut microbiome in vivo & directly modifying unculturable immune-modulatory SFB bug in the small intestine. 🦠🧬🛠️ www.science.org/doi/10.1126/...
science.org
Metagenomic editing of commensal bacteria in vivo using CRISPR-associated transposases
Although metagenomic sequencing has revealed a rich microbial biodiversity in the mammalian gut, methods to genetically alter specific species in the microbiome are highly limited. Here, we introduce ...
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Alex Crits-Christoph @acritschristoph.bsky.social · 12/11/2025
Very happy to share our recent work @cultivarium.bsky.social on genetic tools for Ideonella sakaiensis, a (Betaproteo-)bacterium that degrades PET plastic. We identified a plasmid vector for the strain and generated a large RB-TnSeq library, screening for genes impacting plastic degradation.
Figure 2. PET screen results and RB-TnSeq gene fitness results
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Tae Seok Moon @taeseokmoon.bsky.social · 25/10/2025
Prof. Hamilton Smith at J. Craig Venter Institute, a Nobel laureate for discovering type II restriction enzymes, passed away last night. @jcvi.org @nobelprize.bsky.social A huge loss in Science, but his legacy will be remembered. www.jcvi.org/about/hamilt...
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Oded Rechavi @odedrechavi.bsky.social · 24/10/2025
Such an honor! Can’t wait to visit Brno next week, the place I’ve been teaching about in Genetics course for years but never visited (I feel like I know the garden and the monastery from what I read).
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Sebastian Wenk @sebwenk.bsky.social · 24/10/2025
🔥🔥🔥 Friday Evening, Paper Out, Feierabend 🔥🔥🔥 When evolution and enzyme engineering team up, they can convince microbes to assimilate sustainable carbon substrates preparing them for a life in a circular bioeconomy. doi.org/10.1016/j.ym...
doi.org
Redirecting
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Oded Rechavi @odedrechavi.bsky.social · 21/10/2025
Unlike the heart attack of getting a “Decision” email, it’s such a good feeling to get a “Your review is ready” email from qed :)
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Karolinska Institutet @ki.se · 06/10/2025
The 2025 #NobelPrize in Physiology or Medicine has been awarded to Mary E. Brunkow, Fred Ramsdell and Shimon Sakaguchi for their groundbreaking discoveries concerning peripheral immune tolerance that prevents the immune system from harming the body 🧪 www.nobelprize.org/prizes/medic...
Photo: Cecilia Odlind
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Doudna Lab @doudna-lab.bsky.social · 02/10/2025
"Jane Goodall showed us what a life in science could look like: rigorous discovery paired with fierce advocacy for what you study. She gave the world six decades of groundbreaking research on chimpanzees and their habitats, then turned that knowledge into a global movement for conservation." (1/2)
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Victor de Lorenzo (CNB, Madrid) @vdlorenzo.bsky.social · 23/09/2025
Once upon a time Desk Editors quietly fixed minor issues in accepted papers to ensure format compliance. Now, even the smallest formatting slip sends a ms back to the authors for trivial corrections. Is this really about maintaining standards—or just saving salaries of those used to handle this 🤔?
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