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Marc Robinson-Rechavi

@marcrr.ecoevo.social.ap.brid.gy
503 followers 10 following 981 posts

Posts mine alone, in English (mostly) & French. #Evolution #Bioinformatics #openaccess #EDI. Director of @dee_unil and group leader at @SIB. He/Him. PI of @bgeedb, of […] 🌉 bridged from ⁂ ecoevo.social/@marcrr, follow @ap.brid.gy to interact

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Reposted by Marc Robinson-Rechavi
Henrik Schönemann @lavaeolus.fedihum.org.ap.brid.gy · 13/10/2026
Very cool idea! #alt4you Notice on a Website, stating: "Signal collapse If you write to me, please consider that I now receive an abundance of messages which appear to be well written and well researched inquiries by people who have spent a lot of time reading my website and reviewing my […]
fedihum.org
Original post on fedihum.org
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 12/10/2026
Welcome to Lily Fogg wholl be joining our group @dee_unil to study clownfish evolution! 🐠 (news in French) www.unil.ch/news/fr/1791541259656
unil.ch
Quatre nouvelles forces pour la recherche à la FBM grâce aux bourses Ambizione
En 2025, quatre scientifiques se sont vu·es recompensé·es par une bourse Ambizione du Fonds national suisse, leur permettant de rejoindre la communauté scientifique de la Faculté de biologie et de médecine (FBM) de l’Unil. Les subsides ont été attribués à Lily Fogg, Thomas Hitchcock, Alice Horisberger et Elisa Rioja Blanco.
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Reposted by Marc Robinson-Rechavi
Elizabeth Jacobs, PhD @elizabethjacobs.bsky.social · 10/10/2026
This is a disaster. The ethics committee in Denmark that approved the Guinea-Bissau study which will withhold the birth dose of HepB vaccine “had never considered medical studies before but it changed the rules in order to vote on this one”. Four members of the committee have resigned in protest.
theguardian.com
Controversial vaccine trial touted by RFK Jr gets go-ahead in Guinea-Bissau
Recommended dose of hepatitis B vaccine will be withheld from thousands of newborns by Danish researchers
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 09/10/2026
End of Nobel week: ♂♂♂♂♂♂♀♀ with a clear divide STEM / non-STEM
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Reposted by Marc Robinson-Rechavi
Rebecca Sear @rebeccasear.bsky.social · 08/10/2026
A new Handbook of Evolutionary Psychology has just been published, in which it is claimed that the human species is polytypic: not only is race biologically meaningful but the races are distinct enough to be considered subspecies. Published by Elgar. In 2026.
Chapters in Part III take stock of the current state of evolutionary psychology, by casting wider attention to other social and behavioral sciences and assessing the field's influence on them. In Chapter 11 ('Evolutionary psychology and anthropology'), Heiner Rindermann identifies three major forces that oppose scientific anthropology: Religion, National Socialism ('Nazism'), and woke leftist ideology. Ironically, in this sense, woke left ideologues, who include most anthropologists themselves, geneticists, and other university academics, share much in common with the Nazis in their common opposition to scientific anthropology.
Rindermann's extensive review of the literature leaves no doubt that humans are genetically polytypic and contain different biological races or 'subspecies' At the end of the chapter, Rindermann delivers devastating rebuttals to all potential arguments against the notion of races/subspecies among humans.
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 08/10/2026
Day 4 of Nobel week: ♂♂♂♂♂♂♀😅
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 07/10/2026
Cool work on slow evolving lineages, aka "living fossils". I like the contrast between the morphologically conserved lineages and control species-poor lineages. Sad not to see amphioxus included though. www.biorxiv.org/content/10.64898/20… #EvoDevo #Phylogenetics
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 07/10/2026
Day 3 of Nobel week: ♂♂♂♂♂♂
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 06/10/2026
When you write "Dead person" instead of "Dear person", the spell check doesn't catch it. 😬
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 06/10/2026
Day 2 of Nobel week: ♂♂♂♂
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 05/10/2026
WTFL is basically CC0 after a few drinks.
mastodon.social
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 04/10/2026
#SilentSunday
Mountain view. Foreground a ridge going away from the viewer. Background high mountains.
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 01/10/2026
I like it better when my mountains are not top international news 😢
Front page of The Guardian app, with an image of a glacier landscape with melting ice, highlighting a large crevice with deep blue water visible. The news headline is 
‘Explosion of melt rates’: 20% of Swiss glaciers lost in five years
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 30/09/2026
Two grants submitted in the last month, both organic home-grown, hand-written, with no additives. If you review them, criticize the science all you want, but know that I wrote them without AI. Now to answer emails.
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 28/09/2026
I'm not writing in the NYT and I won't word it carefully: it's clear that AI companies are stealing researchers' work (and why wouldn't they? they steal artists' and journalists' work with no consequences), and I warned my group about it this morning.
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Reposted by Marc Robinson-Rechavi
Tom Gauld @tomgauld.bsky.social · 24/09/2026
My latest @newscientist.com cartoon. many more here: www.newscientist.com/author/tom-gauld/
Image: A graph with lots of red dots clustered together in a curve. The are all looking upwards at a single red dot wearing sunglasses. 

Caption: Mike was an outlier and would probably be excluded from the study, but all the other data points secretly thought he was really cool.
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 20/09/2026
#SilentSunday
Photo of a waterfall in the mountains, with mountains and cliffs in the background
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 15/09/2026
Our department @dee_unil is hiring an associate professor (tenured) in Behavioral ecology and cultural evolution. Diverse profiles welcome! Deadline end of September […]
ecoevo.social
Original post on ecoevo.social
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 14/09/2026
Lourd est le parpaing du lundi sur la tartelette aux fraises de la semaine
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 13/09/2026
#SilentSunday
View of a ragged mountain ridge with pine trees in the foreground
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 11/09/2026
Disappointed by the lack of answers on Bluesky to this good question, any #PopGen colleagues willing to give an answer here?
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Reposted by Marc Robinson-Rechavi
tante @tante.tldr.nettime.org.ap.brid.gy · 09/09/2026
prospect.org/2026/09/09/anthropic-a… "Job postings and interviews with senior security officials at Anthropic show that the frontier AI lab is building out an extensive monitoring system to keep tabs on activists who oppose the […]
tldr.nettime.org
Original post on tldr.nettime.org
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Reposted by Marc Robinson-Rechavi
jonny (nonvenomous) @jonny.neuromatch.social.ap.brid.gy · 08/09/2026
OpenAI claims that they used 300 billion output tokens from a swarm of ~10,000 concurrent instances of an internal model that is almost certainly larger and more expensive to run than GPT-6. That's the total token output, including exploring related problems, which, along with spying on other […]
neuromatch.social
Original post on neuromatch.social
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Reposted by Marc Robinson-Rechavi
jonny (nonvenomous) @jonny.neuromatch.social.ap.brid.gy · 08/09/2026
> The route to the Clay problem through a smooth force, options c and d in Fefferman’s statement of the problem, is the route Luis and Diego opened and the one Levent and I had quietly chosen to attack. Almost nobody else I know of was working on it. It is not the direction one arrives at in a […]
neuromatch.social
Original post on neuromatch.social
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 04/09/2026
From this perspective on AI and "peer" review, I'm surprised to actually not see any increase in the rate of growth of articles with LLMs? www.science.org/content/article/can… #AcademicPublishing #PeerReview #AI
Bar graph of the number of scientific publications per year since 1990. It shows a continuous increase. The introduction of ChatGPT in 2022 is highlighted.
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 04/09/2026
23 organisations including Swissuniversities sign a joint letter calling for Switzerland to participate in Erasmus+ www.swissuniversities.ch/en/news/ap…
swissuniversities.ch
Appeal for Erasmus+: 23 organisations sign a joint letter
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 04/09/2026
The main #ECCB2026 conference may be over, but today lots of great people are meeting to discuss single-cell standards and collaborations: Single-cell and spatial data FAIRification, community standards and training organised by @fbastian @SIB & @elixir_europe […]
ecoevo.social
Original post on ecoevo.social
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 02/09/2026
Rufus Daw: I'm glad to hear that human cell cluster annotation remains gold standard 🤓 #ECCB2026 doi.org/10.1093/bioinformatics/btag…
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 02/09/2026
Eric Haoran Huang: there are >40 methods to study single-cell time-series data. Benchmarks are focused on gene expression forecasting. What about perturbation or other applications? #ECCB2026
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 02/09/2026
Hatice Ulku Osmanbeyoglu: STAN integrates gene expression, regulatory priors and spatial transcriptomics to generate spot-specific TF activity maps. #ECCB2026 doi.org/10.1093/nar/gkaf1473
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 02/09/2026
Hamed Najafabadi: GHT-Selex: in vitro profiling of TF binding, on genomic fragments instead of synthetic DNA -> allow analysis of genomic information. Results very similar to ChIPseq, with extra info on binding affinity from enrichment cycles. #ECCB2026 doi.org/10.1038/s41592-026-03177-9
nature.com
GHT-SELEX demonstrates unexpectedly high intrinsic sequence specificity and complex DNA binding of many human transcription factors - Nature Methods
GHT-SELEX—high-throughput SELEX with fragmented genomic DNA—shows that transcription factors can be rather particular about which genomic loci they bind, and that C2H2 zinc finger proteins often engage different fingers at different sites.
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 01/09/2026
Quake: challenge of creating a definition of cell types from 1st principles. Pareto optimality of trade-offs between optimal solutions constrains trait space -> gene expression as traits for cell types. #ECCB2026 doi.org/10.1073/pnas.2530194123
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 01/09/2026
Keynote speaker Stephen Quake has just joined @ethzurich 😮 #ECCB2026 bsse.ethz.ch/news-and-events/d-bsse…
bsse.ethz.ch
Stephen Quake becoming faculty member
At its meeting on 20 and 21 May 2026 and upon application of Joël Mesot, President of ETH Zurich, the ETH Board appointed Stephen Quake, currently Professor at Stanford University, USA, as Full Professor of Biophysics and Biomedical Engineering at the D-BSSE and faculty member of the Basel Research Center for Child Health (BRCCH). A warm welcome, Stephen!
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 01/09/2026
Niklas Kempynck: CREsted is a Python package which analyses scATAC-seq all the way to enhancer code analysis and design. #ECCB2026 doi.org/10.1038/s41592-026-03057-2
nature.com
CREsted: modeling genomic and synthetic cell-type-specific enhancers across tissues and species - Nature Methods
CREsted is an efficient and user-friendly toolbox for analysis, modeling and design of cell-type-specific enhancers across diverse species.
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 01/09/2026
Timothy Warwick: Xist and Neat1 show the role of nuclear-localised RNAs. Old assays detected 1-to-all RNA-DNA interactions, now we can do all-to-all! #ECCB2026
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 01/09/2026
#ECCB2026 keynote: Anna-Sapfo Malaspinas Different subspecies of Treponemal pallidum are responsible for 4 diseases: syphilis, bejel, yaws and pinta. Paleopathology shows some pre-Colombian evidence of syphilis in the Old World, but it is very uncertain and the conclusions are debated.
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 01/09/2026
#ECCB2026 started with moving tributes to the too many great computational biologists we lost in the last year: Amos Bairoch Peer Bork Phil Bourne Craig Venter
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 31/08/2026
Kudos to #ECCB2026 for highlighting Mastodon and Bluesky but not the Nazi bar network. @SIB
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 31/08/2026
Peiying Cai: DESpace2 allows to discover genes which are differentially expressed in space (spatial transcriptomics) in different ways across conditions. Cool work from @markrobinsonca lab @SIB #ECCB2026
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Reposted by Marc Robinson-Rechavi
Dr. Serge Zaka @sergezaka.bsky.social · 31/08/2026
Si l’on compare 2026, 2022, 2003 et 1976 en termes d’intensité maximale de la sécheresse (c’est-à-dire le niveau minimal d’eau disponible pour les plantes atteint au cours de l’année) il n’y a pas photo : 2026 se démarque très largement des autres années (première carte). 9/10
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Dr. Serge Zaka @sergezaka.bsky.social · 31/08/2026
La pluie est revenue depuis 10 jours. Comment évolue la sécheresse depuis ? C'est le but de ce thread. A dérouler et partager🧶. 4/10
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Dr. Serge Zaka @sergezaka.bsky.social · 31/08/2026
L’été 2026 est, de loin, le + chaud jamais observé en France, devançant 2003 de 0,8°C. Seulement 5 jours sous les normales, contre 86 au-dessus. Il laisse derrière lui une agriculture en lambeaux et des écosystèmes à l’agonie. 1/10
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 31/08/2026
Md Istiaq Ansari: new SPIDER method uses cell-type information (that spatial transcriptomics lacks) from scRNAseq of the same tissue. The trick is to make pseudo-spots from the scRNAseq, aligned with read spots from spatial transcriptomics. #ECCB2026 doi.org/10.1093/bioinformatics/btag…
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Reposted by Marc Robinson-Rechavi
Jerven Bolleman @jervenbolleman.genomic.social.ap.brid.gy · 31/08/2026
#eccb2016 @SIB member Anais Mottaz talking about "enabling federated genomic data discovery and analysis with GA4GH standards across ELIXIR".
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 31/08/2026
Timofey Prodanov: Locityper calls haplotypes if they are already known to exist (i.e., human genome) doi.org/10.1038/s41588-025-02362-4 #ECCB2026
nature.com
Locityper enables targeted genotyping of complex polymorphic genes - Nature Genetics
Locityper is a general-purpose genotyper that can efficiently genotype and analyze a diverse set of genes, such as hyperpolymorphic HLA genes, using both short-read and long-read whole-genome sequencing data.
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 31/08/2026
Eyes Robson: GUANinE is a benchmark of genomic sequence-to-function. Supervised methods do much better than unsupervised (language models) on open chromatin. OTOH language models work well for discovering sequence onservation. #ECCB2026 doi.org/10.1093/bioinformatics/btag…
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 31/08/2026
Xian Yu presents improvement in indel calling in Clair3, a leading software for variant calling in long read data github.com/HKU-BAL/Clair3 #ECCB2026
github.com
GitHub - HKU-BAL/Clair3: Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling
Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling - HKU-BAL/Clair3
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Reposted by Marc Robinson-Rechavi
Egon Willigh☮gen 🟥 @egonw.mastodon.social.ap.brid.gy · 31/08/2026
RE: social.edu.nl/@tgx_um/1171894877205… if you, like me, are not there in person, you can always follow #eccb2026 with a fediwall, like this one: guide.biohackrxiv.org/fediwall/?tag…
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Reposted by Marc Robinson-Rechavi
Jerven Bolleman @jervenbolleman.genomic.social.ap.brid.gy · 31/08/2026
#UniGe Prof Leuba recounts the start of #UniProt with #Swiss-Prot in 1986 (where I work). How this is an example of making data understandable, and how quality is a work in progress. This is a requirement for all scientific fields. This is not a technical question: but of scientific quality and […]
akademienl.social
Original post on akademienl.social
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Reposted by Marc Robinson-Rechavi
Jerven Bolleman @jervenbolleman.genomic.social.ap.brid.gy · 31/08/2026
Looking forward how #eccb connects scientists with the wider public. I think that is a really important, Scientists should not be hermits but participate widely in society.
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