iiinova — where your digital self keeps evolving

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Loïc A. Royer 💻🔬🧪 @loicaroyer.bsky.social · 06/10/2026

🏁 That's a wrap! The @biohub.org Cell Tracking machine learning challenge on @kaggle.com is over: 4,478 participants, 3,947 teams, 120 countries, 95,438 submissions, tracking every cell of zebrafish embryos. 🧪🔬🧵 kaggle.com/competition... #microscopy

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trevor manz @manzt.sh · 28/09/2026

Building bridges between open-source projects is a big part of why I joined @marimo.io. I got to know the @prefix.dev folks through @scipyconf.bsky.social, and worked together to make computational research easier to reproduce and share. Special thanks to @julianhofer.eu and Ruben Arts!

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Philadelphia Phillies @notphillies.bsky.social · 27/09/2026

PUNCHED OUR TICKET! #RingTheBell

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Loïc A. Royer 💻🔬🧪 @loicaroyer.bsky.social · 23/09/2026

What if any dataset, any size, any number of dimensions, opened in a browser tab from a link? 🔬🧪💻 Luxar is out today: write it in Python, share it as a link, explore it in any browser. Open source. 🧵 @biohub.org Preprint: doi.org/10.5281/zen... Code: github.com/royerlab/luxar

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Peter Sobolewski @psobolewskiphd.bsky.social · 18/09/2026

Great time at the Yardgoats-Fightins game!! Great crowd once the rain cleared out! Lot of talent on the field! #GoPhils Crossposted with @openvibe.social

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Vittorio Saggiomo @vsaggiomo.bsky.social · 12/09/2026

And now (and tomorrow) at the maker days in Eindhoven, representing the Open Source Hardware Netherlands

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Agustin Corbat @acorbat.bsky.social · 09/09/2026

I’m so proud and grateful after our **Taller de Fundamentos en Análisis de Bioimágenes (Formación de Formadores)**. Participants grew a lot in fundamentals and reproducibility (macros, Git, Pixi), and also learned how to teach these skills to others. Zenodo: doi.org/10.5281/zeno...

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jerome mutterer @jmutterer.bsky.social · 28/08/2026

I've made a video about Fig_Space, the next version of FigureJ. It has nice new features, I hope you like it. youtu.be/bTKcXN4p-JM

youtu.be

FigSpace Fiji plugin demo

YouTube video by jerome mutterer

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Sarah Langs @slangsonsports.bsky.social · 29/08/2026

wheeeeeee!

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napari @napari.org · 26/08/2026

🚨🚨🚨 napari 0.9.0 is out! 🚨🚨🚨 This is a huge release for us and for our community, with over 30 people contributing new features, improvements, and bug fixes in the 6 weeks since 0.8.0! Release notes here: napari.org/stable/relea... and some highlights in the thread below! 👇

napari.org

napari 0.9.0

Tue, Aug 25, 2026 We’re happy to announce the release of napari 0.9.0! napari is a fast, interactive, multi-dimensional image viewer for Python. It’s designed for browsing, annotating, and analyzing l...

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Sarah Langs @slangsonsports.bsky.social · 23/08/2026

wheeeeeee!

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Jaime Rodríguez-Guerra @jaimergp.dev · 21/08/2026

CEP 48, which brings conditionals and extras to your @conda.org dependencies, is now accepted! This means you will soon be able to type things like `typing-extensions[when='python<=3.10']` and `scipy[extras=test]` 🚀 github.com/conda/ceps/b...

github.com

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The Onion @theonion.com · 13/08/2026

Marlins Jumbotron Displays Message Saying Free Trial Of ABS System Has Ended

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Clarence Mah @clarencemah.me · 12/08/2026

Come check out cool demos with @marimo.io (reactive Python notebooks!) I’ll be doing a small demo at the next community call aug 25 on spatial omics. deets: luma.com/13c69h7x I'm also a new marimo ambassador! do reach out for event collabs in San Diego or Boston👋

luma.com

marimo Community Call! · Luma

Hear directly from the developers of marimo at our Q3 community call! We'll share out some exciting new updates (hint: marimoHub 👀), as well as introduce you…

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trevor manz @manzt.sh · 03/08/2026

pixi 0.76 can now run standalone python scripts in isolated, on-demand environments. dependencies live inline via PEP 723, like uv supports, but pixi can layer on conda and system dependencies too. fun to build this with @prefix.dev folks. coming to a @marimo.io notebook near you SOON.

Screenshot of a standalone Python script declaring Rich and the system package FFmpeg as inline dependencies, then running in an isolated environment with pixi run --script.

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Sara McArdle @saramcardle.bsky.social · 29/07/2026

2 more days to submit an abstract to the QBI Multiplexing conference! Come to beautiful San Diego to discuss all things multiplex immunofluorescence. Registration is still open for those who want to attend but not speak.

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Joël Lemière @joellemiere.bsky.social · 27/07/2026

New preprint! How does a cell "know" how big to make its nucleus? This has puzzled biologists since the 1800’s. We show the answer is physics: colloid osmotic pressure. 🧵1/5

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Christine Nangle @nanglish.bsky.social · 24/07/2026

HOLY MOLY

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Kevin Terretaz @kwolbachia.bsky.social · 17/07/2026

New favorite way to color code microscopy data: this is a real 3D confocal image of an unidentified larvae stained for actin (muscles fibers here). Looks like a watercolor painting! #microscopy #ImageJ #FluorescenceFriday #microscopyMonday

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Simon F. Nørrelykke @simonfn.bsky.social · 14/07/2026

New resource for teaching and learning BioImage Analysis, long in the making, from @tischi.bsky.social and friends, incl. @carpentries.carpentries.org. With roots in the material developed for NEUBIAS workshops.

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Sarah Langs @slangsonsports.bsky.social · 24/06/2026

wheeeeee!

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Peter Sobolewski @psobolewskiphd.bsky.social · 24/06/2026

Holy cow what a couple innings!! Bonkers! #GoPhils

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Sara McArdle @saramcardle.bsky.social · 15/06/2026

Announcing a Multiplex Image Analysis and Computational Pathology workshop through the Quantitative BioImaging Society Talks on cell segmentation and phenotyping, data normalization, spatial analysis, and more! Hosted by @lji.org in San Diego, CA, Sept. 15-16 quantitativebioimaging.com/miacp2026/

quantitativebioimaging.com

Multiplex Image Analysis & Computational Pathology - QBI Society

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Christophe 🔬 Leterrier @christlet.bsky.social · 16/06/2026

This is the kind of things PhD student Louis can do with @ekatrukha.bsky.social's CurveMorph: following protein movement whithin growing axons in his stunning 80-hour movies

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Image Cooperative @image.coop · 16/06/2026

Keeping track of OME-Zarr support across the ecosystem isn't always easy. Over the past few weeks, we've been speaking with stakeholders about experiences, successes, and remaining gaps. Here is our snapshot of where things stand and where effort may be most valuable next: image.coop/blog/posts/2...

image.coop

OME-Zarr Pulse Check: Spec, Tooling, and Community – Image Cooperative

Feedback and insights from chatting to the community and analysing ecosystem data over the last six weeks.

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Peter Sobolewski @psobolewskiphd.bsky.social · 07/06/2026

After the game came the rain! But then today was spectacular, but alas we were on our way back home after brunch at Reading Terminal Market.

Rainy view down Broadstreet towards City Hall in Philadelphia. Construction is visible on the left edge and lights are reflecting the puddles.

Sunny view of the Philadelphia skyline from a high vantage point. City Hall dominates in the left-center of the frame, with the tower of the Masonic Lodge below and to the right. In the background to the right, are Two and One Liberty.

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Peter Sobolewski @psobolewskiphd.bsky.social · 07/06/2026

Fun time at the ballpark yesterday, even if the Phils didn't manage to pull out a W. #GoPhils

View walking east on Pattison Ave, from across the street, of Citizen's Bank Park. Sky is a mix of blue and clouds and there are fans wearing Phillies gear in front of the ballpark.

View almost directly towards 3rd base from the first-base side stands of Citizens Bank Park. The Phillies are on defense and the pitcher, Andrew Painter, waits to deliver a pitch. The full 3rd base side grand stand and light stanchions are in view, as is the foul pole and part of the scoreboard. The sky has some clouds but everything is very bright with sun.

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SciPy Conference 2026 @scipyconf.bsky.social · 03/06/2026

🔬 Tutorial Spotlight: Build custom image analysis tools without starting from scratch. Tim shows you napari's power for microscopy, satellite data, and everything between 🛰️ Extend, visualize, annotate like a pro! #SciPy2026 🔗 scipy2026.scipy.org

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Needhi Bhalla 💅🏽 @needhibhalla.bsky.social · 31/05/2026

Okay here it is: my mom's Punjabi curry recipe. It's super flexible and can be modified for almost anything, which I'll point out. Reposted from twitter in the before times

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Joel Lüthi @joelluethi.bsky.social · 27/05/2026

I'm happy to announce the summer 2026 Open Bioimaging Practices meetings schedule. Before the summer holidays, we have 2 exciting meetings planned to learn about all things OME-Zarr.

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napari @napari.org · 22/05/2026

🎉 Announcing the naPLari hackathon in Kraków, Poland 🇵🇱, July 24–29 2026, after EuroSciPy! Hack on napari, join deep dives, meet the team. All experience levels welcome! 📝 Register by July 1: napari.typeform.com/naplari-hack #napari #ScientificPython #OpenSource #EuroSciPy #BioImageAnalysis

napari.typeform.com

naPLari Hackathon

Questionnaire for the napari hackathon in Krakow, Poland, July 24-29th, 2026.

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Chelsea Parlett @chelseaparlett.bsky.social · 20/05/2026

No matter how it improves in the future , I will never feel the same level of fondness for matplotlib as I feel, deep in my bones, for ggplot😍🥰

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Philadelphia Phillies @notphillies.bsky.social · 16/05/2026

A CAREER-HIGH 13 STRIKEOUTS FOR CRISTOPHER SÁNCHEZ!

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SciPy Conference 2026 @scipyconf.bsky.social · 10/05/2026

📣 If you’re at #PyConUS2026 next week, catch Inessa Pawson and @juanitagomezr.bsky.social at the Community Showcase on Sunday with flyers and stickers for #SciPy2026! 🙌 If you have questions about the conference or just want to connect with the community, this is your chance 🎉

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L.-C. Campeau @drlcsquare.bsky.social · 08/05/2026

A milestone day for our team with the publication of our work on biocatalytic cascades for macrocyclic peptide manufacturing. This establishes a new beachhead in the synthesis of this important new modality for the industry! #MerckChemistry

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Image Cooperative @image.coop · 06/05/2026

Member Eric Perlman takes the stage at @embl.org to announce our launch as an international worker co-op for #OSS scientific imaging software. First task supported by @biohub.org is accelerating #OMEZarr towards a 1.0 alpha early 2027. Stay tuned! image.coop #GIDE2026 @gideproject.bsky.social

A screenshot of Eric's title slide, saying "The role of COOPeration in global imaging. Eric Perlman. Member, Image Cooperative" in Atkinson Hyperlegible font in black on white. The footer is a subtle pink-to-green bar with the hexagonal ball as a separator. The text in the footer says "Image Cooperative Ltd."

A photo of Eric behind the mic at EMBL with the first slide as described in the other image being shown by the projector.

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Erick Ratamero @erickratamero.com · 05/05/2026

The Journal of Open Source Software (JOSS) is looking for a new Editor-in-Chief! This is a volunteer position (as everything else at JOSS), but a great chance to steer one of the coolest things in the academic publishing realm. blog.joss.theoj.org/2026/05/call...

blog.joss.theoj.org

JOSS is seeking a new Editor-in-Chief | Journal of Open Source Software Blog

Blog for the Journal of Open Source Software • <a href='https://joss.theoj.org'>https://joss.theoj.org</a>

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Eva de la Serna @sciencedoodles.bsky.social · 04/05/2026

This course also pairs nicely with @jcellsci.bsky.social -@focalplane.bsky.social training grant funding, which has an application window open until May 8th! Funding Info: www.biologists.com/grants/jcs-f...

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 28/04/2026

Kiya Govek from The Jackson Laboratory gave the inspiring opening lecture at the #OME2026 meeting, bringing us the community contributor perspective based on her online community survey. Next up: An Update from the OME Ecosystem

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Beth Cimini 🔬💻📊 @bethcimini.bsky.social · 24/04/2026

DEADLINE Extended - you now have until Monday, May 4th! May your workshop be with all of us. :)

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Peter Sobolewski @psobolewskiphd.bsky.social · 24/04/2026

As someone who’s on the hosting public stuff side of things, we’ve seen a surge of bot traffic that disregards robots.txt of late. As a result we’ve also put more stuff in front of our stuff and use captcha. Sorry about the inconvenience, but there aren’t great alternatives right now.

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Richard Sever @richardsever.bsky.social · 21/04/2026

Maybe journals aren’t the root cause of problems in academia just a symptom…

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dsarizzle @dsaraiya.bsky.social · 21/04/2026

One, two… #flyers

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Panos Oikonomou @eigenp.bsky.social · 18/04/2026

1/ 🔬🧑‍💻 Tired of going back and forth between GUIs and code for your 3D image analysis needs? Would you like to keep your focus in one place (notebook), without sacrificing interactivity? Here’s a tool that can help!

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Christophe 🔬 Leterrier @christlet.bsky.social · 13/04/2026

Make your own PDMS+micromirror device for single-objective light-sheet SMLM: www.biorxiv.org/content/10.6...

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