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Romi Hadary

@romihadary.bsky.social
86 followers 62 following 21 posts

PhD student @Soreklab.bsky.social @WeizmannScience Studying phage-bacteria arms race🦠🛡️

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Maya Voichek @mayavoichek.bsky.social · 24/09/2026
Super excited to share my postdoctoral work at @imbavienna.bsky.social @viennabiocenter.bsky.social - We discovered that some retrotransposons, or "jumping genes" 🧬, are able to spread from cell to cell via a new viral infectivity route. A short thread: 🧵👇 (1/7)
AI-generated illustration of the soma-to-germline transmission of retrotransposons described in our work
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Malcolm White @mfwhite2.bsky.social · 16/09/2026
Our paper on type II Panoptes is now published at PLOS Biology with new data on phage escapers - quite a step up in microbiology for our lab, led by Sabine Gruschow. Thanks to @erc.europa.eu for funding dx.plos.org/10.1371/jour...
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François Rousset @francoisrousset.bsky.social · 08/09/2026
🚨 We are excited to share the first preprint of our lab ! We discovered an NADase enzymatic domain in bacterial immunity and in the human protein TEP1. www.biorxiv.org/content/10.6...
biorxiv.org
A widespread NADase domain links bacterial immunity with human TEP1
Recent discoveries on bacterial immunity have revealed that several protein domains involved in anti-phage defense are conserved in eukaryotes, such as SIRim, TIR, PNP and gasdermin. Bacterial immune ...
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Sorek Lab @soreklab.bsky.social · 08/09/2026
An exciting study showing how understanding bacterial immunity reveals new functions in human biology. Congratulations François and colleagues!
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Sorek Lab @soreklab.bsky.social · 31/08/2026
A giant of science. Rest in peace 🙏
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Kranzusch Lab @kranzuschlab.bsky.social · 12/08/2026
The shared principles of human and bacterial antiviral immunity An honor to highlight remarkable discoveries from many labs over the past 12 years that unite previously disparate fields of how animal cells and prokaryotes defend against viruses. www.nature.com/articles/s41... rdcu.be/fzwyB
nature.com
Shared principles of human and bacterial antiviral immunity - Nature
The Review describes shared ancient, conserved mechanisms between human antiviral immunity and bacterial anti-phage systems, outlining universal principles of pathogen sensing, signalling and effector...
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Ben Morehouse @benmorehouse.bsky.social · 12/08/2026
Today we are excited to introduce you to PanDA 🐼🐼🐼, a newly uncovered antiphage system!! Attendees at @SISB2026 would have heard a little about this from graduate student Ali Nabhani back in May, but we are now out here in preprint form and delighted to share more of the details. (Thread below)
biorxiv.org
Minimal diadenylate cyclases have been co-opted to detect phage immune evasion
Many bacterial immune defenses transmit recognition of phage infection via the generation of diverse cyclic nucleotide second messengers. Phage have evolved to subvert this kind of immunity by sequest...
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Ady Ragucci @aragucci.bsky.social · 12/08/2026
Excited to share our story on diadenylate cyclases in bacterial immunity! Building on the discovery of Panoptes, we present Panoptoo: a DAC operon that uses cUA to guard against phage infection. Grateful to @daniellehaley.bsky.social and @kranzuschlab.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
Bacterial diadenylate cyclase domains synthesize diverse nucleotide signals in anti-phage defense
Bacterial diadenylate cyclase (DAC) enzymes synthesize the nucleotide signal 3′3′ cyclic di-AMP (3′3′-c-di-AMP) to control osmoregulation, cell-wall homeostasis, and DNA-damage responses. Here we disc...
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Di Jiang @dijiang319.bsky.social · 08/08/2026
@science.org Generative design of bacteriophages with genome language models | Science www.science.org/doi/10.1126/...
science.org
Generative design of bacteriophages with genome language models
Many important biological functions arise not from single genes but from complex interactions encoded by entire genomes. We report the first generative design of complete bacteriophage genomes using g...
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Jason Nomburg @jnoms.bsky.social · 22/07/2026
Happy to share the first preprint out of the Nomburg lab! Many aspects of cellular immunity are shared across the tree of life. Here, we show that some of these conserved aspects of cellular immunity are mirrored by conserved effectors of immune antagonism. Thread below! 1/15
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Aude Bernheim @audeber.bsky.social · 21/07/2026
Out @cp-cellhostmicrobe.bsky.social, natural products meet bacterial immunity! We used genomics to identify lanthivirins: a family of >2,000 lanthipeptide BGCs that protect Actinobacteria against phages. Led by @hshomar.bsky.social & @mariegllm.bsky.social www.sciencedirect.com/science/arti...
sciencedirect.com
A family of lanthipeptides with anti-phage function
Bacteria produce natural products to adapt to their environments, with phage interactions as major ecological and evolutionary drivers. While some nat…
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Rafael Pinilla-Redondo (Rafa) @rafomics.bsky.social · 16/07/2026
1/10 🚨Preprint! One RING to rule them all (phages)👑💍⚔️ Bacteria build giant DNA-scaffolded RNase rings (larger than the ribosome!) to shut down viral infection🧬🧵👇 biorxiv.org/content/10.6...
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Sorek Lab @soreklab.bsky.social · 13/07/2026
Ilya Osterman is opening a new lab at EMBL Hamburg and is now hiring. Highly recommended - a fantastic opportunity to do top-notch science in phage biology and bacterial immunity
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Osterman Ilya @ostermanilya.bsky.social · 13/07/2026
🚨 We're hiring! My new lab at EMBL Hamburg is looking for a Research Technician. I'm looking for someone excited by phages, metabolism, enzymes, structural biology and bacterial immunity—if you know the right person, please share this post!🧵⬇️ Apply here: embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
embl.wd103.myworkdayjobs.com
Research Technician (Osterman Group – Metabolism-driven immunity)
EMBL Hamburg / CSSB The European Molecular Biology Laboratory (EMBL) is Europe’s flagship life sciences organization, with more than 110 independent research groups across Heidelberg, Hamburg, Grenobl...
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Sorek Lab @soreklab.bsky.social · 09/07/2026
Our paper out in Science today: The Metis defense system senses molecular byproducts released when a phage degrades the bacterial genome, and then prevents replication of the phage in the infected cell Congratulations @ostermanilya.bsky.social and co-authors!
science.org
Bacteria sense virus-induced genome degradation via methylated mononucleotides
Phages often degrade the genome of their bacterial host to individual nucleotides. Here we describe Metis, a bacterial defense system that directly senses phage-mediated host genome degradation. Metis...
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Osterman Ilya @ostermanilya.bsky.social · 09/07/2026
Excited to share that our Metis story is now published in Science! 🎉 Bacteria can sense phage-induced degradation of their genome and activate immunity. Many thanks to everyone who contributed to this work. 📄 www.science.org/doi/10.1126/... More details in my earlier thread 🧵⬇️
science.org
Bacteria sense virus-induced genome degradation via methylated mononucleotides
Phages often degrade the genome of their bacterial host to individual nucleotides. Here we describe Metis, a bacterial defense system that directly senses phage-mediated host genome degradation. Metis...
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François Rousset @francoisrousset.bsky.social · 07/07/2026
🚨Defense systems against conjugative plasmids can kill recipient cells, like abortive infection against phages. Massive effort from very talented Ludovic Poiré (@ludopoire.bsky.social) in the Charpentier lab at @ciri-lyon.bsky.social ! Very happy our team could contribute w @julie-bltk.bsky.social
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Kranzusch Lab @kranzuschlab.bsky.social · 02/07/2026
New preprint from @courtneyrsantos.bsky.social and @kvnforsberg.bsky.social discovering human ISGs are sufficient to block phage replication in bacteria! Amazing to see such strong phenotypes especially against RNA phages: www.biorxiv.org/content/10.6...
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Kranzusch Lab @kranzuschlab.bsky.social · 16/06/2026
@ohadroth.bsky.social and @soreklab.bsky.social discover bacterial enzymes that cleave the immune signal 2'cADPR explaining the mystery of XopQ virulence proteins in plant pathogens. Beautiful results mirroring phage inhibition of 2'- and 3'cADPR in bacteria! 🌱✂️ www.biorxiv.org/content/10.6...
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Ohad Roth @ohadroth.bsky.social · 16/06/2026
How do pathogens disarm plant immunity? We discovered a widespread strategy used by plant bacterial pathogens: they directly cleave a conserved immune signaling molecule produced by plant immune receptors. www.biorxiv.org/content/10.6...
biorxiv.org
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Cell Host & Microbe @cp-cellhostmicrobe.bsky.social · 12/06/2026
NAD to the bone: How bacteria put phages under aRES-t … and how phages fight back Preview of work IDing aRES, bacterial proteins that deplete cellular NAD+, generating products that cannot be utilized by phage NAD+ regeneration pathways www.cell.com/cell-host-mi...
cell.com
NAD to the bone: How bacteria put phages under aRES-t … and how phages fight back
In this issue of Cell Host & Microbe, Osterman et al. discover aRES, a new family of bacterial immune proteins that deplete cellular NAD+, generating cleavage products that cannot be utilized by canon...
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Kranzusch Lab @kranzuschlab.bsky.social · 12/06/2026
How do human cells defend against viruses? @sgfern.bsky.social discovers that human immune proteins named ISGs target ancient features of replication shared between animal and bacterial viruses – opening analysis of human immunity to the power of bacterial genetics www.biorxiv.org/content/10.6...
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 06/06/2026
Balancing of immune activation and suppression during phage infection www.biorxiv.org/content/10.64898/20…
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Nature Microbiology @natmicrobiol.nature.com · 03/06/2026
Out Now! Functional diversity of phage sponge proteins that sequester host immune signals #MicroSky
go.nature.com
Functional diversity of phage sponge proteins that sequester host immune signals
Nature Microbiology, Published online: 02 June 2026; doi:10.1038/s41564-026-02352-0A functional screen reveals phage sponge proteins that bind Pycsar, Thoeris and CBASS signalling molecules to inhibit bacterial immunity.
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Kranzusch Lab @kranzuschlab.bsky.social · 02/06/2026
@romihadary.bsky.social and @soreklab.bsky.social 's discovery that sponge proteins constitute enormous families of viral immune evasion factors is now out in @natmicrobiol.nature.com @reneechang.bsky.social and our lab were happy to help with this story! www.nature.com/articles/s41...
nature.com
Functional diversity of phage sponge proteins that sequester host immune signals - Nature Microbiology
A functional screen reveals phage sponge proteins that bind Pycsar, Thoeris and CBASS signalling molecules to inhibit bacterial immunity.
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Romi Hadary @romihadary.bsky.social · 03/06/2026
Excited to see our work out in @natmicrobiol.nature.com! We uncovered broad functional diversity within phage sponge families🧽. Huge thanks to all coauthors and brilliant collaborators @kranzuschlab.bsky.social @reneechang.bsky.social ! www.nature.com/articles/s41...
nature.com
Functional diversity of phage sponge proteins that sequester host immune signals - Nature Microbiology
A functional screen reveals phage sponge proteins that bind Pycsar, Thoeris and CBASS signalling molecules to inhibit bacterial immunity.
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Osterman Ilya @ostermanilya.bsky.social · 30/05/2026
Our aRES story is finally out 😀 Beyond what was reported in the preprint, we found that aRES is activated by direct binding of the phage DNA polymerase. Another NAD-degrading defense system — and multiple phage strategies to overcome it. www.sciencedirect.com/science/arti...
sciencedirect.com
Bacterial defense via RES-mediated NAD+ depletion is countered by phage phosphatases
Many bacterial defense systems restrict phage infection by breaking down the molecule nicotinamide (Nam) adenine dinucleotide (NAD+) into adenosine di…
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Romi Hadary @romihadary.bsky.social · 29/05/2026
Very exciting story about phage RyRs! An anti-defense family with members function either as an enzyme or as a sponge inhibiting Thoeris🛡️🧽✂️ Striking similarity to the animal RyR! Really glad to have taken part in this discovery, congrats @riveralopz.bsky.social and coauthors on this beautiful work!
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Osterman Ilya @ostermanilya.bsky.social · 28/05/2026
🚨After 4 fantastic years in the Sorek lab @soreklab.bsky.social, I’ll be starting my own group at EMBL @embl.org bl.org Hamburg. www.embl.org/groups/oster... Metabolism-driven immunity: phages, metabolites, and discovery of new enzymes, molecules, and pathways 🦠🧬
embl.org
Osterman Group – Metabolism-driven immunity
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Sar Crespi @boron110.bsky.social · 22/05/2026
This week on the @science.org podcast, @richardastone.bsky.social talks about our bacterial brothers in arms. Listen here: www.science.org/content/podc...
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Aude Bernheim @audeber.bsky.social · 22/05/2026
Great piece and cover @science.org about how our field is uncovering the evolutionary and mechanistic connections between bacterial and eukaryotic immunity ! www.science.org/content/article/ancient-wars-between-microbes-gave-us-key-immune-defenses
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Cell Host & Microbe @cp-cellhostmicrobe.bsky.social · 19/05/2026
Predicting phage anti-defenses that shoot the messenger Mahler & @yuping-li.bsky.social highlight @science.org work developing a structure-guided approach to identify phage proteins counteracting bacterial nucleotide signaling defenses using metagenomic data. www.cell.com/cell-host-mi...
cell.com
Predicting phage anti-defenses that shoot the messenger
Locked in a constant arms race, bacteria and their phage predators have evolved various defenses and counter-defenses. Compared to the numerous identified defenses, phage-encoded counter-defenses are ...
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Shicheng Guo @shihcheng.bsky.social · 19/05/2026
Phage encodes a sponge protein blocking bacterial TIR-Caspase immune signaling, inhibiting type IV Thoeris. Discovered through phage mating assays. PMID:41968157, Nat Commun 2026, @NatureComms doi.org/10.1038/s41467-026-71527-4 #Medsky #Pharmsky #RNA #ASHG #ESHG 🧪
doi.org
A phage-encoded sponge protein suppresses bacterial TIR-Caspase immune signaling | Nature Communications
Triggering immune response through generation of signal molecules is a common immune strategy across all domains of life. In the bacterial type IV Thoeris anti-phage system, a Toll/interleukin-1 receptor (TIR)-domain protein produces adenosine 5’-diphosphate-cyclo[N7:1”]-ribose (N7-cADPR) as the immune signal to activate a Caspase-like effector. Here, we identified an inhibitor of type IV Thoeris through a phage mating assay that allows a sensitive phage to acquire anti-defense genes from related resistant phages. The inhibitor (hereafter TadIV-1) functions as a sponge that sequesters the N7-cADPR signal to inhibit Caspase activation. Structural analyses of TadIV-1 indicate a distinctive signal binding mechanism, wherein the binding pocket comprises its N-terminal flexible loop. In addition, phages lacking TadIV-1 can escape type IV Thoeris sensing through mutation in the capsid vertex protein. Collectively, this work expands the phage anti-defense arsenal with a unique immune signal s
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Emmanuele Severi @emmseveri.bsky.social · 28/04/2026
#microsky #phagesky #phage defence academic.oup.com/nar/article/...
academic.oup.com
The SAVED domain of the type III CRISPR protease CalpL is a ring nuclease
Abstract. Prokaryotic CRISPR-Cas immune systems detect and cleave foreign nucleic acids. In type III CRISPR-Cas systems, the Cas10 subunit of the activated
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Kenneth Loi @kenjmloi.bsky.social · 27/04/2026
Excited to share our discovery of a new programmable RNA-guided DNA-targeting system hiding inside bacteriophages that predates CRISPR. We call it VIPR (Viral Interference Programmable Repeat), and it uses an entirely new logic to find its targets. Thread + link below.
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Sorek Lab @soreklab.bsky.social · 23/04/2026
We found that TIR domains in animal immune proteins, including the human TLR4, are enzymes that cleave NAD+ to produce the signaling molecule cADPR Read our new preprint by talented Bohdana Hurieva: “Conserved catalytic activity of immune TIR domains in animals” www.biorxiv.org/content/10.6...
biorxiv.org
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Romi Hadary @romihadary.bsky.social · 23/04/2026
Huge effort to systematically characterize TIR domains🔬 revealing conserved catalytic activities, including surprising human TIR! Beautiful work by @bhurieva.bsky.social and coauthors, congrats!!✨👏🏻
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Aude Bernheim @audeber.bsky.social · 02/04/2026
How diverse is bacterial immunity ? We report in @science.org how language models allowed us to predict 2.4M antiphage proteins spanning >23K novel potential systems. 👏 @emordret.bsky.social, @alexhv.bsky.social & al doi.org/10.1126/scie... Explore them here defensefinder.mdmlab.fr/wiki/refseq_...
science.org
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Stern-Ginossar Lab @sginossarlab.bsky.social · 26/03/2026
We are excited to share our new paper in Molecular Cell uncovering how the viral lncRNA RNA2.7 reshapes host cell biology! sciencedirect.com/science/authShare/S1097276526001565/20260324T143400Z/1?md5=16c84051c2f253c4665427f837a529d3&dgcid=author A thread 🧵
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Jens Hör @jenshoer.bsky.social · 21/03/2026
Excited to share the first preprint from the lab! We show that ApeA defends against RNA phage infection by cleaving the phage genome: www.biorxiv.org/content/10.6...
biorxiv.org
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Malcolm White @mfwhite2.bsky.social · 16/03/2026
New preprint: Cyclic tri-adenylate signalling by a Panoptes anti-phage guard system with a CARF-TM effector. Great work led by Sabine Grüschow www.biorxiv.org/content/10.6...
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Artem Nemudryi @artemnemudryi.bsky.social · 09/03/2026
Our work on bacterial Schlafens in phage defense is out today @natmicrobiol.nature.com! Check out the final version here: rdcu.be/e7Bmz We are looking for postdocs and students to expand our team! Official postings are coming soon. Please reach out if you're interested! #phage #phagesky #microsky
rdcu.be
Bacterial Schlafen proteins mediate phage defence
Nature Microbiology - This study highlights that Schlafens are ancient, mechanistically conserved immune effectors that mediate antiviral immunity in organisms ranging from humans to bacteria.
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Nitzan Tal @nitzantal.bsky.social · 06/03/2026
Very excited to see this work out today! Discovering viral immune antagonists directly from predicted protein structures. 🤩 www.science.org/doi/10.1126/... Huge thanks to the amazing collaborators! 🤗
science.org
Structural modeling reveals phage proteins that manipulate bacterial immune signaling
Immune systems in animals, plants, and bacteria often rely on intracellular nucleotide signaling, which viruses can block by sequestering or degrading these signals. We identified structural and bioph...
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Sam Hobbs @hobbslabutah.bsky.social · 06/03/2026
CBASS is a cyclic nucleotide-based antiviral system in bacteria that is related to cGAS-STING signaling in animals. One of the big questions is how CBASS is activated during phage infection? We made some progress on this during my final year in the Kranzusch lab. www.biorxiv.org/content/10.6...
biorxiv.org
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Kranzusch Lab @kranzuschlab.bsky.social · 06/03/2026
After >10 years of our lab studying bacterial cGAS-like enzymes, @hobbslabutah.bsky.social finally reconstitutes viral sensing in vitro and discovers how these ancient receptors sense phage protease enzymes to detect virion assembly and activate antiviral immunity www.biorxiv.org/content/10.6...
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Kranzusch Lab @kranzuschlab.bsky.social · 05/03/2026
@nitzantal.bsky.social @romihadary.bsky.social @soreklab.bsky.social use structure prediction and in silico binding site analysis to discover viral immune evasion proteins! Exciting for our lab @reneechang.bsky.social @riveralopz.bsky.social to help with this project. www.science.org/doi/10.1126/...
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Romi Hadary @romihadary.bsky.social · 06/03/2026
Excited to see our paper out in @science.org 🧽✨ Congrats @nitzantal.bsky.social !
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Kranzusch Lab @kranzuschlab.bsky.social · 18/02/2026
Congratulations to Sonomi Yamaguchi for her paper at @nature.com. Sonomi discovered Clover defense and explained how nucleotide signals control each step of viral sensing, immune regulation, and viral restriction – named for her beautiful "four-leaf" structures 🍀 www.nature.com/articles/s41...
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Bohdana Hurieva🇺🇦 @bhurieva.bsky.social · 17/02/2026
Excited to share our new paper led by a wonderful Jing Liu on designing de novo IDRs🧪🖥️
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Cell Host & Microbe @cp-cellhostmicrobe.bsky.social · 30/01/2026
Chemical inhibition of a bacterial immune system Small molecules inhibit type II Thoeris anti-phage systems from diverse bacteria. One compound, IP6C, improves phage-therapy against P. aeruginosa & is effective against Thoeris in polymicrobial communities www.cell.com/cell-host-mi...
cell.com
Chemical inhibition of a bacterial immune system
Bacteriophages are promising alternatives to antibiotics for treating bacterial infections. However, bacteria possess immune systems that neutralize bacteriophages. Zang et al. discover small molecule...
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