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Agustin Corbat

@acorbat.bsky.social
527 followers 958 following 63 posts

Physicist, image analyst and 🔬 | Automation and teaching fan #Python #Pi | #bioimage #analyst at @biif_sweden

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Agustin Corbat @acorbat.bsky.social · 28/09/2026
English below Si necesitas ayuda con tu analisis de Bioimagenes, no dudes en ponerte en contacto! Podemos hacer el esfuerzo de bajar la barrera idiomatica si es una de las cosas que te limita. Not sure how to build or assess if your bioimage analysis is good? Do not hesitate in asking for help!
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Agustin Corbat @acorbat.bsky.social · 22/09/2026
Organizing meaningful mentorship events for young scientists shouldn't mean starting from scratch. 💡 We published a flexible, open-access guide on Zenodo for hosting interactive, small-cohort student–researcher encounters: 🔗 doi.org/10.5281/zeno...
doi.org
Event Planning Guide: Regional Student–Researcher Encounters & Academic Mobility Outreach
This proposal provides a comprehensive organizational framework for hosting an interactive, small-cohort networking encounter between students and regional researchers. It is intended as a flexible ad...
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Agustin Corbat @acorbat.bsky.social · 09/09/2026
I’m so proud and grateful after our **Taller de Fundamentos en Análisis de Bioimágenes (Formación de Formadores)**. Participants grew a lot in fundamentals and reproducibility (macros, Git, Pixi), and also learned how to teach these skills to others. Zenodo: doi.org/10.5281/zeno...
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Marina B. Cuenca @cuencam15.bsky.social · 31/07/2026
Sad to be saying goodbye to Drosophila, but excited to get this work out on bioRxiv! If you are interested in the interplay of tissue flows and cool ways to mess them up, this read is for you :) Thanks to colleagues and co-authors! www.biorxiv.org/content/10.6...
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Agustin Corbat @acorbat.bsky.social · 07/07/2026
Hope to see you there!
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Agustin Corbat @acorbat.bsky.social · 02/07/2026
📢 ¡Inscripción abierta! Taller de Fundamentos Análisis de Bioimágenes (Train-the-Trainer) 🔬💻 Para investigadores, estudiantes de posgrado y personal de microscopía de LATAM que busquen mejorar y enseñar el análisis de imágenes. 📅 3-7 de agosto, Buenos Aires (Presencial) ⏳ Límite: 16 de julio 👇🧵
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Agustin Corbat @acorbat.bsky.social · 30/04/2026
Thrilled to see @globias.bsky.social in Nature Methods! 🔬 Huge thanks to everyone who took the survey—more results are on the way!📊 Want to help? Join us to coordinate regional surveys or global efforts. Let’s build this community together!🤝 Read: www.nature.com/articles/s41... #GloBIAS #BioImage
lnkd.in
LinkedIn
This link will take you to a page that’s not on LinkedIn
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Agustin Corbat @acorbat.bsky.social · 09/04/2026
¡Ey! 🔬 ¿Trabajas con imágenes de difícil análisis? ¿Microscopía? *Jornada de Análisis de Bioimágenes* 📅 22 de abril 📍 Pabellón 0+Inf, Aula 1306, FCEN-UBA Charlas, taller hands-on, consultoría con expertos y mucho networking. Gratis. 👉 Anotate acá (o déjanos tu mail): qrto.org/Cbcb3W
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Agustin Corbat @acorbat.bsky.social · 25/03/2026
🔬¡Atención si buscas apoyo o colaboración en análisis de bioimágenes! No dejes pasar este post. El foco está puesto totalmente en potenciar el #BioimageAnalysis, una pieza clave para avanzar en nuestros proyectos. Que el idioma no sea un impedimento; pregunta si puede ser en español si necesitas.🤝
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napari @napari.org · 11/03/2026
🔬 Registration is open for our pilot Introduction to napari Workshop! napari is a powerful open-source image viewer for scientific data analysis in Python. This hands-on workshop will get you exploring multi-dimensional datasets fast. #napari #Python #ImageAnalysis #DataScience #OpenSource
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Agustin Corbat @acorbat.bsky.social · 25/02/2026
¡Qué energía en Quito!🇪🇨 Regreso de KhipuX Quito 2026 inspirado por el inmenso talento joven en nuestra región. Bajo el lema "Democratizing AI in Bioimage and Medical Imaging", vi a estudiantes con una determinación admirable por liderar el futuro de la IA. 🧵👇 biodecodinglab.github.io/khipux-quito...
biodecodinglab.github.io
KHIPUx Quito 2026 - AI in Bioimage & Medical Imaging
Join us February 23-25, 2026 for a groundbreaking conference on democratizing AI in bioimage and medical imaging.
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Agustin Corbat @acorbat.bsky.social · 21/01/2026
Empowering the next generation of bioimaging experts! 🌎 After many months crafting the Lightsheet Image Analysis Workshop 2026 with @bruvellu.bsky.social & @cuencam15.bsky.social. Seeing students finally crack their toughest project data on day 5 made every hour of prep worth it! 🧵👇
bruvellu.github.io
🔬 Light-Sheet Image Analysis Workshop 2026
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Agustin Corbat @acorbat.bsky.social · 21/01/2026
Big news! 🚀 I’m excited to share that @khipu-ai.bsky.social is coming to Quito! 🇪🇨 biodecodinglab.github.io/khipux-quito... It will be a 3-day event dedicated to democratizing AI for Bioimage and Medical Imaging in Latin America. My goal is to help build a strong, supportive community. 🧵 (1/3)
biodecodinglab.github.io
KHIPUx Quito 2026 - AI in Bioimage & Medical Imaging
Join us February 23-25, 2026 for a groundbreaking conference on democratizing AI in bioimage and medical imaging.
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Richard McElreath 🐈‍⬛ @rmcelreath.bsky.social · 09/12/2025
I'm teaching Statistical Rethinking again starting Jan 2026. This time with live lectures, divided into Beginner and Experienced sections. Will be a lot more work for me, but I hope much better for students. I will record lectures & all will be found at this link: github.com/rmcelreath/s...
course schedule as a table. Available at the link in the post.
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Agustin Corbat @acorbat.bsky.social · 02/12/2025
📢 ¡La última sesión de IdEM On-Demand de 2025 organizada por @latambioimaging.bsky.social está a solo unos días! Bonus Track: Procesamiento y análisis de imágenes 📅 4 de diciembre, 12:00 GMT-3 🎙️Agustín Corbat, Hernán Morales 🎤 Andréia Lo Costa 🔗Registrate aquí: docs.google.com/forms/d/e/1F...
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Agustin Corbat @acorbat.bsky.social · 17/11/2025
Thrilled to have presented @globias.bsky.social at the @latambioimaging.bsky.social Meeting last week! 🇦🇷🔬 I really enjoyed sharing our mission in both a lightning talk and with a poster. It was fantastic to connect with so many passionate bioimaging scientists! Let's keep building this community!
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Agustin Corbat @acorbat.bsky.social · 10/11/2025
Wrapping up an amazing day at the @latambioimaging.bsky.social meeting! Honored to witness the presentation of the Honoris Causa degree to the legendary Carlos Bustamante. A truly inspiring way to conclude today's events. 👏 #Bioimaging #CarlosBustamante #Science #HonorisCausa #LABI
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Agustin Corbat @acorbat.bsky.social · 10/11/2025
Incredible kickoff by Lia Pietrasanta at the @latambioimaging.bsky.social meeting! Fantastic insights into microscopy in the region. Ready for an inspiring week! #Bioimaging #Microscopy #LABI
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Beth Cimini 🔬💻📊 @bethcimini.bsky.social · 20/10/2025
We just hit 10 workshops submitted, with almost two weeks to go! Help us get to 20 before the last-day frantic mad dash? Teach your favorite tool today!
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Agustin Corbat @acorbat.bsky.social · 17/10/2025
I presented my views on Facilities at the 🔬Democritizing #Microscopy in LatAm #BiologistsWorkshops! Facilities aren't just equipment hubs; they also hold the Institutional Memory. You can find the slides with notes 👇: doi.org/10.5281/zeno... And a summary below!🧵
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Agustin Corbat @acorbat.bsky.social · 17/10/2025
Huge, heartfelt thanks to the @biologists.bsky.social for hosting the Democratizing Microscopy in Latin America workshop! #BiologistsWorkshops
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FocalPlane @focalplane.bsky.social · 15/10/2025
Last night we learnt about 'Microscopía Para Todos' from Licyel Paulas & 'Educaciencia' from Haydee Hernández Aviña, followed by a chance to play with their microscopes. Read more about Educaciencia: focalplane.biologists.com/2024/08/02/i... #BiologistsWorkshops
Group of people (all with big smiles!) testing out some low-cost microscopes.
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FocalPlane @focalplane.bsky.social · 12/10/2025
Our attendees receive a special welcome in Baños, including our Workshop organiser, Licyel Lenny Paulas Condori. Licyel set up ‘Microscopia Para Todos’, a STEAM outreach programme in Bolivia. Read more about Licyel & her project⤵️: focalplane.biologists.com/2023/04/25/a... #BiologistsWorkshops
People gathered in a wood and glass building with flowers and fruit in the foreground.People being served drinks in a sunny glass and wood building with lots of greenery in the background.
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Jean-Yves Tinevez @jytinevez.bsky.social · 13/10/2025
Hi all. This is the recording of the online seminar I gave following the kind invitation of #GLOBIAS. I share what we have learned delivering #BioimageAnalysis services in the IAH core facility of the @institutpasteur.bsky.social research.pasteur.fr/en/team/imag... ⬇️
research.pasteur.fr
Image Analysis Hub - Research
The Image Analysis Hub is an open-access / equal-access core facility committed to sharing bioimage analysis services expertise with the scientific community. What we do The IAH works by collaborating...
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FocalPlane @focalplane.bsky.social · 12/10/2025
The attendees are gathered, and the meeting room is ready. The next organiser that we are highlighting is Fernanda Latorre Barragán. You can read about Fer’s career in this interview with @marianadeniz.bsky.social from 2023. #BiologistsWorkshops focalplane.biologists.com/2023/07/25/a...
People smiling at the camera while sitting at a long dinner table.Room set up for a meeting
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Turku BioImaging @turkubioimaging.bsky.social · 10/10/2025
🚀Join Helsinki BioImaging as an Image Analysis Specialist🖥️to support cross-disciplinary image analysis projects. If you love coding and are interested in working at the crossroads of computer science and biology, apply by 🗓️ November 15, 2025⤵️ jobs.helsinki.fi/job/Helsinki... #jobopening
jobs.helsinki.fi
Image Analysis Specialist/Engineer/Coordinator, Helsinki Bioimaging
Image Analysis Specialist/Engineer/Coordinator, Helsinki Bioimaging
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Agustin Corbat @acorbat.bsky.social · 09/10/2025
¡Atención comunidad científica de Latam! 🌎🔬 Desde Latin American Bioimaging (@latambioimaging.bsky.social) organizamos un evento de networking único para conectar, colaborar y crecer. ¿Sos estudiante, estás en tu doctorado o ya investigás? ¡Esto es para vos! Abro hilo 👇
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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 08/10/2025
@nfdi4bioimage.bsky.social Task Area Leaders Josh Moore and Christian Tischer will introduce participants to the history and basics of OME-Zarr at the international 2025 OME-NGFF Symposium from November 10–11 in Zurich, SW. Register here: 👉 www.ema.uzh.ch/de/register/... Picture by BioVisionCenter
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napari @napari.org · 06/10/2025
Join the new plugin sustainability initiative! Everyone is invited to fill out this interest form: forms.gle/iwX6P4tuooHK... Follow along with initial discussion on Zulip: napari.zulipchat.com#narrow/chann... The first zoom meeting will be this coming week: napari.org/stable/commu...
napari.org
Meeting schedule
We hold regular meetings, the timings of which are available on our public calendar. If you are using napari or interested in how napari could be used in your work, please join one of our regular comm...
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Siân Culley @superresolusian.bsky.social · 29/09/2025
BioImage analysis friends - King's are recruiting for a full-time, permanent facility position! Come and work with fun microscopes and fun people (and me!) - please share! www.kcl.ac.uk/jobs/126345-...
kcl.ac.uk
Bioimage Analysis Specialist | King's College London
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Ignacio Arganda-Carreras @iarganda.eurosky.social · 30/09/2025
📣 We’re hiring, please RT! Fully funded 4-year PhD position in our CVPD group at @informatikaehu.bsky.social! Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬 📅 Applications open Oct 6 (deadline: ~Oct 27) 📍 San Sebastian, Spain. 👉 cvpd.github.io/post/2025-09...
cvpd.github.io
📢 Open 4-year PhD Position in Deep Learning for Bioimage Analysis! | CVPD Research group
The Computer Vision and Pattern Discovery (CVPD) group at the University of the Basque Country (UPV/EHU) is offering a fully funded 4-year PhD position within the recently awarded project TOSBI: Towar...
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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 10/09/2025
✍ If you're having difficulty writing #BioimageAnalysis code that enables others to follow your workflow, have a look at @haesleinhuepf.bsky.socials slides on „Reproducible Bio-Image Analysis using Python, Napari, Jupyter and AI“ from the #EMBOlsm25. To the slides: 👉 doi.org/10.5281/zeno...
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Journal of Cell Biology @jcb.org · 03/09/2025
Our new collection offers cell biologists practical, expert-driven guidance and best practices in the design, execution, and analysis of experiments, and the subsequent communication of their results to their peers. 👉 rupress.org/jcb/collecti... #Reproducibility
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Agustin Corbat @acorbat.bsky.social · 26/08/2025
Thrilled to announce that I'm back in Buenos Aires and open for image & data analysis projects! My focus is turning images from bioscience, ecology, & more into actionable data. I'm available for collaborations in Argentina and internationally. Check out my portfolio and contact: acorbat.github.io
acorbat.github.io
iPortfolio Bootstrap Template - Index
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GloBIAS @globias.bsky.social · 20/08/2025
Next one in the #GloBIAS seminar series: Behind the Scenes at SciLifeLab BIIF: Lessons from Managing a National Bioimage Analysis Support Unit. Presented by Anna Klemm, head of BioImage Informatics Infrastructure Unit, Uppsala University, Sweden Wednesday, 27th of August, 2pm CEST
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Joel Lüthi @joelluethi.bsky.social · 25/08/2025
We're happy to announce the 2025 International OME-NGFF workshop 🎉 📅 Dates: - Symposium: Nov 10–11, 2025 - Hackathon: Nov 12–14, 2025 📍 Location: Zurich, Switzerland Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up...  #bioimaging #openscience #OMENGFF #OMEZarr (1/x 🧵)
Visual of segmented human induced pluripotent stem cells with the key workshop dates: Symposium on November 10-11, Hackathon on November 12-14th in Zurich Switzerland
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Agustin Corbat @acorbat.bsky.social · 25/07/2025
Se extendió el deadline! Aprovechen para aplicar a este curso de análisis de imágenes 3D en Chile🔬. Todavía hay ayudas economicas para viajes🛩️! Más información en los links 👇...
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GloBIAS @globias.bsky.social · 16/07/2025
Thanks to everyone in the #GloBIAS Survey 24 workgroup! Lots of work, fun, and sometimes a bit of time zone confusion. But we got there ;-)
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Agustin Corbat @acorbat.bsky.social · 11/07/2025
📣El preprint de @globias.bsky.social esta disponible en arXiv! Fue un placer poder trabajar con un grupo internacionial en este proyecto!!! En el trabajo presentamos resultados de una encuesta indagando cuales son las necesidades de analistas de bioimagenes y como GloBIAS busca trabajar en ellas.
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GloBIAS @globias.bsky.social · 28/04/2025
Second round of hashtag#GloBIAS Free Help (previously Call4Help) is happening in May. You can register for the sessions on our webpage: www.globias.org/activities/g... Registration deadline is 7. May 2025.
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Esteban Miglietta @emiglietta.bsky.social · 10/04/2025
🚨Latin American Workshop Series🚨 The team from @bethcimini.bsky.social‘s lab at @broadinstitute.org and the Center for Open Bioimage Analysis will host three free online image analysis workshops for LATAM ... in SPANISH🇪🇸 and PORTUGUESE🇧🇷!!!🎉🎊 broad.io/latam_worksh... Deadline: April 23rd, 2025
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Joel Lüthi @joelluethi.bsky.social · 11/03/2025
🚀 We’re very excited to share our latest preprint on OME-Zarr! 🚀 Our report on the 2024 OME-NGFF Workflows Hackathon is a deep dive into the status of OME-Zarr and the great work that happened last November at the BioVisionCenter in Zurich. 🔗 Read the preprint: osf.io/preprints/bi... 🧵 (1/15)
osf.io
OSF
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paulamonterollopis.bsky.social @paulamonterollopis.bsky.social · 07/03/2025
Truly proud of everyone at QUAREP LiMi WG11. We defined “bare-minimal” guidelines for microscopy reporting to improve reproducibility in light microscopy. Check out our Zenodo upload! zenodo.org/records/1497.... Thank you all who contributed! Our comprehensive guidelines will come next!
zenodo.org
QUAREP - Bare Minimal Microscopy Reporting Requirements Checklist
Checklist of the bare minimum requirements for reporting microscopy experiments. Table 1 presents the checklist based on the REMBI metadata model (Figure 1), including examples to facilitate interpret...
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eurobioimaging.bsky.social @eurobioimaging.bsky.social · 11/03/2025
At this week's #VirtualPub, we welcome Jim Swoger, @embl.org in Barcelona, on "Cell 3D Positioning by Optical Encoding (C3PO) and its application to spatial transcriptomics." Join us! 🗓️ Friday, March 14 @ 13:00 CET Register 🔽 buff.ly/gcvGlV8
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Kota Miura @kbias.bsky.social · 30/01/2025
a prerelease web page for the GloBIAS 2025 conference in Kobe, Japan: bioimaging.riken.jp/globias2025/ Keep your dates! Oct 26 - Oct 31, 2025
bioimaging.riken.jp
GloBIAS 2025 in Kobe
GloBIAS Bioimage Analysis in-person Workshop 2025 in Kobe About Date: Oct 26 - Oct 31, 2025 Venue: Riken BDR, Japan Access to Riken Kobe Campus https://www.kobe.riken.jp/en/access/ ...
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AI4Life @ai4life.bsky.social · 28/01/2025
🚨 Save the Date! 🚨 AI4Life & @globias.bsky.social are hosting a 4-part webinar series to showcase AI4Life services and lessons learned. 📅 When: Feb 13, Apr 10, Jun 12, Aug 14 🖥️ How: Online | 🎥 Recorded 🔗 Registration: bit.ly/registration...
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Jennifer Waters @jencwaters.bsky.social · 21/01/2025
Applications for our Quantitative Imaging: From Acquisition to Analysis 2025 course (Mar 24-Apr 8) are due on Jan 31! Come immerse yourself in microscopy and image analysis with me, @talleylambert.bsky.social, @bethcimini.bsky.social, @florianjug.bsky.social & Hunter Elliott! Please RT
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FocalPlane @focalplane.bsky.social · 16/01/2025
We are looking for our next cohort of #FocalPlaneCorrespondents! If you are interested in getting some #scicomm experience alongside your research, check out our call and drop us an email if you have any questions. Deadline for applications: 20 January 2025
focalplane.biologists.com
Become a FocalPlane correspondent - FocalPlane
Become a FocalPlane correspondent - Discussions
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