NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 01/10/2026🕐 The RDM4mic Meeting is just around the corner, and we would like to remind you of the online introductory session hosted by Thomas Zobel today, 1 October, at 1:00 pm. You can find the Zoom link for the introductory session on the event website: 👉 hackmd.io/Z0IahqkXSIun... 000
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 01/10/2026At this week's DSgG Community Meeting, themed “DSgG – from going to growing,” our data stewards Vanessa Fuchs, Cornelia Wetzker, and Jens Wendt presented a poster introducing @nfdi4bioimage.bsky.social and its data steward concept. Find the poster on zenodo: 👉 doi.org/10.5281/zeno... 020
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 30/09/2026New publication: "Curriculum for Bioimaging Data Stewardship: A Systematic Review of Existing Training Resources." Congrats to Maximilian Müller et al! 💐 👉 doi.org/10.12688/f10... Feedback from the community would be extremely valuable, and volunteers for the open peer review are very welcome! 100
Reposted by NFDI4BIOIMAGEGerman National Research Data Infrastructure (NFDI) @nfdi.de · 30/09/2026🧩 Would you like to expand your data skills? The Historical Insight and Skills Training Online Catalogue (HISTOCAT) by #NFDI4Memory offers a curated collection of open educational resources all about data literacy in history-related disciplinen, feel free to contact us! 🔗 4memory.de/unterstuetzu... 111
Reposted by NFDI4BIOIMAGERobert Haase @haesleinhuepf.bsky.social · 29/09/2026Yesterday I gave a talk about "How Generative AI impacts [BioImage] Data Science" @ensdelyon.bsky.social , slides #openaccess. Thanks again to @ckirchhelle.bsky.social and @rdplab.bsky.social for the fantastic discussions and for having me! doi.org/10.5281/zeno... 1134
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 23/09/2026Between consortium and campus – this is exactly where most of our data stewards work. If you’ve ever wondered whether this role might be right for you, then these insights by our @nfdi4bioimage.bsky.social data steward Dr. Cornelia Wetzker might be of interest for you. 👉 doi.org/10.5281/zeno... 020
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 17/09/2026The #BoostingBioDataBootcamp has just concluded. We want to thank all speakers, workshop providers, and, of course, all participants for lively and fruitful discussions and exchanges. @nfdi4microbiota.bsky.social, #NFDI4Biodiversity, @nfdi4plants.bsky.social, @fairagro.bsky.social. 👏 001
Reposted by NFDI4BIOIMAGEChris Schmidt @schmchris.bsky.social · 16/09/2026#BoostingBiodataBootcamp by @nfdi4microbiota.bsky.social, @fairagro.bsky.social, @nfdi4plants.bsky.social, #NFDI4Biodiversity & @nfdi4bioimage.bsky.social in full swing. Impressions from day 1 incl. the opening by Konrad Förstner, a keynote by Tom Clavel & the workshop afternoon. Day 2 kickin' off! 052
Reposted by NFDI4BIOIMAGEChris Schmidt @schmchris.bsky.social · 15/09/2026On my way to Aachen. Looking forward to the Boosting Biodata Bootcamp by #NFDI consortia @fairagro.bsky.social @nfdi4microbiota.bsky.social @nfdi4plants.bsky.social #NFDI4Biodiversity and @nfdi4bioimage.bsky.social! Looking forward to three exciting days with talks and workshops around Biodata RDM! 051
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 14/09/2026Join us on November 10 for a journey with your research data at #TdF2026 in NRW. A successful data journey requires good planning, right equipment, and a clear goal. @sweidtkamp.bsky.social from @nfdi4bioimage.bsky.social and other speakers will be there to help you prepare for your data journey. 100
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 10/09/2026@nfdi.de is featured in the latest issue of "forschung" – the magazine of @dfg.de. 🗞️ The article titled "Research Data as a Public Good" provides an overview of the current status of the NFDI and explains why science cannot exist without a modern data infrastructure. 110
Reposted by NFDI4BIOIMAGENFDI4Chem @nfdi4chem.de · 01/09/2026Be a Leader! 🏆 It is already possible today to store your research data in accordance with the FAIR principles ⚗️ Do you want to lead the way too? Then enter your FAIR dataset for the FAIR4Chem Award 2027 and a prize of 500 € 💰 APPLICATION PERIOD starts on 01 September 26 t1p.de/pga65 043
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 04/09/2026A new @nfdi4bioimage.bsky.social newsletter has been sent out 📬 In addition to the latest publications for your reading list, we’re giving you an overview of upcoming events and a recap of what’s happened over the past three months. 👉 nfdi4bioimage.de/en/news/news... 001
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 01/09/2026📆 In September our @nfdi4bioimage.bsky.social calendar image shows two Neopagetopsis ionah icefish nest arrays in the Filchner Trough, Antarctica. The corresponding dataset is stored in the PANGAEA database, which focuses on georeferenced observational and experimental data. 121
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 26/08/2026"I submitted my Master's thesis a year ago. Now I would like to reuse the files for my dissertation..." But you no longer have access to the same editing programs, and it’s no longer clear from the file names and dates which file is the final version? 110
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 21/08/2026An insight into the global bioimage analysis community 🌍 Last month, the results of the GloBIAS survey 2024 were published in the Journal of Microscopy. Among the authors were @nfdi4bioimage.bsky.social task area leads @haesleinhuepf.bsky.social and Christian Tischer. 122
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 19/08/2026The registration for the Boosting Biodata Bootcamp has been extended until August 30. Workshop places are limited, so register early! 000
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 04/08/2026Making the Hidden Visible: A fluorescence lifetime imaging dataset shared via RIKEN’s SSBD repository In this month's @nfdi4bioimage.bsky.social calendar, we present a fluorescence-lifetime imaging microscopy (FLIM) dataset by Conni Wetzker, Marcelo Zoccoler, and Gunar Fabig. 101
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 30/07/2026Register for the Boosting Biodata Bootcamp This year, the @nfdi4microbiota.bsky.social conference, 'Boosting Biodata Bootcamp', is being organized in collaboration with the BioData Interest Group: @fairagro.bsky.social, @nfdi4plants.bsky.social, NFDI4Biodiversity and @nfdi4bioimage.bsky.social. 100
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 28/07/2026Learn how to program advanced data analysis workflows with the visual programming language #JIPipe using the material of the JIPipe Spring course 2026 given by Ruman Gerst and Zoltan Cseresnyes. To the basic introduction: www.youtube.com/watch?v=KI8r... To the material: jipipe.hki-jena.de/tutorials/youtube.comJIPipe Tutorial (2026) - Basic Introduction - JSC2026A basic introduction into JIPipe. This is an edited recording from the JIPipe Spring Course 2026 (JSC2026). Please note that we experienced issues with the audio recording. You can find all data… 020
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 23/07/2026In April, representatives of the Biodata Interest Group, an alliance of six biology-focused @nfdi.de consortia, met to further solidify their collaboration. 131
Reposted by NFDI4BIOIMAGEFAIRagro @fairagro.bsky.social · 22/07/2026Im April haben sich Vertreter*innen von @fairagro.bsky.social @nfdi4plants.bsky.social @nfdi4bioimage.bsky.social @nfdi4objects.bsky.social @nfdi4microbiota.bsky.social und #NFDI4Biodiversity getroffen, um die neue Biodata Interest Group voranzubringen - mehr und zum Bericht auf zenodo: t1p.de/rv25vt1p.deWorkshop-Bericht der Biodata Interest Group jetzt verfügbar! - FAIRagroMitte April haben sich Vertreter*innen der sechs NFDI-Konsortien FAIRagro, DataPLANT, NFDI4Bioimage, NFDI4Biodiversity, NFDI4Objects und NFDI4Microbiota in Berlin beim Julius Kühn Institut getroffen, ... 032
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 21/07/2026The following poster involves developing a Galaxy‑based workflow that includes CellProfiler as a native tool, creating a fully reproducible analysis environment for the Cell Painting community. The poster presented at the CytoData Symposium 2026 is available in the next post. 👇 100
Reposted by NFDI4BIOIMAGEforschungsdaten.info @forschungsdaten.info · 20/07/2026Dieser Vorschlag vonseiten der Konsortien @nfdi4bioimage.bsky.social, NFDI4Immuno, @nfdi4microbiota.bsky.social, @ghga.bsky.social und NFDI4Health steht im Kontext struktureller Veränderungen bei der @nfdi.de. forschungsdaten.info/praxis-kompa... 031
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 16/07/2026We are delighted by the Joint Science Conference's decision to extend the @nfdi.de until 2038. 🤗 Together with NFDI4Health, @nfdi4microbiota.bsky.social, NFDI4Immuno and @ghga.bsky.social we will establish the 'Biomedicine' section. Find our joint statement on Zenodo: zenodo.org/records/2129...zenodo.orgGemeinsame Erklärung der BioMed-Konsortien der Nationalen Forschungsdateninfrastruktur (NFDI) zur Einrichtung eines Fachbereichs Biomedizin 042
Reposted by NFDI4BIOIMAGEGerman National Research Data Infrastructure (NFDI) @nfdi.de · 10/07/2026Die #GWK hat in ihrer heutigen Sitzung eine neue Bund-Länder-Vereinbarung (BLV) beschlossen. Bund und Länder wollen #NFDI mit bis zu rund 98,7 Millionen Euro pro Jahr im Zeitraum von 2029 bis 2038 weiterfördern. 🎉 ℹ️ Weitere Infos: www.nfdi.de/gwk-beschlie... #fdm #rdm #researchdata 11410
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 13/07/2026Last Tuesday, @sweidtkamp.bsky.social, @schmchris.bsky.social, @joshmoore.bsky.social, @antjekeppler.bsky.social and @haesleinhuepf.bsky.social represented @nfdi4bioimage.bsky.social at the @nfdi.de interim report symposium, reporting on the consortium's progress and activities within the community. 0121
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 07/07/2026📆 New month – new data publication featured in the @nfdi4bioimage.bsky.social wall calendar! The calendar image for July, taken by Pauline Wanjiku Kibui, shows testicular tissue, with the seminiferous tubules depicted in red, the cell nuclei in green, and the actin in the smooth muscle in blue. 131
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 01/07/2026A new collection of key concepts and best practices for managing imaging data throughout the research lifecycle, by @ebi.embl.org featuring @nfdi4bioimage.bsky.social contributions from Christian Schmidt, @tom-bssnnt.bsky.social, Josh Moore and Stefanie Weidtkamp-Peters, is now available. 051
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 25/06/2026Do you offer courses on research data management at your facility, or are you planning to? Take a look at the slides from the “Train-the-Trainer” workshop on RDM, which took place in May in collaboration with @saxfdm.bsky.social, Come2Data, @scadsai.bsky.social, and @nfdi4bioimage.bsky.social. 130
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 23/06/2026OME-Zarr: From Idea to Standard and Beyond? Today, we would like to share with you the presentation slides developed by @joshmoore.bsky.social for a talk in the @bioimagingna.bsky.social Insights and Educational Tools from Industry Series. 👉 Find out more: doi.org/10.5281/zeno... 152
Reposted by NFDI4BIOIMAGEChris Schmidt @schmchris.bsky.social · 16/06/2026Team @gerbi-gmb.de and @nfdi4bioimage.bsky.social have arrived at #ELMI2026 in the beautiful city of Coimbra, Portugal! We're super excited about this event, now about to kick off with the Core Facility Day. 🔬 092
Reposted by NFDI4BIOIMAGEChris Schmidt @schmchris.bsky.social · 19/06/20264 days of #ELMI2026 have just come to an end. A huge thank you and congratulations to @ppbioimaging.bsky.social for an outstanding organization and hospitality. It was an honor to participate and represent @nfdi4bioimage.bsky.social's work within this great scientific community. 👏🙏 0113
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 19/06/2026You can't spell AI without FAIR❗ Here are the presentation slides from @jo-soltwedel.bsky.social talk, "You Can't Spell AI Without FAIR: How Data Management Leaves Footprints in Image Analysis," presented at the #ELMI2026 conference. 👉 Find the presentation on Zenodo: doi.org/10.5281/zeno... 0114
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 16/06/2026At the #ELMI2026 Core Facility Day, @schmchris.bsky.social presented the BAND (BioImage Analysis Desktop) service by @nfdi4bioimage.bsky.social on behalf of its core developer Yi Sun from EMBL Heidelberg: low-barrier access to powerful compute resources for bioimage analysis available in the cloud. 061
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 16/06/2026At #ELMI2026, @lisa-schaefer.bsky.social gave an enlightening talk about how to do surveys in core facilities. We're more than glad to have Lisa's expertise for our survey on bioimaging RDM. The survey is still open until June 20, use your chance to participate: nfdi4bioimage.de/en/community...nfdi4bioimage.deCommunity survey 2026 - NFDI4BIOIMAGECommunity Survey 2026 080
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 08/06/2026Our NFDI4BIOIMAGE Summer Newsletter is now available! 🎉 Recently published, it provides updates on news, upcoming events and noteworthy articles from the bioimaging community. 👉 Further information about the newsletter and the registration you can find here: nfdi4bioimage.de/en/news/news... 151
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 04/06/2026@nfdi4bioimage.bsky.social data steward Mohsen Ahmadi presented his work on a "Bioimaging Data Management Workflow for Plasma Medicine" at the 11th International Conference on Plasma Medicine (ICPM) in Japan this week. Read more about the workflow here: 👉 www.biorxiv.org/content/10.6... 011
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 02/06/2026📅 Investigating in vivo tumor metabolismin in the @nfdi4bioimage.bsky.social wall calendar This image by Dario Livio Longo of the Italian National Research council shows the quantification of glucose consumption in a mouse model of breast cancer using magnetic resonance imaging. 111
Reposted by NFDI4BIOIMAGEforschungsdaten.info @forschungsdaten.info · 02/06/2026📢 Boosting Biodata Bootcamp 2026: Call for Abstracts verlängert Die Konsortien @nfdi4microbiota.bsky.social, @nfdi4plants.bsky.social, @fairagro.bsky.social, NFDI4Biodiversity und @nfdi4bioimage.bsky.social rufen auf, bis zum 15. Juni 2026 Beiträge einzureichen forschungsdaten.info/praxis-kompa...forschungsdaten.infoBoosting Biodata Bootcamp 2026: Call for Abstracts verlängertInteressierte sind aufgerufen, noch bis zum 15. Juni 2026 Beiträge einzureichen. 054
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 29/05/2026In March, @haesleinhuepf.bsky.social gave a talk at the University of Copenhagen on “How Generative Artificial Intelligence Impacts Bioimage Data Science,” in which he shared his experience with large language models (LLMs) and vision language models (VLMs) for bioimage analysis. Check it out below. 011
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 27/05/2026Last week, the communications managers from all @nfdi.de di.de consortia met in Mainz to exchange best practices and discuss joint campaigns. 👀 121
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 22/05/2026📅 Find the story behind the May image in the @nfdi4bioimage.bsky.social wall calendar and read more about what it takes to make bioimaging data truly reusable here: 👉 nfdi4bioimage.de/en/community... To the corresponding dataset on @bioimagearchive.bsky.social: 👉 www.ebi.ac.uk/biostudies/b... 062
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 20/05/2026You can now register for the Boosting Biodata Bootcamp 2026! Gain insights into research data management and data analysis, and learn how to advance your research and make your data and tools #FAIR. To the registration: 👉 events.hifis.net/event/3702/r... 002
Reposted by NFDI4BIOIMAGEGerman BioImaging @gerbi-gmb.de · 19/03/2026📢 Bioimaging folks, your input matters! The NFDI4BIOIMAGE Research Data Management Survey 2026 is live. Help shape future tools, services & training. ⏱️ ~20 min | 🔒 anonymous | 🌍 open to all 👉 nfdi4bioimage.de/en/community... 🗓️ Deadline: April 30, 2026 Please share! 🧬nfdi4bioimage.deCommunity survey 2026 - NFDI4BIOIMAGECommunity Survey 2026 01211
Reposted by NFDI4BIOIMAGEChris Schmidt @schmchris.bsky.social · 19/05/2026Great to be guests at the Akademie der Wissenschaften und der Literatur in Mainz joining the @nfdi.de Managementkreis-Präsenztreffen representing @nfdi4bioimage.bsky.social. Many thanks to @nfdi4culture.bsky.social, nfdi4memory, and @nfdi4chem.de for the organization and invitation. #OneNFDI 031
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 14/05/2026Researchers from @ufz.de, @scadsai.bsky.social and @nfdi4bioimage.bsky.social present a KNIME-to-Galaxy workflow that extracts KNIME node configurations, processes them using LLM-based imaging, and generates valid Galaxy workflow structures. Find the workflow here: 👉 doi.org/10.5281/zeno... 121
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 13/05/2026At the 5th Workshop on FAIR Data in #PlasmaScience (FDPS-V) at @ruhr-uni-bochum.de, Dr. Mohsen Ahmadi presented his work integrating research data management (#RDM) systems for #bioimaging in plasma medicine with Jupyter Notebook workflows. 👉 Find out more: www.biorxiv.org/content/10.6... 032
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 12/05/2026At the Chemnitz #Linux Days, Michael Scherle and Rafael Gieschke presented the current status of the VDI for #OpenStack project. This project aims to develop a VDI based open source technology. 👉 Watch the video: media.ccc.de/v/clt26-417-... 👉 Get the slides: chemnitzer.linux-tage.de/2026/media/p... 020
Reposted by NFDI4BIOIMAGEGlobal BioImaging @globalbioimaging.bsky.social · 11/05/2026Global BioImaging & German BioImaging launch Spotlight on DATA: 💡 Built by the Image Data Management WG 📊 Featuring a practical “10 Steps” framework 🌍 Community-driven, real-world focus 📅 Live: 28 May | 17:00 CEST 🔁 Replay:29 May | 08:00 CEST 👉 Register/contribute: docs.google.com/forms/d/e/1F... 053