Reposted by Simon F. NørrelykkeFlorian Jug @florianjug.bsky.social · 09/09/2026Here we are, #BIC 2026 at @eccv.bsky.social is kicking off! Is this really the 11th time we’re doing this! 🥜 See full program here: bioimagecomputing.com 0215
Reposted by Simon F. NørrelykkeJean-Yves Tinevez @jytinevez.bsky.social · 03/09/2026New version of #Mastodon-SC, the Fiji plugin to track and lineage cells in gigantic movies! What is Mastodon? 👉 in the preprint linked to the quote post What's new? 👇liveimagetrackingtools.orggeff 23818
Reposted by Simon F. NørrelykkeGaëlle Letort @gaellel.bsky.social · 27/03/2026I'm happy to present our new tool, EpiCure, a napari plugin to ease correction of segmentation and tracking of epithelia movies, developed in @devstempasteur.bsky.social 310036
Reposted by Simon F. NørrelykkeJuan Nunez-Iglesias @jni.fosstodon.org.ap.brid.gy · 02/09/2026Job alert! This would be right up my alley which means it might be up *your* alley if you follow me: Software Engineer (Data Specialist) at the Australian National University's Centre for Advanced Microscopy: au.seek.com/job/94226839 #GetFediHired 065
Reposted by Simon F. NørrelykkeJoel Lüthi @joelluethi.bsky.social · 19/08/2026Join the Open Bioimaging Practices Meetup all about OME-Zarr viewers on Monday, August 24th, 4pm CEST. Learn about ViZarr, napari & VolE & hear user stories on how they handle OME-Zarrs. More info here: www.biovisioncenter.uzh.ch/en/events/Up... 0118
Reposted by Simon F. Nørrelykkenapari @napari.fosstodon.org.ap.brid.gy · 31/07/2026RE: fosstodon.org/@napari/1166165047810… And it's a wrap! The hackathon was a fantastic success! 🥳 You can look forward to a longer post about all we did, and one of our biggest releases yet in 0.9.0! Huge thanks to all the participants 🤩, and we hope to see you at the next one! 0144
Reposted by Simon F. NørrelykkeConstantin Pape @cppape.bsky.social · 16/07/2026Segmenting individual cells in microscopy is much easier these days thanks to foundation models. Can we use these models for other tasks, such as cell classification? We investigate in our latest work, finding big improvements for object and pixel classification compared to classical approaches. 1197
Simon F. Nørrelykke @simonfn.bsky.social · 14/07/2026New resource for teaching and learning BioImage Analysis, long in the making, from @tischi.bsky.social and friends, incl. @carpentries.carpentries.org. With roots in the material developed for NEUBIAS workshops. 053
Reposted by Simon F. NørrelykkeLoïc A. Royer 💻🔬🧪 @loicaroyer.bsky.social · 29/06/20261/ 🧬🔬 How does one cell become an entire animal? We can now film it in 3D 🐟, but turning those movies into accurate cell tracks is brutally hard. Enter our new #Kaggle challenge: $60K prize pool, to help crack 3D+time cell tracking at scale! 🧵👇 www.kaggle.com/competitions... @biohub.org 17941
Reposted by Simon F. NørrelykkeEMBL-EBI Training @training.ebi.embl.org · 30/06/2026Introducing our new collection on imaging data management, designed to introduce researchers to the key concepts, standards, and community best practices for managing imaging data throughout the research lifecycle: www.ebi.ac.uk/training/onl... #Bioimaging #DataManagement #FAIR #OpenScience 0105
Reposted by Simon F. NørrelykkeConstantin Pape @cppape.bsky.social · 30/06/2026Want to learn about the latest trends and developments in bioimage analysis? Join us for the GLOBIAS workshop in Dortmund this November! I will be hosting a session on foundation models / AI. www.globias.org/activities/g...globias.orgGloBIAS2026 Workshop DortmundGloBIAS 2026 Bioimage Analysts' Workshop Registration is open! Register with this link! 10-13 November, 2026 - Tuesday to Friday Leibniz-Institut für Analytische Wissenschaften – ISAS – e. V. (https... 01510
Reposted by Simon F. NørrelykkeRita Strack @ritastrack.bsky.social · 17/06/2026If you love imaging metadata, do I have something for you -- Search, organize, aggregate and share image data with BioFile Finder (BFF) | Nature Methods share.google/9UxsAcpaWhbu...share.googleSearch, organize, aggregate and share image data with BioFile Finder (BFF) - Nature MethodsNature Methods - Search, organize, aggregate and share image data with BioFile Finder (BFF) 05317
Reposted by Simon F. Nørrelykkeepflimaging.bsky.social @epflimaging.bsky.social · 11/06/2026📸 🚞 A successful summerschool is not only about exploring cutting-edge imaging methods but also about creating memorable experiences. Short mountain excursion with breathtaking views over Lake Geneva . #EPFLImaging #EPFLImagingSummerschool @simonfn.bsky.social @jules-vanaret.bsky.social 011
Reposted by Simon F. Nørrelykkeepflimaging.bsky.social @epflimaging.bsky.social · 09/06/2026💻🔬☀️ Our 6th Imaging Summerschool has officially started! Welcome to our motivated group of PhD students from a wide range of disciplines. Beautiful environment=perfect setting for learning and new connections. #EPFLImaging #EPFLImagingSummerschool @simonfn.bsky.social @jules-vanaret.bsky.social 011
Reposted by Simon F. NørrelykkeVirginie Uhlmann @virginieuhlmann.bsky.social · 01/06/2026📢📢 We are hiring a Bioimage Analyst at the BioVisionCenter! 📢📢 Join our collaboration with the Flow Cytometry Facility and contribute back to the international efforts on open standards for bioimaging data! More information here, reach out if you have any question: jobs.uzh.ch/job-vacancie...jobs.uzh.chUZH: Bioimage AnalystThe University of Zurich is the largest university in Switzerland and one of the most prominent in Europe. For research purposes the Biovision Center and Flow Cytometry Facility offer services to supp... 13428
Reposted by Simon F. Nørrelykkeepflimaging.bsky.social @epflimaging.bsky.social · 07/05/2026Proud to have contributed to this exciting work on programmable metamaterials led by Flexlab at EPFL, Universiteit Leiden and AMOLF. Our team helped design a spline-based computer vision approach to track beam evolution during rotation. 📖 lnkd.in/eP-8RVFq 012
Simon F. Nørrelykke @simonfn.bsky.social · 06/05/2026The SwissBIAS Annual Meeting is taking place on June 3rd in Bern. Registration deadline: Friday, May 15th, so make sure to secure your spot now! We look forward to seeing you all there for a fantastic day of science, networking, and inspiration. @swissbias.bsky.social tinyurl.com/SwissBIAS2026eventbrite.comSwissBIAS annual meeting 2026It is the time of the year to make veterans meet new members, discuss to foster feedback on existing activities and promote new initiatives. 095
Simon F. Nørrelykke @simonfn.bsky.social · 01/05/2026Very glad to see this out in Nature Cell Biology. A genuinely rewarding collaboration. We contributed some image analysis and spatial statistics via @antoineruzette.bsky.social in the @hms-iac.bsky.social. Super strong work by @nina-kozlova.bsky.social and a large, impressive team. rdcu.be/fgsjvrdcu.beCancer-associated fibroblasts regulate DNA repair in pancreatic cancer through NDRG1-mediated R-loop processingNature Cell Biology - Kozlova et al. report a functional role for NDRG1 in regulating R-loops and DNA repair, thereby linking cancer-associated fibroblast-derived extracellular matrix to... 031
Reposted by Simon F. Nørrelykkeepflimaging.bsky.social @epflimaging.bsky.social · 28/04/2026Wrapping up our 4-day microcredential on imaging in the age of IA with Formation Continue UNIL-EPFL 👏 Special thanks to the speakers and industry experts who contributed to making this course both practical and impactful. Looking forward to seeing how these new skills will be applied. 021
Reposted by Simon F. NørrelykkeDamian Dalle Nogare @damiandn.bsky.social · 28/04/2026Roughly two weeks (until May 15th) left to apply and join our team! Bioimage Analyst: careers.humantechnopole.it/job/Bioimage... Rsearch Software Engineer: careers.humantechnopole.it/job/Research...careers.humantechnopole.itFondazione Human Technopole - Viale Rita Levi-Montalcini, 1 - Area MIND - 20157 Milano Italy - C.F. 97821360159 - PEC: htechnopole@pec.fondazioneht.it 044
Reposted by Simon F. Nørrelykkeepflimaging.bsky.social @epflimaging.bsky.social · 01/04/2026👩💻🔬 First part of the image analysis continuing education program for industry organized by @foco-unil-epfl.bsky.social and the Center for Imaging ✔️ Great energy, hands-on learning, and inspiring discussions Thanks to all participants 🙌🏼 Looking forward to what’s next! #ImageAnalysis 011
Reposted by Simon F. NørrelykkeJan Funke @janfunkey.bsky.social · 05/03/2026We opened 4 PhD positions at @humantechnopole.bsky.social together with Polimi (see 👇). My lab offers a PhD project on "Computational Morphogenesis": use state-of-the-art machine learning methods together with realistic simulations to build digital twins of developing tissue. Apply by March 26. 12112
Reposted by Simon F. NørrelykkeGuillaume Jacquemet @guijacquemet.bsky.social · 09/01/2026I am looking for two postdocs to join our lab - One (bio)image analyst - One cell biologist interested to work on lymphatics! The positions will open soon, be in touch! 02231
Reposted by Simon F. NørrelykkeFlorian Jug @florianjug.bsky.social · 28/12/2025🚨 Alarm!!! 🚨 AI/ML course for microscopy image analysis!!! 🧐 In 2026 at Janelia (@hhmijanelia.bsky.social), no tuition, housing and meals provided! Isn’t that borderline unbelievable?!? 20 students, ~14 TAs and lecturers 🗓️ June 4-18 2026 ✍️ Jan 15 2026 ✍️ 🔁 pls!! www.janelia.org/you-janelia/...janelia.orgDeep Learning for Microscopy Image AnalysisTopics The following will be covered extensively during lectures, exercises, and project work: Image denoising and restoration (fully supervised and self-supervised) Image translation (e.g., 07962
Reposted by Simon F. NørrelykkeJan Funke @janfunkey.bsky.social · 17/11/2025We moved the AI@MBL course "Deep Learning for Microscopy Image Analysis" to HHMI Janelia (@hhmijanelia.bsky.social). Join us for two weeks of intense lectures, exercise, and hands-on project work! Course dates: June 4-18 2026 Application by: January 15 2026 www.janelia.org/you-janelia/...janelia.orgDeep Learning for Microscopy Image AnalysisTopics The following will be covered extensively during lectures, exercises, and project work: Image denoising and restoration (fully supervised and self-supervised) Image translation (e.g., 1189
Reposted by Simon F. NørrelykkeJean-Yves Tinevez @jytinevez.bsky.social · 07/10/2025Job alert! We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? See also on the forum: forum.image.sc/t/research-e...forum.image.scResearch engineer in Bioimage Analysis for the researchers of the inIdEx FORMULAHi all We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? The position is in the Instit... 26380
Reposted by Simon F. NørrelykkeIgnacio Arganda-Carreras @iarganda.eurosky.social · 30/09/2025📣 We’re hiring, please RT! Fully funded 4-year PhD position in our CVPD group at @informatikaehu.bsky.social! Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬 📅 Applications open Oct 6 (deadline: ~Oct 27) 📍 San Sebastian, Spain. 👉 cvpd.github.io/post/2025-09...cvpd.github.io📢 Open 4-year PhD Position in Deep Learning for Bioimage Analysis! | CVPD Research groupThe Computer Vision and Pattern Discovery (CVPD) group at the University of the Basque Country (UPV/EHU) is offering a fully funded 4-year PhD position within the recently awarded project TOSBI: Towar... 23228
Reposted by Simon F. NørrelykkeWolfgang Huber @wkhuber.bsky.social · 29/09/2025Do you like theoretical biology, mathematical&conceptual modelling and want to apply yourself to cutting-edge research at all levels of biology, from molecules to ecosystems? Come to EMBL! Scope includes physics-based models, emergence, statistics, ML/AI embl.wd103.myworkdayjobs.com/en-US/EMBL/j... 04535
Reposted by Simon F. NørrelykkeFlorian Jug @florianjug.bsky.social · 12/09/2025🚨 Wow, that really sounds like an amazing opportunity… If I were a bit younger, I would start preparing my application already… 😮 www.scilifelab.se/news/ready-t...scilifelab.seReady to shape the future of AI in life science?The next call for DDLS Fellows is opening soon, offering an outstanding opportunity for ambitious young researchers to establish their own internationally competitive research groups. This round has a... 1135
Reposted by Simon F. NørrelykkeGuillaume Jacquemet @guijacquemet.bsky.social · 10/09/2025Come and work with us 5-year position available for a University Researcher in Bioimaging 1.11.2025-31.12.2030 abo.rekrytointi.com/paikat/index...abo.rekrytointi.comUniversity Researcher in Bioimaging / Universitetsforskare med inriktning bioimaging, 1.11.2025-31.12.2030 03538
Reposted by Simon F. NørrelykkeEva de la Serna @sciencedoodles.bsky.social · 29/07/2025Check out our amazing #bobiac2025 cohort! Was a joy to teach this group! Thanks @bioimagingna.bsky.social for generously supporting this 6 week bioimage analysis w/Python course! 063
Reposted by Simon F. NørrelykkeHMS Image Analysis Collaboratory @hms-iac.bsky.social · 14/07/2025Day 1 of #bobiac2025 🐍 The day started strong with @talley.codes speaking about the Python ecosystem and uv. Students then gave short talks about their research (#coolscience). It was then time to code in Python with @sciencedoodles.bsky.social! 074
Simon F. Nørrelykke @simonfn.bsky.social · 14/07/2025First day of #bobiac2025. Six days of intensive Python based #BioImageAnalysis. Intro by @fedegasparoli.bsky.social - "This will be a long week, but it will change your life". iac.hms.harvard.edu/bobiac/2025/ 1204
Reposted by Simon F. NørrelykkeSten Linnarsson @sten.linnarsson.org · 25/06/2025A major KI initiative to recruit new assistant professors with outstanding proposals in all areas of medicine, biomedicine and public health. We offer an amazing research environment, great colleagues and generous startup packages. Check it out and get working on your applications! (repost please!) 2116109
Reposted by Simon F. NørrelykkeGuillaume Jacquemet @guijacquemet.bsky.social · 23/06/2025Are you looking for a postdoc? I will be looking for 2-4 people after the summer to join the lab !! Do not hesitate to reach out and disseminate !! 07087
Reposted by Simon F. NørrelykkeFlorian Jug @florianjug.bsky.social · 09/06/2025Come and work with us! Super exciting and relevant projects! Become an #AI pro and do something positive for the 🌍! 👩🎓 🧑🎓 If you know someone who might be interested… please repost and/or forward this! 🙏 11412
Reposted by Simon F. NørrelykkeHMS Image Analysis Collaboratory @hms-iac.bsky.social · 30/05/2025‼️3 days left to apply to the Boston Bioimage Analysis Course (BoBiAC)! 💻 Get started w/Python & learn to analyze fluorescence microscopy images — no programming experience required! Fee waivers available! 🗓️ Apply by June 1st! 🌐 iac.hms.harvard.edu/bobiac/2025/ 044
Reposted by Simon F. NørrelykkeGloBIAS @globias.bsky.social · 15/05/2025Deadlines extended - you can still register for the GloBIAS conference! We have extended most deadlines. Please check our webpage: tinyurl.com/mr3kx5a5! Looking forward to welcoming you to Kobe, for training, developing and discussing a broad range of BIA topics! 089
Simon F. Nørrelykke @simonfn.bsky.social · 08/05/2025Thanks to generous support from @bioimagingna.bsky.social we now have even more fee-waivers for our workshop. No funds, but want to learn? Apply below. 020
Reposted by Simon F. NørrelykkeBeth Cimini 🔬💻📊 @bethcimini.bsky.social · 01/05/2025BIG NEWS - for the first time ever, we're running a Bioimage Analysis Beginnings Bootcamp. Learn #bioimageanalysis from awesome folks, and gain familiarity with some new tools as well as how to pick the right tool in the first place. Aug 4th-8th - apply here (soon!) forms.gle/d2fCXsrWHVP8... 06441
Reposted by Simon F. NørrelykkeHMS Image Analysis Collaboratory @hms-iac.bsky.social · 22/04/2025‼BREAKING‼ We’ve secured new funding for the Boston Bioimage Analysis Course (BoBiAC) this July at Harvard Med School! Course fees down 37%, with fee waivers for academic applicants, for an intensive hands-on intro to bioimage analysis with Python! Apply by June 1st! iac.hms.harvard.edu/bobiac/2025 01912
Simon F. Nørrelykke @simonfn.bsky.social · 15/04/2025Please join in-person if you are nearby, or by Zoom if not. 031
Reposted by Simon F. NørrelykkeMarco Dalla Vecchia @marcodv.bsky.social · 09/04/2025In the past 2 days, we had the great pleasure to host an in-person workshop at @istaresearch.bsky.social with the collaboration of @globias.bsky.social, @carpentries.carpentries.org and @istaustria-iof.bsky.social. We wanted to create a go-to course for image analysis in Python. Info in the thread! 12510
Reposted by Simon F. NørrelykkeRita Strack @ritastrack.bsky.social · 10/04/2025Your yearly reminder to acknowledge the core facilities you use and their staff scientists in your papers. These scientists are a crucial part of the scientific ecosystem and to continue to exist they need tangible credit for their work. Plus their associated expertise adds credibility to your work. 7485165
Reposted by Simon F. NørrelykkeJoanna Pylvänäinen @jwpylvanainen.bsky.social · 08/04/2025We wrote an opinion with simple, practical advice for building data exploration workflows in quantitative cell biology with @guijacquemet.bsky.social and @hanna09.bsky.social . I hope you find it useful! 02510
Reposted by Simon F. NørrelykkeBeth Cimini 🔬💻📊 @bethcimini.bsky.social · 07/04/2025Delighted to announce that @erinweisbart.bsky.social and I have teamed up to create a new bioimage analysis video podcast called Ask Erin/Dear Beth - you can check it out at the link below! It will highlight common challenges in #bioimageanalysis, as well as our favorite solutions to them. (1/x)youtube.comAsk Erin, Dear BethOn Ask Erin/Dear Beth, bioimage analysis experts Beth Cimini and Erin Weisbart, of the Imaging Platform at the Broad Institute of MIT and Harvard, answer your image analysis questions! Whether it’s ab... 15630
Simon F. Nørrelykke @simonfn.bsky.social · 08/04/2025www.globias.org/activities/u...globias.orgUpdate the Data Carpentries Bioimage Analysis with Python CurriculumData Carpentry BioImage Analysis Curriculum - update with Python Join us to update the Data Carpentry Bioimage Analysis Curriculum with Python! The participant list has been finalised, more informat... 062
Reposted by Simon F. NørrelykkeGloBIAS @globias.bsky.social · 08/04/2025Another in-person event from #GloBIAS Together with #Data Carpentry. Thanks to the GloBIAS volunteers at ISTA for organising and hosting us! #BioImageAnalysis #Python 093
Reposted by Simon F. NørrelykkeJean-Yves Tinevez @jytinevez.bsky.social · 31/03/2025Preprint (update) alert! F-BIAS: Towards a distributed national core facility for Bioimage Analysis. (arxiv.org/abs/2409.15009) 0/ In this paper we discuss our experience in federating ourselves and delivering bioimage analysis services to the scientific community in France. 👇 a short threadarxiv.orgF-BIAS: Towards a distributed national core facility for Bioimage Analysis. 33518
Reposted by Simon F. NørrelykkeFlorian Jug @florianjug.bsky.social · 28/03/2025Now that looks like a great new course to check out! More python 🐍 heavy than other courses I know… which is great to have! 👍 Check it out, sign up, learn!!! 🤩 094