Reposted by Julien RouxDr. Katja Thieme (she/they) @katjathieme.bsky.social · 28/09/2026What do the researchers who work for Anthropic think about (1) having directed a machine to plagiarize other researchers' work, (2) posting a paper attaching their own names to these machine results, and (3) allowing the company to issue hype that goes far beyond the capacity of their results? 1145
Reposted by Julien Rouxc0nc0rdance @c0nc0rdance.bsky.social · 27/09/2026I'll save you the click-through: A lab at University of Copenhagen had been feeding draft manuscripts & data into "Claude Science" & then Anthropic announces a discovery that this lab made a year ago but hasn't published yet. It's plausible that Claude found the same signatures independently... 7253111
Reposted by Julien RouxMarc Robinson-Rechavi @marcrr.bsky.social · 28/09/2026I'm not writing in the NYT and I won't word it carefully: it's clear that AI companies are stealing researchers' work (and why wouldn't they? they steal artists' and journalists' work with no consequences), and I warned my group about it this morning. 01813
Reposted by Julien RouxAlessandro Crimi @alecrimi.bsky.social · 24/09/2026For #genomics #datasets, I often use these 4 portals: 🧬TCGA - www.cancer.gov/ccg/research... 🧬DepMap - depmap.org/portal/ 🧬1000 Genomes - www.internationalgenome.org 🧬recount3 - rna.recount.bio Are there better resources you use for genomics datasets? What am I missing? 012
Reposted by Julien RouxMwahahahahahadScientist @mads100tist.bsky.social · 18/09/2026AI slop wins the Nikon competition? 🫠 6247
Reposted by Julien RouxJeremy Reiter @reitergroup.bsky.social · 18/09/2026What in the world am I looking at here? @Nikon? www.nikonsmallworld.com/galleries/20...nikonsmallworld.comAbnormal beating of airway cilia from a child with Primary Ciliary Dyskinesia (PCD) | 2026 Small World in Motion CompetitionNing Xu - Abnormal beating of airway cilia from a child with Primary Ciliary Dyskinesia (PCD), a genetic disorder affecting respiratory function. 3413231
Julien Roux @julienroux.bsky.social · 11/09/2026Very good start of the #BaselSpatialOmicsSymposium today, with full auditorium and interesting talks! www.linkedin.com/posts/micros...linkedin.com#spatial | Microscopy Network BaselWow! It's amazing to see how the Basel Spatial Omics Symposium has grown in recent years. This year, we are holding the third edition. It initially started as a local Microscopy Network Basel event to... 161
Reposted by Julien RouxArnaud Krebs @arnaudkr.bsky.social · 10/09/2026EMBL QBMM is back this year with an outstanding line-up! Plenty of talks will be selected from submitted abstracts, with emphasis on junior scientists and representation across diverse fields. The abstract deadline is the end of this week, so don’t miss out! www.embl.org/about/info/c... 02312
Reposted by Julien RouxDepartment of Biomedicine🔬🧪 @biomedizin.unibas.ch · 10/09/2026🎉 Congrats to Hailey Kim and Mika Schneider, winner of the 2026 DBM Paper Prize for their study on EBV and autoreactive B cells in MS. And our Best Presentation Award goes to Dorssa Akbari! Read more: biomedizin.unibas.ch/en/newsdetai... #ResearchExcellence #DBMPaperPrize #BestPresentationAwardbiomedizin.unibas.chCongratulations to this year’s DBM Paper Prize winners!As every year, we celebrated the DBM Best Publication Award during our annual Summer Symposium today. This year, the award has a new name – the DBM Paper Prize – but its purpose remains the same: the ... 011
Reposted by Julien RouxPierre-Luc Germain @plger.bsky.social · 26/08/2026Sharing a new preprint about technical variation in (bulk/ #SingleCell ) #ATACseq and motif accessibility analyses, and methods to correct for them www.biorxiv.org/content/10.6... 1117
Reposted by Julien RouxDepartment of Biomedicine🔬🧪 @biomedizin.unibas.ch · 03/09/2026🏆 Two ERC Starting Grants for DBM researchers! Congratulations to Petya Apostolova and @dixon-lab.bsky.social, whose projects LIFE and NeuroCAN will explore new ways to understand and overcome cancer immune evasion. 🔗 Read more: biomedizin.unibas.ch/en/newsdetai... @erc.europa.eu @unibas.chbiomedizin.unibas.chERC Starting Grants Awarded to Two DBM ResearchersEach year, the European Research Council (ERC) awards Starting Grants to support outstanding early-career researchers in establishing ambitious and innovative research programs. We are delighted to an... 031
Reposted by Julien RouxMarc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 02/09/2026Hamed Najafabadi: GHT-Selex: in vitro profiling of TF binding, on genomic fragments instead of synthetic DNA -> allow analysis of genomic information. Results very similar to ChIPseq, with extra info on binding affinity from enrichment cycles. #ECCB2026 doi.org/10.1038/s41592-026-03177-9nature.comGHT-SELEX demonstrates unexpectedly high intrinsic sequence specificity and complex DNA binding of many human transcription factors - Nature MethodsGHT-SELEX—high-throughput SELEX with fragmented genomic DNA—shows that transcription factors can be rather particular about which genomic loci they bind, and that C2H2 zinc finger proteins often engage different fingers at different sites. 223
Reposted by Julien RouxBgee database @bgee.org · 01/09/2026If you're at #ECCB2026 and have questions about curated bulk and single-cell RNA-seq, members of the Bgee team (Frédéric Bastian, Anne Niknejad, Sébastien Moretti, @marcrr.bsky.social) and other scFAIR (sc-fair.org) participants are here and happy to speak with you. Don't hesitate to reach out!sc-fair.orgscFAIR 042
Reposted by Julien RouxMarc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 01/09/2026Malaspinas: most ancient T. pallidum genomes are from dates around Colombian contact. One was isolated from 5500 yr old remains of a person with no disease symptoms. It turned out to be a new subspecies, outgroup to all known subspecies. #ECCB2026 111
Reposted by Julien RouxRiccardo Percudani @percud.bsky.social · 31/08/2026“We not only have to share data, but also share the benefits of sharing data.” Powerful opening keynote by Jeremy Farrar at #ECCB2026 in Geneva — with no slides. 012
Reposted by Julien RouxTorsten Schwede @torstenschwede.bsky.social · 31/08/2026Looking forward to three days full of exciting science and inspiring conversations. #ECCB2026 073
Reposted by Julien RouxRob Waterhouse @rmwaterhouse.bsky.social · 31/08/2026A grand opening to #ECCB2026 in #Geneva today with president Guy Parmelin @sib.swiss #GenevaLovesData 094
Reposted by Julien RouxKatja @jaggakatja.bsky.social · 31/08/2026Excited that #ECCB26 is about to start! Looking forward to three days filled with exciting talks and poster presentations, interesting discussions and encounters, and, of course, catching up with colleagues from across the community. 054
Reposted by Julien RouxKelvin Lau @klausenhauser on 🙅♂️🐘🪡 @klausenhauser.bsky.social · 26/08/2026And I wake up to my friend sending me this. I think this is the highlight of the probe. It’s just a cut and paste world doing WB… 1114
Reposted by Julien RouxReese Richardson @reeserichardson.bsky.social · 25/08/2026A massive update: At least ~15 companies~ are selling scientists antibodies using faked validation data. We've documented 18,000+ manipulated images on 17,000+ products sold by leading laboratory suppliers including Thermo Fisher, Abcam, Santa Cruz Biotechnology, Millipore Sigma and Bio-Techne. 1/🧵 18454329
Reposted by Julien RouxBioconductor @bioconductor.bsky.social · 25/08/2026📢 We’re running a developer survey to better understand the needs and priorities of the community and help shape the future of Bioconductor. The survey is open until September 30 and takes approximately 15-30 minutes to complete. 📝 Survey link: bit.ly/4zPf6h4 We look forward to hearing from you!forms.gleBioconductor developer surveyThank you for taking the time to complete this Bioconductor developer survey. For the purposes of this survey, "developer" includes package developers as well as contributors involved in… 033
Reposted by Julien RouxAndrea Musacchio @andrea-musacchio.bsky.social · 23/08/2026www.science.org/doi/10.1126/... “MPIs operate on the Harnack principle: build an institute around a small group of exceptional scientists granted near-absolute autonomy. On paper, scientific paradise; in practice, junior scientists live entirely at the director’s pleasure.” Tranchant…science.orgIn (qualified) defense of the research project grantIn a debate that has been building for years, a growing coalition of reformers has concluded that the research project grant (RPG) approach used by many science funders in the United States and based ... 52010
Reposted by Julien RouxItai Yanai @itaiyanai.bsky.social · 24/08/2026How to do science in the age of AI. 0217
Reposted by Julien RouxErik van Nimwegen @erikvannimwegen.bsky.social · 21/08/2026Remember this? bsky.app/profile/did:... Rigorous visualization of the structure in your high-dimensional data. Fantastic work by @dhdegroot.bsky.social With help of the reviewers of Nat Biotech it is now updated, extended an officially published here: www.nature.com/articles/s41... 1/nnature.comBonsai reconstructs tree representations for distortion-free visualization and exploration of high-dimensional data - Nature BiotechnologyHigh-dimensional data are visualized through representation on tree structures. 110545
Reposted by Julien RouxMarc Robinson-Rechavi @marcrr.bsky.social · 06/08/2026Yes! I hate that we've had to put it up on our database websites. But the AI bots are impossible to manage otherwise, at least for a small team. 042
Reposted by Julien RouxRob Waterhouse @rmwaterhouse.bsky.social · 19/08/2026Tomorrow the exhibition moves from Parc des Bastions to Rotonde du Mont-Blanc, in #GenevaLovesData #Datarium #biodiversity @bmd-project.eu 021
Julien Roux @julienroux.bsky.social · 20/08/2026Very happy to see this now published! www.nature.com/articles/s41...nature.comRapid and long-lasting remodelling of the blood transcriptome following bariatric surgery - International Journal of ObesityInternational Journal of Obesity - Rapid and long-lasting remodelling of the blood transcriptome following bariatric surgery 060
Reposted by Julien RouxLucas Waltzer @lucaswaltzer.bsky.social · 17/08/2026Appalling string of misconducts at Marseille IHU . 64 publications retracted & 270 with expression of concern... What a glorious success Dr Raoult!link.springer.comFollow-up investigation of ethics approvals and regulatory compliance in publications from the IHU-Mi - Research Integrity and Peer ReviewBackground Following our previous investigation of 456 articles published by the IHU-Méditerranée Infection (IHU-Mi) institute in Marseille, France, subsequent editorial actions, institutional reviews... 114
Reposted by Julien RouxSholto David @sholtodavid.bsky.social · 06/08/2026A tool used to rephrase plagiarised text changed "final solution" to "mass killing of an ethnic group" in a chemistry paper. Now retracted thanks to a PubPeer user who spotted this. pubpeer.com/publications... 271037404
Reposted by Julien RouxOlivia Guest · Ολίβια Γκεστ @olivia.science · 31/07/2026🤠 youtu.be/BuiEVOSTbN4youtu.beGoogle kills AlphaFold. So much for AI curing cancerYouTube video by Pivot to AI 617565
Reposted by Julien RouxItai Yanai @itaiyanai.bsky.social · 31/07/2026Science funding has still not reached gender equality: "Projects led by male PIs received roughly twice the mean funding compared to female PIs." www.sciencedirect.com/science/arti... 01112
Reposted by Julien RouxThe Night Science Podcast @nightsciencepod.bsky.social · 22/06/2026🔥 New Night Science Podcast episode! What can comedy teach us about scientific discovery? With stand-up comedian and former research scientist Sarah Adelman, we discuss the surprising parallels between jokes and discoveries! open.spotify.com/episode/0zG2... podcasts.apple.com/us/podcast/n... 032
Reposted by Julien RouxItai Yanai @itaiyanai.bsky.social · 16/06/2026Fantastic idea Julien! @redpenblackpen.bsky.social, would you like to come on as a guest on the night science podcast? podcasts.apple.com/us/podcast/n...podcasts.apple.comNight ScienceNatural Sciences Podcast · Updated Weekly · Where do ideas come from? In each episode, scientists Itai Yanai and Martin Lercher explore science's creative side with a leading colleague. New episodes c... 131
Reposted by Julien RouxDenny Carter @dennycarter.bsky.social · 17/06/2026I guess one difference between Jim Crow then and Jim Crow now is that we have cool graphics to show how it's done. 262783743
Reposted by Julien RouxMarc Robinson-Rechavi @marcrr.bsky.social · 16/06/2026Super happy to see this out. 😎 031
Reposted by Julien RouxBioHackrXiv @biohackrxiv.fediscience.org.ap.brid.gy · 15/06/2026"Bioconductor Spatial Data and Image Analysis Hackathon" doi.org/10.37044/osf.io/9ej32_v1 "We report the outcomes of the Bioconductor Spatial Data and Image Analysis Hackathon, held in Venice, Italy in April 2026. Twenty-seven researchers and […] [Original post on fediscience.org] 076
Reposted by Julien RouxWolfgang Huber @wkhuber.bsky.social · 16/06/2026Many results, new or improved packages, and future directions in this report on the Bioconductor Spatial Data and Image Analysis Hackathon that took place in Venice in April 2026. osf.io/preprints/bi... 0212
Reposted by Julien RouxMarc Robinson-Rechavi @marcrr.bsky.social · 14/06/2026When the location of a conference is announced, can we take the habit of first highlighting accessibility by train rather than starting by highlighting airports? 042
Reposted by Julien RouxReese Richardson @reeserichardson.bsky.social · 06/06/2026Thermo Fisher now has a page up in response to our observations. They flatly deny that images were manipulated or fabricated while repeating that images were "optimized for presentation and clarity on the website", no lie, six times. www.thermofisher.com/us/en/home/l...thermofisher.com 1917577
Reposted by Julien RouxTuomas Borman @tuomasborman.bsky.social · 03/06/2026We are live!!! The program starts at 9 in Finnish time. Watch European Bioconductor Conference for free: utu.zoom.us/j/62224935664 #EuroBioC2026 #Bioconductorlnkd.inLinkedInThis link will take you to a page that’s not on LinkedIn 001
Reposted by Julien RouxTschopp Lab @tschopplab.bsky.social · 19/05/2026Now accompanied by a lovely write-up from our communications office @unibas.ch - thanks @angelikajacobs.bsky.social 🙏 ! : www.unibas.ch/en/News-Even...unibas.chYou are what you eat: how diet drives evolutionA University of Basel study shows how different diets shape the evolution of intestinal cells in cichlid fishes. 294
Reposted by Julien RouxMarc Robinson-Rechavi @marcrr.bsky.social · 01/06/2026Did I submit 3 papers or revisions in the last hour? Maybe. When projects end, it's sad to see people go, but great to see results come out. Find all of our work at @biorxiv-evobio.bsky.social @biorxiv-genomic.bsky.socialtinyurl.com 031
Reposted by Julien RouxReese Richardson @reeserichardson.bsky.social · 28/05/2026TL;DR: We've identified more than 100 cases of apparent manipulation in Thermo Fisher Scientific's antibody verification data. @sholtodavid.bsky.social @johanduchene.bsky.social reeserichardson.blog/2026/05/28/h...reeserichardson.blogHow much of Thermo Fisher’s antibody data has been manipulated?We’ve documented more than 100 instances of apparent data manipulation in Thermo’s catalog 23591312
Reposted by Julien RouxYoav Gilad @ygilad.bsky.social · 04/04/2026Beyond the mean: genetic control of gene expression fidelity and dispersion www.biorxiv.org/content/10.6...biorxiv.org 032
Julien Roux @julienroux.bsky.social · 12/05/2026Finally found time to try mapping/demultiplexing a 10X Flex dataset (v1) using STARsolo github.com/alexdobin/ST... It's quite a versatile tool and we've been using for Chromium 10X 3'/5', w/ and w/o ADT/HTOs, PARSE-seq, BD Rhapsody, even for bulk RNA-seq with BRB-seq, so I wanted to give it a try!github.com 120
Reposted by Julien RouxStevie Ped @smped.bsky.social · 12/05/2026Very pleased to be hosting this today. Two great speakers & a chance for the Bioconductor community throughout the Asia-Pacific to come together. Registrations are still open if you're interested in #rstats package development and bioinformatics 🧬 🖥️ 4pm AEST with relevant time zones on the site 131
Reposted by Julien RouxRob Patro @robp.bsky.social · 11/05/2026Just grab the latest: * simpleaf (github.com/COMBINE-lab/...; also available via bioconda) or * cyto (github.com/arcinstitute...; preprint here: www.biorxiv.org/content/10.6..., not my work, but the tool seems great and the devs are very solid) And you're off to the (much faster) races! 2/2github.comGitHub - COMBINE-lab/simpleaf: A rust framework to make using alevin-fry even simplerA rust framework to make using alevin-fry even simpler - COMBINE-lab/simpleaf 031
Reposted by Julien RouxRob Patro @robp.bsky.social · 11/05/2026This is a very cool demonstration of the possibilities of 10x Flex link.springer.com/article/10.1...! But did you know that you can get near identical results MANY TIMES faster than CellRanger by processing flex data with piscem/alevin-fry or cyto? Both highly efficient & fully, truly open source?/2link.springer.com10 × Genomics Flex Gene Expression is a powerful tool for single-cell transcriptomics of xenografts models - Genome BiologyThe 10 × Genomics Flex Gene Expression protocol is a probe-based method that profiles fixed or frozen material, simplifying sample handling before scRNA-seq. Although probes exist only for human and m... 193