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Nikita Frolov 🇺🇦

@nikitaphysics.bsky.social
151 followers 257 following 44 posts

Physicist interested in complex living systems @lendertgelens.bsky.social Lab, KU Leuven Complex Systems | Systems Biology

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Reposted by Nikita Frolov 🇺🇦
James Briscoe @jamesbriscoe.bsky.social · 27/08/2026
Our latest: We develop a dynamical landscape modelling framework based on time resolved single-cell data Applied to neural tube fate decisions it shows cell fate decisions as flip bifurcations, a circular topology & it predicts unseen signalling regimes @plosbiology.org doi.org/10.1371/jour...
doi.org
Dynamic Landscape Analysis of cell fate decisions provides predictive models of neural development from single-cell data
Applying dynamical systems theory to single-cell data can provide a detailed picture of the cellular states observed during cell fate decisions. This study presents a dynamic landscape analysis (DLA) ...
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Reese Richardson @reeserichardson.bsky.social · 25/08/2026
A massive update: At least ~15 companies~ are selling scientists antibodies using faked validation data. We've documented 18,000+ manipulated images on 17,000+ products sold by leading laboratory suppliers including Thermo Fisher, Abcam, Santa Cruz Biotechnology, Millipore Sigma and Bio-Techne. 1/🧵
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Ricard Solé @ricardsole.bsky.social · 27/12/2024
Is it possible to create an artificial cell from scratch? What kind of design principles and constraints will be involved? How can physics and maths guide research? Check our @rsocpublishing.bsky.social paper, from chemistry to synthetic biology. royalsocietypublishing.org/doi/10.1098/...
royalsocietypublishing.org
Synthetic protocell biology: from reproduction to computation | Philosophical Transactions of the Royal Society B: Biological Sciences
Cells are the building blocks of biological complexity. They are complex systems sustained by the coordinated cooperative dynamics of several biochemical networks. Their replication, adaptation and co...
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Nikita Frolov 🇺🇦 @nikitaphysics.bsky.social · 02/07/2026
Hey @lendertgelens.bsky.social , what do you think? 😅
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Lior Steinberg @steinberg.nu · 09/06/2026
A smart city has nothing to do with artificial intelligence or sensors. A city is smart when children can walk and cycle freely and safely. Technology is only a bonus. 📸 Picture by @dutchcycling.nl
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EMBL @embl.org · 09/06/2026
Congratulations, Gautam Dey and Omaya Dudin! The two collaborators have received the 2026 EMBO Gold Medal for outstanding contributions to the field of evolutionary cell biology. www.embl.org/news/awards-... @gautamdey.bsky.social @dudinlab.bsky.social @embo.org
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Girish Kale @girishkalephd.bsky.social · 28/05/2026
Our latest manuscript on (Harry Potter and) the effect of elevated temperature on embryonic development in flies. Even a small increase in temperature causes developmental defects, indicating problems in the face of global warming! www.nature.com/articles/s41...
nature.com
Elevated temperature fatally disrupts nuclear divisions in the early Drosophila embryo - Nature Communications
Kale et al. show that nuclear divisions are defective at elevated temperature, leading to gastrulation defects and embryo lethality. Their work finds that F-actin – microtubule interactions during mit...
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Will Ratcliff @wcratcliff.bsky.social · 15/05/2026
1/35 New preprint! We show that obligate multicellularity removes fundamental population genetic barriers to multicellular adaptation. Even a brief unicellular phase can dramatically constrain the evolution of beneficial multicellular traits. www.biorxiv.org/content/10.6...
biorxiv.org
Obligate multicellularity circumvents population genetic barriers to collective-level adaptation
Complex multicellularity has evolved in just five lineages (animals, plants, brown algae, red algae, and fungi) and in each case, these organisms develop clonally and are obligately multicellular. While prior work has shown that clonal development plays a critical role in the evolution of complex multicellularity, none has disentangled this from the impact of obligate vs facultative multicellular life cycles. Here we use experimental evolution with engineered snowflake yeast ( Saccharomyces cerevisiae ) to directly test how life cycle structure affects multicellular adaptation. We created isogenic strains capable of switching between unicellular and clonal multicellular phases, then evolved populations for 192 days under obligately multicellular, facultatively multicellular, and obligately unicellular regimes. Obligately multicellular populations rapidly evolved larger size, primarily driven by a whole genome duplication, in all five replicates. Facultative populations showed dramatically constrained evolution, with tetraploidy evolving in only 2/10 facultative populations despite experiments demonstrating that it is strongly beneficial across the full life cycle. Mathematical modeling reveals the mechanistic basis for this constraint: facultative life cycles create establishment barriers through two population genetic effects. Group formation dramatically reduces the number of units of selection, making beneficial multicellular mutations vulnerable to drift. This asymmetry in population size between life cycle phases also allows cell-level selection to overpower group-level selection, eliminating mutations that provide group-level benefits but carry cell-level costs. These findings demonstrate that obligate multicellularity circumvents fundamental population genetic barriers to collective-level adaptation, helping explain why complex multicellularity has evolved exclusively in obligately multicellular lineages, and suggesting similar constraints may operate in other evolutionary transitions in individuality. ### Competing Interest Statement The authors have declared no competing interest. U.S. National Science Foundation, https://ror.org/021nxhr62, DEB-1845363 Howard Hughes Medical Institute Gilliam Fellowship National Science Foundation Graduate Research Fellowship
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Ulrich Schwarz @ulrichschwarz.bsky.social · 23/05/2026
Fever - friend or foe? Happy to announce our International Marsilius Academy Feel the Heat – Science and Histories of Fever 📅 20–25 September 2026 | Marsilius Kolleg, Heidelberg ⏰ Application deadline: 14 June 2026 👉 More information and application: lnkd.in/eEmXDYgZ
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Rita Strack @ritastrack.bsky.social · 21/05/2026
Pardon the language but this threadless shirt made me LOL www.threadless.com/shop/@lousyd...
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Nicoletta Petridou @nicolettapetridou.bsky.social · 15/05/2026
Glad to see this out in its final form! www.nature.com/articles/s41... What changed since the preprint? Wonderful experiments disentangling the effect of receptor binding vs tissue porosity on Nodal diffusion, plus one of the smoothest review experiences! Thanks @natcellbio.nature.com & reviewers 🙏
nature.com
Tissue rigidity phase transition shapes morphogen gradients - Nature Cell Biology
Autorino et al. report a feedback loop between Nodal signalling and tissue phase transitions in zebrafish embryos. Nodal alters adhesion, triggering tissue rigidification and reduced porosity, which l...
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Mehmet Can Uçar @mehmetcanucar.bsky.social · 08/05/2026
Summer is coming, but how will you maximize your picnic space when everyone else is doing the same? In our new preprint, we show that branched cells may have an elegant solution: As cells grow and repel neighbors, they don't just cover space, but reach a hidden order called hyperuniformity! 🧪⚛️
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Wolfgang Huber @wkhuber.bsky.social · 30/04/2026
How can we measure increased productivity of scientists, as a whole, whether from more AI, more funding or other measures, if the total number of Nature papers per week always stays the same?
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EMBO @embo.org · 29/04/2026
Sign up by 27 May for the EMBO Solutions #training "How to write a scientific paper" delivered by @embopress.org editors at the upcoming meeting: www.embl.org/about/info/c... 🧪 @embolableadership.bsky.social @embl.org #EESMicrotubules #EMBOevents
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Nikita Frolov 🇺🇦 @nikitaphysics.bsky.social · 17/04/2026
I am happy that our 2-part review of different approaches to modeling temperature effects in biological systems is out online! Want to know more? Read this nice summary by @lendertgelens.bsky.social and dive into our articles 😉
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Nikita Frolov 🇺🇦 @nikitaphysics.bsky.social · 07/04/2026
Flexing with my oldest and our Newroz (neurosis) in Dresden
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Minas Karamanis @minaskar.bsky.social · 30/03/2026
Hey, I wrote a thing about AI in astrophysics ergosphere.blog/posts/the-ma...
ergosphere.blog
The machines are fine. I'm worried about us.
On AI agents, grunt work, and the part of science that isn't replaceable.
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Nikita Frolov 🇺🇦 @nikitaphysics.bsky.social · 04/04/2026
Meeting great-grandparent @ Berlin Museum für Naturkunde
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James Briscoe @jamesbriscoe.bsky.social · 01/04/2026
A question I get asked all the time by @dev-journal.bsky.social authors "Why does it cost so much to publish a paper?" We break down the finances and explain where the money goes Spoiler: quality publishing takes a village (people + infrastructure) journals.biologists.com/dev/article/...
journals.biologists.com
‘Why is publishing so expensive?’
For many of us who work in scientific publishing, the title of this Editorial is a question we hear all the time when we're out talking to academics. And it's a perfectly reasonable one. After all, re...
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myosinactncrazy.bsky.social @myosinactncrazy.bsky.social · 30/03/2026
www.nature.com/articles/s41...
nature.com
Compartmentalized cytoplasmic tradewinds direct soluble proteins - Nature Communications
Cells use fluid flow to deliver proteins to their leading edge. An actin barrier creates a compartment where contraction drives flow, steering proteins toward growing regions. This mechanism coordinat...
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James Briscoe @jamesbriscoe.bsky.social · 09/03/2026
New Perspective form Rory Maizels & me: "Gene regulatory networks: from correlative models to causal explanations" Gene regulatory networks are supposed to give us mechanistic explanations of development, so why are we drowning in 'hairballs' of statistical correlations? rdcu.be/e7zx7
rdcu.be
Gene regulatory networks: from correlative models to causal explanations
Nature Reviews Genetics - In this Perspective, Maizels and Briscoe discuss the limitations of current models of gene regulatory networks and outline solutions to harness data abundance without...
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Nicolas Minc @minclab.bsky.social · 26/01/2026
Latest work from the lab by Aude Nommick et al., in which we propose a "size-scaling" model for microtubule force exertion that regulates centrosome centration vs decentration during embryo development! @ijmonod.bsky.social www.biorxiv.org/content/10.6...
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Benoit Ladoux @bladoux.bsky.social · 26/01/2026
Happy to highlight our collaborative work from our @ijmonod.bsky.social team with @destriano.bsky.social, B. Goyeau and M. Chabanon. Cytoplasmic crowding acts as a porous medium that hinders macromolecular diffusivity. Plus: a clever way to measure cell volume. www.pnas.org/doi/10.1073/...
pnas.org
Cytoplasmic crowding acts as a porous medium reducing macromolecule diffusion | PNAS
Intracellular transport of macromolecules is crucial for the proper functioning of most cellular processes. Although intracellular crowding is know...
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David Brückner @davidbrueckner.bsky.social · 23/01/2026
Our review on Marr's levels in embryonic development is now out in @prxlife.bsky.social ! journals.aps.org/prxlife/abst...
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Manuel Thery @manuelthery.bsky.social · 05/12/2025
#LivingArchitectures We put cells and cytoskeleton filaments on the architecture of the musée d'Orsay. www.musee-orsay.fr/fr/agenda/ev... Scientists of the #CytoMorphoLab adapted their protocols to illustrate the questions that keep them awake at night. -> Two shows on the 24th and 25th of January.
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Bardin Lab @bardinlab.bsky.social · 03/12/2025
Come join us in beautiful Roscoff for this Conference Jacques Monod on Developmental regulation: from molecular to ecological niches May 18-22, 2026 Roscoff, France Abstract deadline: January 31, 2026 Apply here: cjm.sb-roscoff.fr/en
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Nikita Frolov 🇺🇦 @nikitaphysics.bsky.social · 14/11/2025
Insightful talk with many amazing pictures of microtubule-motor patterning by Manuel Théry @manuelthery.bsky.social at the Paris Cytoskeleton Day 2025
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Ulrich Schwarz @ulrichschwarz.bsky.social · 14/11/2025
Finally out in #PRXLife: our theory on the effect of temperature on the completion time of large networks. Using graph theory, one can show that the Arrhenius plot is quadratic, in excellent agreement with experimental data from fly development. Read the open access paper here: go.aps.org/48brig2
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Suraj Shankar 🏳️‍🌈 @surajshankar.bsky.social · 24/10/2025
Preprint 🚨! B cells form localized patterns in the immune synapse when mature, allowing improved affinity discrimination. How? We suggest a new mechanism using dynamic active forces and feedback! Read more @ arxiv.org/abs/2510.18771. Great colab with Shenshen Wang, Tom Chou and Tony Wong (UCLA).
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Nikita Frolov 🇺🇦 @nikitaphysics.bsky.social · 22/10/2025
🚨 Late preprint alert! Why do biological process rates scale nonlinearly with temperature, deviating from the straight line on an Arrhenius plot? The key may lie in their inherent complexity! More in thread and here: doi.org/10.1101/2025...
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Nikita Frolov 🇺🇦 @nikitaphysics.bsky.social · 16/10/2025
Last year at EMBL, Prof. McIntosh gave a historical overview of the discovery of dynamical instability, and it was one of the most insightful and fun lectures I've ever listened to. Really excited to read this piece from him.
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Kirsty Wan @micromotility.bsky.social · 15/10/2025
Final version of our paper on ciliary metachronal waves out now in Science Advances! doi.org/10.1126/scia... This is the main thesis work of my PhD student Rebecca Poon, who caught many #platnereis larvae and tirelessly ablated them with a laser. THREAD
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EMBO @embo.org · 07/10/2025
Learn all things #cytoskeleton #research in an interdisciplinary environment at EMBO Workshop "Structure and Function of the Cytoskeleton" in Paris, FR, 7–10 April 2026. Deadline: 20 December 2025 meetings.embo.org/event/26-cytoskel… #EMBOCytoskeletalFunction #EMBOevents #conference 🧪
meetings.embo.org
Structure and Function of the Cytoskeleton
The cytoskeleton, a dynamic and intricate network of protein filaments, is found within the cytoplasm of all cells, from bacteria and archaea to complex eukaryotes. This essential cellular component …
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Simone Reber @simonereber.bsky.social · 24/09/2025
Join us next Tuesday (30/09) for talks by @gautamdey.bsky.social @embl.org & Andreas Heim @uni-konstanz.de & Simonetta Piatti @crbm-montpellier.bsky.social
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Jan Rombouts @janrombouts.bsky.social · 18/09/2025
Please allow me to introduce... our new preprint 🎉 Together with Michael Zhao, Anna Erzberger and Alexander Aulehla, we investigate pattern formation due to aggregation in confined systems. You can find it at arxiv.org/abs/2509.08533 @michaelzhao.bsky.social @erzbergerlab.bsky.social
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Barcelona Collaboratorium @barcelonacollaboratorium.com · 18/09/2025
On Thursday, Sept 25, we host Lendert Gelens (KU Leuven) for a seminar: "Beyond Arrhenius: How temperature scales biological time". He will show how biological timing changes across temperatures. barcelonacollaboratorium.com #seminar #KULeuven #EMBL #BCNCollaboratorium
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Journal of Cell Biology @jcb.org · 18/09/2025
In this Viewpoint, Adam Zweifach explains how to calculate how many cells to analyze per sample to achieve reasonable statistical power in #microscopy experiments. rupress.org/jcb/article/... 📕 In #Reproducibility and Best Practices in Cell Biology: rupress.org/jcb/collecti...
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Kirsty Wan @micromotility.bsky.social · 23/08/2025
Complex behaviour is not limited to animals! Here we map the entire spectrum of waveforms dynamics on a quadriflagellate single cell with 4x 70um (!) #cilia, to a low dimensional behavioural manifold with surprising structure! #protistsonsky All revealed in our new preprint doi.org/10.1101/2025...
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Ricard Solé @ricardsole.bsky.social · 10/09/2025
Can a single cell learn? Even without a brain, some microbes show simple forms of cognition. Can this basal cognition be engineered? Check our new paper with @jordiplam.bsky.social on the minimal synthetic circuits & their cognitive limits. @drmichaellevin.bsky.social www.biorxiv.org/content/10.1...
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Quanta Magazine @quantamagazine.org · 12/09/2025
New research shows that the cytoskeleton of human cells have a lot more in common with our ancient ancestors than we might think.
quantamagazine.org
Tiny Tubes Reveal Clues to the Evolution of Complex Life | Quanta Magazine
Scientists have identified tubulin structures in primitive Asgard archea that may have been the precursor of our own cellular skeletons.
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EMBL Events @events.embl.org · 11/09/2025
Are you ready for a symposium dedicated to microtubule dynamics, function, and structure? 🙌 #EESMicrotubules will bring together researchers who share an interest in microtubule biology and its relevance to health and disease 🩺 💻 s.embl.org/ees26-09-bl ✒️ Submit your abstract by 11 March
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Institut Jacques Monod @ijmonod.bsky.social · 10/09/2025
📣 Paris Cytoskeleton day 2025 - Registrations are open! 📆 November 14th 📍 Institut Jacques Monod 🔗 pcd2025.sciencesconf.org Abstract submission closes on 19 October Registration closes on 7 November @romet-jegou-lab.bsky.social @upcite.bsky.social @cnrs-idf-villejuif.bsky.social
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Nikita Frolov 🇺🇦 @nikitaphysics.bsky.social · 05/09/2025
Proud moment! The central results of my research over the last three years – specifically, on how the nucleus contributes to cell cycle scaling – were recently published in Current Biology. Check out the paper and the thread below for more details! 👇👇👇
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Zachary Gao Sun @thezgs.bsky.social · 18/06/2025
This piece of work from my PhD is FRESHLY out of the oven in @natureportfolio.nature.com Nature Physics! It illustrates how architecture and active stress mutually regulate Criticality and exhibit Anderson Localization-like phenomenon. www.nature.com/articles/s41...
nature.com
Feedback between F-actin organization and active stress governs criticality and energy localization in the cell cytoskeleton - Nature Physics
Self-organized criticality can occur in cellular systems, but its origins remain unclear. Now it is shown that cytoskeletal criticality is influenced by the F-actin architecture and myosin active stre...
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Joe Stieb @joestieb.bsky.social · 15/06/2025
These people are the enemy.
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Bardin Lab @bardinlab.bsky.social · 13/05/2025
Kseniia Petrova is still in detention since Feb 16! I Came to Study Aging. Now I’m Trapped in ICE Detention. www.nytimes.com/2025/05/13/o...
nytimes.com
Opinion | I Came to Study Aging. Now I’m Trapped in ICE Detention.
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Simone Reber @simonereber.bsky.social · 12/05/2025
New insights in to the physical properties of the 🐸 #Xenopus cytoplasm! Great work @mctwo.bsky.social & @biswashere.bsky.social! Together with @gucklab.bsky.social & @vasilyzaburdaev.bsky.social 😍 @mpi-scienceoflight.bsky.social @mpiib-berlin.mpg.de www.biorxiv.org/content/10.1...
biorxiv.org
Hierarchical Heterogeneities in Spatio-Temporal Dynamics of the Cytoplasm
Understanding of the dynamics inherent to biological matter is crucial for illuminating the physical mechanisms underlying cellular processes. In this study, we employ bright-field differential dynamic microscopy (DDM) to investigate density fluctuations inherent in a cell-free model of eukaryotic cytoplasm. Our measurements reveal subdiffusive fractional Brownian motion and non-Gaussian displacement distributions, highlighting cytoplasmic heterogeneity. We introduce an empirical model that combines fractional Brownian motion with an inverse Gaussian distribution of diffusivities to describe the observed non-Gaussianity. Validated through Monte Carlo simulations, this model allows us to estimate the fractional diffusivity and exponent effectively. By altering macromolecular composition, the addition of energy, and assembly of a cytoskeleton, we identify three independent mechanisms that result in similar fractional exponents yet distinct diffusivities. We find that energy addition leads to non-stationary dynamics, in contrast to the stationary behavior observed under passive conditions. Presence of microtubules introduces a secondary dynamical timescale, which we describe using a two-state fractional Brownian motion model to differentiate between cytosolic and microtubule network associated contributions. Our findings demonstrate the effectiveness of DDM as a label-free tool for quantifying viscoelastic and heterogeneous properties of the cytoplasm and provide insights into how physical and biochemical factors, including cytoskeletal organization, govern subcellular dynamics. ### Competing Interest Statement The authors have declared no competing interest.
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Nikita Frolov 🇺🇦 @nikitaphysics.bsky.social · 10/05/2025
It's been a very stimulating conference, many thanks to the organizers for making it possible!
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Maxim Greenberg @maxvcg.bsky.social · 11/04/2025
The Americans are doing to Kseniia what the Russians did to Brittney Griner for having 0.7 grams of cannabis oil. Except no one is coming to negotiate her freedom and Harvard is sitting on their hands. I am so ashamed. Please share this story. www.nytimes.com/2025/04/11/s...
nytimes.com
She Worked in a Harvard Lab to Reverse Aging, Until ICE Jailed Her (Gift Article)
President Trump’s immigration crackdown ensnared Kseniia Petrova, a scientist who fled Russia after protesting its invasion of Ukraine. She fears arrest if she is deported there.
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