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Joe Wade

@joe-wade.bsky.social
84 followers 73 following 8 posts

PI at the Wadsworth Center in Albany, NY wadsworth.org/senior-staff/joseph-w…

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Reposted by Joe Wade
Michael Glickman @michaelglickman.bsky.social · 07/09/2026
Interesting article about SigD/RsdA in M. abscesus. Some over lap with TB regulon and function, but also many differences. It will be interesting to see if the proteolytic processing of RsdA is also by a Rip1 S2P. Nice work! 🦠https://dx.plos.org/10.1371/journal.pgen.1012286
dx.plos.org
The SigD regulon of Mycobacterium abscessus determines cell envelope composition and antibiotic susceptibility
Author summary Mycobacterium abscessus is an increasingly important bacterial pathogen that causes difficult-to-treat infections because it is naturally resistant to many antibiotics. A major contribu...
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Reposted by Joe Wade
Rita Tamayo @ritatamayo.bsky.social · 13/08/2026
New from the lab--C. diff uses phase variation to initiate infection in a virulent state but that phenotype presents a fitness cost as disease develops. A programmed reset mechanism primes Clostridioides difficile virulence at the onset of infection | Science Advances www.science.org/doi/10.1126/...
science.org
A programmed reset mechanism primes Clostridioides difficile virulence at the onset of infection
Clostridioides difficile is a major cause of antibiotic-associated diarrhea. This pathogen produces toxins essential for disease and flagella that promote intestinal colonization. Flagella and toxins ...
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Siân Owen @sianowen.bsky.social · 06/08/2026
Some good new to share: my lab was recently awarded an NIH R35/MIRA award to continue our work on conjugative plasmids and plasmid-dependent phages! 🥳 🫶NIH🫶 www.wadsworth.org/news/nih-gra...
wadsworth.org
NIH grant awarded to Wadsworth Center scientist to advance research on antimicrobial resistance | New York State Department of Health, Wadsworth Center
Dr. Siân Owen, a Principal Investigator and Research Scientist at the Wadsworth Center, has been awarded a highly competitive five-year, $1.97 million Maximizing Investigators' Research Award (MIRA) f...
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Andrew Darwin @durkdarwin.bsky.social · 07/08/2026
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Joe Wade @joe-wade.bsky.social · 24/06/2026
New preprint from our lab, in collaboration with the Santiago/Ruiz-Perez group at UVA. We found a plasmid-encoded DNA-binding protein that preferentially binds its own plasmid! www.biorxiv.org/content/10.6... Thread:
biorxiv.org
A plasmid-encoded H-NS protein selectively binds its own plasmid
H-NS is an abundant nucleoid-associated protein found in Enterobacterales species. Some conjugative plasmids encode H-NS homologues, which are thought to facilitate plasmid maintenance and reduce the ...
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Reposted by Joe Wade
Nilesh Banavali @nilesh-banavali.bsky.social · 01/05/2026
Our paper is out today as an ASAP web publication in Biochemistry! Congrats to Swati Manjari and @calebmallery.bsky.social! pubs.acs.org/doi/10.1021/...
pubs.acs.org
How Medically Important Antimicrobials Bind to the 30S Ribosomal Subunit in a Bacterial Pathogen
Ribosomes translate the genetic code in mRNA to synthesize proteins in all living organisms. Decoding of mRNA occurs in the small subunit of the ribosome and is mediated by tRNA anticodons. Regions ne...
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Reposted by Joe Wade
Nature Microbiology @natmicrobiol.nature.com · 16/04/2026
Out Now! A bacterial CARD–NLR-like immune system controls the release of gene transfer agents #MicroSky
go.nature.com
A bacterial CARD–NLR-like immune system controls the release of gene transfer agents
Nature Microbiology, Published online: 16 April 2026; doi:10.1038/s41564-026-02316-4An immunity-like system functions as a lysis control hub to promote gene transfer agent particle release from host bacterial cells, suggesting that bacterial immune systems may be co-opted to promote horizontal gene transfer.
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Paul Hoskisson 🧫 🦠🐸 @paulhoskisson.bsky.social · 10/04/2026
Really cool work from @mblokesch.bsky.social et al Competence-mediated DNA uptake diversifies Vibrio cholerae sedentary chromosomal integrons www.science.org/doi/10.1126/...
science.org
Competence-mediated DNA uptake diversifies Vibrio cholerae sedentary chromosomal integrons
Bacteria often survive viral attack and environmental stress by sharing genes that enhance their defenses. The cholera pathogen Vibrio cholerae carries a sedentary chromosomal integron (SCI), a genetic element containing hundreds of mostly promoterless ...
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Mark Mandel @markjmandel.bsky.social · 08/04/2026
Check out this squid-vibrio postdoc position at Penn State with my colleague Tim Miyashiro, especially if you have a background in proteomics/metabolomics. psu.wd1.myworkdayjobs.com/PSU_Academic...
psu.wd1.myworkdayjobs.com
Postdoctoral Position - BMB
APPLICATION INSTRUCTIONS: CURRENT PENN STATE EMPLOYEE (faculty, staff, technical service, or student), please login to Workday to complete the internal application process. Please do not apply here, a...
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Stacy Federick @sfederick.bsky.social · 01/04/2026
This thread is about NIH taking away incentives to serve. In-person networking was a huge (and primary) incentive IMO. The irony is that JB wants to undo all COVID impacts, remote work, etc. Meeting in person again would actually be a positive change.
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Jon Paczkowski🌹 @paczkowskilab.bsky.social · 01/04/2026
A true labor of love for @calebmallery.bsky.social is out now in PLOS Pathogens: a review article where we highlight current and emerging examples of key protein-protein interactions with LuxR-type receptors that control community behaviors and pathogenesis. journals.plos.org/plospathogen...
journals.plos.org
Expanding the LuxR-type receptor functional repertoire: Protein-protein interactions in quorum sensing regulation
Quorum sensing (QS) enables bacteria to coordinate gene expression in response to population density, with LuxR-type transcription factors playing a central role in this process for many Gram-negative...
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Tracy Palmer @proftracypalmer.bsky.social · 27/03/2026
And a big shout out to Kieran Bowran whose bioinformatics analysis suggests there are multiple toxins out there
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Jeremy Berg @jeremymberg.bsky.social · 27/03/2026
Exciting News! Grant-witness.us now has dynamic funding curves like mine for NIH available. grant-witness.us/funding_curv... 1/2
grant-witness.us
NIH Funding Curves (FY 2021 - 2026) – Grant Witness
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Grainger Lab @graingerlab.bsky.social · 24/03/2026
Two post-doctoral positions open in our lab. We're looking for people with expertise in molecular microbiology and/or genome-scale tools. Initially 3 yrs, posts could be extended for upto 8 yrs. If you'd like to know more about us take a look at www.graingerlab.com www.jobs.ac.uk/job/DQY475/r...
jobs.ac.uk
Research Fellow (Postdoctoral) at University of Birmingham
Explore an exciting academic career as a Research Fellow (Postdoctoral). Don't miss out on other academic jobs. Click to apply and explore more opportunities.
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Reposted by Joe Wade
Filipa Trigo da Roza @filipatr.bsky.social · 20/03/2026
New preprint alert!!! 🚀🤓 We are very happy to finally share this with the world — the result of seven years of work and a new tool to study integrons and discover new functions encoded in these bacterial platforms. If you want to know more, here is a thread 🧵 www.biorxiv.org/content/10.6...
biorxiv.org
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Nilesh Banavali @nilesh-banavali.bsky.social · 17/03/2026
Enjoyed presenting my work at the 2026 Upstate RNA symposium and learning much from the other posters and talks. Thanks to the organizers!
Me standing in front of my poster at the Upstate RNA symposium
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Reposted by Joe Wade
Kumaran Ramamurthi @ramamurthilab.bsky.social · 13/03/2026
@felixrl.bsky.social reported that PcdA mediates orthogonal cell division in #Staphylococcus aureus: www.nature.com/articles/s41.... But what’s the point? Well, forming staphylococcal abscess communities to evade host immune responses requires this mode of division: www.biorxiv.org/cgi/content/...
nature.com
PcdA promotes orthogonal division plane selection in Staphylococcus aureus - Nature Microbiology
PcdA interacts with DivIVA and FtsZ, promoting Z-ring formation and division plane selection in Staphylococcus aureus, which increases virulence in mice and reduces sensitivity to cell-wall-targeting ...
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Kranzusch Lab @kranzuschlab.bsky.social · 05/03/2026
@nitzantal.bsky.social @romihadary.bsky.social @soreklab.bsky.social use structure prediction and in silico binding site analysis to discover viral immune evasion proteins! Exciting for our lab @reneechang.bsky.social @riveralopz.bsky.social to help with this project. www.science.org/doi/10.1126/...
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Sternberg Lab @sternberglab.bsky.social · 04/03/2026
Out now! In collaboration with Leifu Chang, we uncover the molecular and structural underpinnings of CRISPR-Cas12f-like RNA-guided transcription systems! Links to the published articles: tinyurl.com/55kpavet tinyurl.com/sk6djwx3 Previous thread for the preprint: bsky.app/profile/did:...
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Peter Fineran @peterfineran.bsky.social · 04/03/2026
New post-doctoral research position in my phage-host interactions (Phi) laboratory in @otagomicroimmuno.bsky.social at @universityofotago.bsky.social New Zealand. The project is focused on defences against jumbo phages. Please share and if interested apply using the link in the comments.
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Siân Owen @sianowen.bsky.social · 23/02/2026
We’re hiring a Microscopy Core Director at the Wadsworth Center! It's a state position (job stability & PENSION!) in a uniquely academic, research-driven environment 😎 Please share 🙏 statejobs.ny.gov/public/vacan...
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Siân Owen @sianowen.bsky.social · 19/02/2026
Happy 125th birthday to the Wadsworth Center, and New York State Department of Health! Established on this day in 1901, just 17 years after the publication of Koch's postulates
Wadsworth Center staff in front of the old laboratory on Yates St., Albany, NY. January 1915
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 11/02/2026
Plasmids weaponize conjugation to eliminate non-permissive recipients www.biorxiv.org/content/10.64898/20…
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Grainger Lab @graingerlab.bsky.social · 06/02/2026
@ewarman.bsky.social has followed up on her discovery of bidirectional promoters in bacteria by defining their basic rules for regulation and links to gene expression noise... academic.oup.com/nar/article/...
academic.oup.com
Bidirectional promoters in Escherichia coli: regulatory rules and implications for gene expression noise
Abstract. In prokaryotes, bidirectional promoters are pseudo-symmetrical DNA sequences that stimulate divergent transcription. Ubiquitous, and far more lik
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 28/01/2026
Actuation of CRP activating region 3 by acetylation modulates V. cholerae sugar utilization and virulence www.biorxiv.org/content/10.64898/20…
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Allison Lopatkin, PhD @ajlopatkin.bsky.social · 27/01/2026
Big week: welcomed a new baby boy Harris Lopatkin, AND our PlasAnn paper is finally out: academic.oup.com/nar/article/... (obviously the first more important than the second 🥰). Currently on leave but if anyone has the need to annotate large plasmids, go check it out!
academic.oup.com
PlasAnn: a curated plasmid-specific database and annotation pipeline for standardized gene and function analysis
Abstract. Conjugative plasmids are key drivers of bacterial adaptation, enabling the horizontal transfer of accessory genes within and across diverse micro
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Tiffany Taylor @taylorlabgroup.bsky.social · 23/01/2026
New Perspective out in Advanced Science 🎉 in collaboration with @alanrice.ie for @uniofbath.bsky.social 60th anniversary special issue. advanced.onlinelibrary.wiley.com/doi/10.1002/... We review nearly a decade of work asking: how do gene regulatory networks rewire during evolution? 🧫🧵
advanced.onlinelibrary.wiley.com
Transcription Factor Promiscuity Drives Regulatory Rewiring and Evolvability in Gene Networks in Bacteria
This special issue marking the University of Bath's 60th anniversary offers an opportunity to reflect on nearly a decade of research into the evolution of gene regulatory networks (GRNs) from members...
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Rock Lab @rocklabtb.bsky.social · 17/01/2026
Congrats @regolab.bsky.social! www.pnas.org/doi/10.1073/...
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 11/01/2026
Phase variable colony morphotypes of Clostridioides difficile elicit distinct host responses during acute infection www.biorxiv.org/content/10.64898/20…
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Wiep Klaas Smits (ExpBac/CMAT) @smitslab.bsky.social · 02/01/2026
A single DNA methylation site regulates cell fate during Clostridioides difficile sporulation www.biorxiv.org/content/10.6...
biorxiv.org
A single DNA methylation site regulates cell fate during Clostridioides difficile sporulation
DNA methylation is a widespread phenomenon in bacteria that can regulate gene expression, although the mechanisms underlying this epigenetic regulation are often poorly understood. In Clostridioides d...
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Reposted by Joe Wade
Josy ter Beek @josyterbeek.bsky.social · 30/12/2025
📣New preprint with @rberntsson.bsky.social👇We overturn the long-standing view that Gram-positive bacteria lack conjugative pili! We identify pili-forming proteins in a wide range of bacteria and show they're essential for the spread of #antibioticresistance #AMR 🧵1/6 www.biorxiv.org/content/10.6...
biorxiv.org
Pili are essential for conjugation also in many Gram-positive bacteria
Type IV secretion systems (T4SS) enable the spread of antibiotic resistance and other virulence factors. In Gram-positive bacteria, T4SSs have long been thought to lack VirB2-like proteins that form c...
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Molecular Microbiology Editors @molecularmicro.bsky.social · 02/07/2025
Tiffany Zarrella et al. provide new insights into the role of the bacterial second messenger cyclic di-adenosine monophosphate (c-di-AMP) in maintaining cell envelope homeostasis in Streptococcus pneumoniae. #MicroSky #cyclic-di-AMP onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
Cyclic Di‐AMP Affects Cell Membrane Integrity of Streptococcus pneumoniae
When Streptococcus pneumoniae produces low amounts of the second messenger cyclic di-AMP (c-di-AMP), they do not survive in the presence of competence-stimulating peptide (CSP), which is used for tra...
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Nilesh Banavali @nilesh-banavali.bsky.social · 26/12/2025
1/ Our new preprint is out on biorxiv on how antibiotics bind to bacterial 30S subunits, please repost. #ribosome #antibiotics #microsky #rnasky doi.org/10.64898/202...
doi.org
How medically important antimicrobials bind to the 30S ribosomal subunit in a bacterial pathogen
Ribosomes translate the genetic code in mRNA to synthesize proteins in all living organisms. Decoding of mRNA occurs in the small subunit of the ribosome and is mediated by tRNA anticodons. Regions ne...
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Reposted by Joe Wade
bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 20/12/2025
High-throughput transposon mutagenesis defines the essential genome of diverse phages www.biorxiv.org/content/10.64898/20…
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Sahar Melamed @saharmelamed.bsky.social · 19/12/2025
Do viruses use RNA to rewire bacteria? Yes! In our paper in @cp-molcell.bsky.social RIL-seq reveals interkingdom RNA interactions during λ infection. Phages don’t just encode proteins, they use small RNAs to hijack bacterial replication and fine-tune infection. #RNA #Phage doi.org/10.1016/j.mo...
cell.com
Phage-encoded small RNA hijacks host replication machinery to support the phage lytic cycle
Using RIL-seq, Silverman et al. map the RNA interactome of E. coli during phage lambda infection and uncover a conserved phage-encoded sRNA that activates host replication machinery. Their findings re...
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Sarah Svensson @campy-bara.bsky.social · 14/12/2025
RNA–RNA interactome approaches provide in vivo evidence for a critical role of the Hfq rim face in sRNA–mRNA pairing url: academic.oup.com/nar/article/...
academic.oup.com
RNA–RNA interactome approaches provide in vivo evidence for a critical role of the Hfq rim face in sRNA–mRNA pairing
Abstract. Most bacterial small regulatory RNAs (sRNAs) modulate gene expression by forming complementary base pairs with target messenger RNAs (mRNAs), dep
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I-75 Scientist @flscitriguy.bsky.social · 11/12/2025
I think some folks might be happy to see this. NIGMS MIRA R35 for EI/NI has been published. PAR-26-121 files.simpler.grants.gov/opportunitie...
files.simpler.grants.gov
PAR-26-121: Maximizing Investigators' Research Award (MIRA) (R35 - Clinical Trial Optional)
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Joe Wade @joe-wade.bsky.social · 11/12/2025
We’re hiring! We’re looking for researchers who use AI/machine learning to study infectious disease. The position is at the University at Albany, in the Biomedical Sciences Dept, which has very close ties to the Wadsworth Center. albany.interviewexchange.com/jobofferdeta...
albany.interviewexchange.com
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Nilesh Banavali @nilesh-banavali.bsky.social · 09/12/2025
Assistant Professor Biomedical Sciences AI position available. Read details and apply at: albany.interviewexchange.com/jobofferdeta...
albany.interviewexchange.com
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Jon Paczkowski🌹 @paczkowskilab.bsky.social · 09/12/2025
What started out as a structure-function project for an undergraduate researcher morphed into something bigger w/ @popea.bsky.social leading the way. Check out how RhlR fine tunes its response to its autoinducer to avoid producing too much pyocyanin. www.biorxiv.org/content/10.6...
biorxiv.org
RhlR quorum-sensing receptor ligand sensitivity regulates the differential expression of phenazine genes in Pseudomonas aeruginosa
Bacteria control individualistic and group behaviors using a form of cell-cell communication called quorum sensing. Quorum sensing relies on the production of chemical signals called autoinducers and ...
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Jon Paczkowski🌹 @paczkowskilab.bsky.social · 08/09/2025
It is rare as an editor to get to take on an article so uniquely in your wheelhouse. Sharing some wonderful work by Guarnaccia et al. from the Perez, Ng, and Neiditch labs. #structuralbiology of #pathogens @plos.org dx.plos.org/10.1371/jour...
dx.plos.org
Structure-function studies of Vibrio cholerae quorum-sensing receptor CqsR signal recognition
Author summary Quorum sensing, a form of bacterial cell-cell communication, regulates diverse developmental behaviors. This study investigates CqsR, a transmembrane receptor in Vibrio cholerae, the ga...
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 28/11/2025
Phage-encoded sRNA counteracts xenogenic silencing in pathogenic E. coli www.biorxiv.org/content/10.1101/202…
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Michael Baym @baym.lol · 20/11/2025
Hot off the press! Our latest paper led by @fernpizza.bsky.social, understanding how plasmids evolve inside cells. These small, self-replicating DNA circles live inside bacteria and carry antibiotic resistance genes, but also compete with one another to replicate. 1/ www.science.org/doi/10.1126/...
science.org
Intracellular competition shapes plasmid population dynamics
From populations of multicellular organisms to selfish genetic elements, conflicts between levels of biological organization are central to evolution. Plasmids are extrachromosomal, self-replicating g...
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Michael Baym @baym.lol · 20/11/2025
Brand new preprint from my lab, showing that TnpB, the ancestor of Cas12, acts as a gene drive in plasmids! And it turns out in conjugative plasmids that it acts as a primitive anti-self defense system, providing a potential link between its transposon effect and becoming CRISPR!
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Nilesh Banavali @nilesh-banavali.bsky.social · 19/11/2025
Apply through APHL to be a summer intern at the Wadsworth Center. Both basic science research and public health opportunities available.
Application information for APHL internship
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Jon Paczkowski🌹 @paczkowskilab.bsky.social · 18/11/2025
The University at Albany Biomedical Sciences Department is hiring at the Assistant Professor level. We are looking for researchers at the intersection of infectious disease and artificial intelligence: albany.interviewexchange.com/jobofferdeta... #infectiousdisease #artificialintelligence
albany.interviewexchange.com
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 11/11/2025
Canonical transcription termination mechanisms explain a minority of operons in cyanobacteria www.biorxiv.org/content/10.1101/202…
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Brandon Sit @sitbrandon.bsky.social · 03/11/2025
First 🟦 post - my main postdoc work is out in the world! We designed a Cas12a-based genetic screen to identify host factors that contribute to infection by the tickborne pathogen Rickettsia parkeri, and stumbled across a really exciting direct interaction between host and bacterium🦠. Check it out!
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Max Wilkinson @maxewilkinson.bsky.social · 31/10/2025
The Wilkinson Lab is open for science! @mskcancercenter.bsky.social 🧬We'll be finding funky new RNA biology, mainly by looking at reverse transcriptases (i.e. the Best Enzymes In The World)🧬 annnd: I'm hiring - come join! Especially postdocs and PhD students - please get in touch (NYC is great)
wilkinsonlab.bio
Wilkinson Lab
We discover and study reverse transcriptases
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