Reposted by Nilesh BanavaliJon Paczkowski🌹 @paczkowskilab.bsky.social · 8h🦠Interested in a PhD or MS in all things microbiology? Apply to join us at the Wadsworth Center and the University at Albany Department of Biomedical Sciences! 113
Reposted by Nilesh Banavalipilarcossio.bsky.social @pilarcossio.bsky.social · 14/10/20261/5 Cryo-EM gives high-resolution RNA structures, but only when high Mg²⁺ freezes out their motion. At physiological conditions, RNAs are dynamic and 3D reconstruction fails. Can we still learn their folding equilibria? New preprint: yes, straight from the raw particle images👇 14818
Reposted by Nilesh BanavaliSiân Owen @sianowen.bsky.social · 14/10/2026Applying to PhD programs? Consider UAlbany's Biomedical Sciences program! We're keen to recruit students interested in molecular microbiology, virology, structural & comp biology. We're a close-knit department invested in our trainees, and Albany is fun & affordable. Please share!! shorturl.at/buMsZ 288
Reposted by Nilesh BanavaliMeade Krosby @meadekrosby.bsky.social · 08/07/2026Timeline cleanse: American pikas calling to each other in the Canadian Rockies. Sound on to hear the loud “MEEP!” made by these potato sized alpine mammals. They’re way off under those cliffs but the calls travel. *this is likely a niche post, but it’s one of my favorite sounds in the world. 591724296
Nilesh Banavali @nilesh-banavali.bsky.social · 11/10/2026Fall Catskills view from Ashokan reservoir 000
Reposted by Nilesh BanavalicryoEM papers @cryoempapers.bsky.social · 11/10/2026Ab initio CryoEM maps minimizing preferred orientation problems in heterogeneous mixtures: ReconSIREN www.biorxiv.org/content/10.64898/2026.10.03.756391v1 #cryoEM 054
Reposted by Nilesh BanavaliJames Fraser @fraserlab.com · 10/10/2026I hear so much about the growing power of predictive biology, especially in drug discovery and "co-folding". I want to see people put their GPU budget where their mouth is! 13612
Reposted by Nilesh BanavaliGreen Lab JHMI @greenlab.bsky.social · 09/10/2026U should check DIS out! In our new paper (and sequel to our RIOK3 story), we find that rRNA oligo(U) tailing and DIS3L2-mediated decay drive 40S ribosome degradation 💫 www.cell.com/molecular-ce...cell.comOligo(uridine) tailing and exonucleolytic decay drive 40S ribosome degradation in response to stress40S ribosomes are degraded in diverse stress conditions. Diehl et al. find that in response to stress, TUT7 is recruited to ubiquitylated 40S ribosomes and adds 3′ oligo(U) tails to the 18S rRNA. Iter... 1159
Reposted by Nilesh BanavaliGreen Lab JHMI @greenlab.bsky.social · 09/10/2026And here’s a beautiful complementary story from the lab of @colinwu.bsky.social!! www.cell.com/molecular-ce...cell.com40S ribosome remodeling triggers 18S rRNA U-tailing and DIS3L2-dependent decayTranslational perturbations trigger ubiquitination and turnover of 40S ribosomes, yet how these events are coupled remains unclear. Shah et al. reveal that RIOK3 remodels ubiquitinated 40S subunits, e... 0117
Reposted by Nilesh BanavaliPrzemek Dutka @przemekdut.bsky.social · 08/10/2026Our latest development is now on bioRxiv: cryoSHIELDs — amphipathic peptide additives that make cryo-EM grid prep far more reliable. Tested across 24 protein systems, they enabled the first ABCC6 structure and GPCR–G protein structures at just 0.1–0.5 mg/mL! www.biorxiv.org/content/10.6... 14726
Nilesh Banavali @nilesh-banavali.bsky.social · 08/10/2026Structure of human GCN1-ABCF3 bound to collided di-ribosomes - a sensor for amino acid starvation www.biorxiv.org/content/10.6...biorxiv.orgMolecular Architecture of the Human GCN1–ABCF3 Ribosome Collision SensorThe Integrated Stress Response is a critical eukaryotic signaling pathway that maintains cellular proteostasis. During amino acid scarcity, the yeast kinase Gcn2 (GCN2 in humans) and its activators Gc... 021
Nilesh Banavali @nilesh-banavali.bsky.social · 08/10/202660S ribosome degrades when it is not released from the ER translocon www.biorxiv.org/content/10.6...biorxiv.orgFailure to release from the ER translocon induces 60S ribosome degradationRibosome malfunction has toxic consequences, but how mammalian cells select ribosomal subunits for degradation remains poorly understood. Here, we develop a pulse-chase CRISPR screening strategy to id... 011
Reposted by Nilesh BanavaliNature @nature.com · 08/10/2026Nature research paper: RNA catalysis emerges from dynamic structural ensembles go.nature.com/4hzV4jrgo.nature.comRNA catalysis emerges from dynamic structural ensembles - NatureRNase P RNA forms shifting active and inactive conformers whose catalytic activity depends on Mg2+-driven tertiary-interaction dynamics, which are modulated by binding of accessory proteins. 093
Reposted by Nilesh Banavalierzbergerlab.bsky.social @erzbergerlab.bsky.social · 08/10/2026Ribosome remodeling drives translation adaptation during viral infection and cellular stress: Molecular Cell www.cell.com/molecular-ce...cell.comRibosome remodeling drives translation adaptation during viral infection and cellular stressTsai et al. discover that ribosome composition is reprogrammed in response to intrinsic and external cellular perturbations, which supports ribosome remodeling as a conserved mechanism that enables ad... 01110
Reposted by Nilesh BanavaliHarmit Singh Malik @harmitmalik.bsky.social · 07/10/2026One stop codon to evade two divergent immune systems www.fredhutch.org/content/www/... Great writeup by Ashley Person @fredhutch.org Original paper by @tamanash.bsky.social here: www.science.org/doi/10.1126/...fredhutch.orgOne stop codon to evade two divergent immune systemsA recent study reveals how a single stop codon helps alphaviruses evade immune defenses in both mosquitoes and humans 15015
Reposted by Nilesh BanavalicryoEM papers @cryoempapers.bsky.social · 06/10/2026Long-form hibernation-promoting factor coordinates 100S assembly and translational repression www.biorxiv.org/content/10.64898/2026.10.02.756224v1 #cryoEM 001
Reposted by Nilesh BanavaliMerriam-Webster @merriam-webster.com · 05/10/2026The SPEAKER implies. The LISTENER infers. The DUDE abides. 6548321128
Reposted by Nilesh BanavaliMassimo (mirror) @rainmaker1973-m.bsky.social · 05/10/2026How to digitalize a camera film Repost of @EIRancheroLoco: Original post 0247
Reposted by Nilesh BanavaliGwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 04/10/2026I have modernized and enhanced the NSF COA generator tool. Results now update dynamically • Published under more than one name? Covered! • Other people share your name? No problem! • You prefer searching by ORCID? Go ahead! Give it a try. Feedback, bug reports, feature requests are MOST welcome! 🧪 05327
Reposted by Nilesh BanavaliZeynep Baharoglu @zeynepbaharoglu.bsky.social · 03/10/2026A type VI secretion ADP-ribosyltransferase Rhs toxin selectively modifies charged tRNAThr(GGU) anticodon loops to block ACC codon decoding academic.oup.com/nar/article/...academic.oup.comA type VI secretion ADP-ribosyltransferase Rhs toxin selectively modifies charged tRNAThr(GGU) anticodon loops to block ACC codon decodingAbstract. The type VI secretion system (T6SS) is a sophisticated machine that uses a contractile mechanism to deliver antibacterial toxins into neighboring 051
Reposted by Nilesh BanavaliDiorge Souza @diorgeps.bsky.social · 02/10/2026Finally out! Our work uncovers evolutionary links between bacterial and archaeal ribosome hibernation and eukaryotic energy sensing, through the archaeal hibernation factor AHA link.springer.com/article/10.1...link.springer.comA conserved archaeal protein with evolutionary links to bacterial ribosome hibernation and eukaryotic energy sensing - The EMBO JournalRibosome hibernation helps cells survive stress by reversibly silencing translation and preserving ribosomal complexes. Although well characterized in bacteria and eukaryotes, archaeal hibernation rem... 14316
Reposted by Nilesh BanavalicryoEM papers @cryoempapers.bsky.social · 02/10/2026CryoConvNeXt enables robust identification of low-abundance molecular species in experimental cryo-EM data pubmed.ncbi.nlm.nih.gov/42818773/ #cryoEM 053
Reposted by Nilesh BanavaliScience Magazine @science.org · 30/09/2026In Science, researchers present the Virtual Biotech, an AI system to inform drug-development decisions. By combining diverse biomedical and clinical evidence in a unified platform, the system may help identify therapeutic opportunities that would otherwise be missed. scim.ag/4h0KTnJ scim.agThe Virtual Biotech: A multi-agent AI framework for therapeutic discovery and developmentDrug development requires evidence integration across biological scales and modalities, but relevant tools are fragmented. We introduce the Virtual Biotech, an organization of artificial intelligence ... 1134
Reposted by Nilesh BanavaliWes Craven Glizzies @ywfyf.com · 29/09/2026I saw a leaf with legs on my way home today. 371729143
Reposted by Nilesh BanavaliBrian Stevenson Ph.D. spirochete lab @bstevensonlab.bsky.social · 28/09/2026The Insect Epiphany: How Our Six-Legged Allies Shape Human Culture Free zoom presentation October 8, 7:00PM Central time Information and registration: www.aldoleopold.org/news-and-eve...aldoleopold.orgUpcoming Programs and Events | Aldo Leopold FoundationStay updated on upcoming programs and events at the Aldo Leopold Foundation. Browse our calendar, learn more, and register for events to secure your spot. 032
Reposted by Nilesh BanavalicryoEM papers @cryoempapers.bsky.social · 26/09/2026The CAHRA Challenge: A Community-Wide Assessment of Cryo-EM Heterogeneous Reconstruction Algorithms pubmed.ncbi.nlm.nih.gov/42779743/ #cryoEM 053
Reposted by Nilesh Banavalijoe dobbs @joedobbs.bsky.social · 25/09/2026Our work investigating the cooperation between gene expression machines is now online @cellpress.bsky.social. Check it out if you're interested in high-throughput #cryoET, transcription and translation, or using structural biology to quantify gene expression in cells! 🔬 www.cell.com/cell/fulltex...cell.comSingle-cell visual proteomics of a minimal bacterium reveals structural coordination of gene expression machineriesCryo-electron tomography (cryo-ET) resolves and quantifies an almost complete view of bacterial translation, revealing how gene expression machineries coordinate across the processes of transcription,... 28426
Reposted by Nilesh BanavaliRobert Arkowitz @robertarkowitz.bsky.social · 26/09/2026In-cell structures visualize human pre-ribosome assembly in the nucleolus | Science www.science.org/doi/10.1126/...science.orgIn-cell structures visualize human pre-ribosome assembly in the nucleolusIn eukaryotes, ribosome biogenesis initiates within the nucleolus, a hallmark multilayered compartment of the nucleus. Structures of pre-ribosomes have been characterized ex situ, but their assembly p... 0112
Reposted by Nilesh BanavaliRasmus Jensen @rasmusjensen.bsky.social · 25/09/2026🎉 Out today in Cell: the paper I've been looking forward to sharing for a long time 🎉 We used cryo-ET to find a molecular machine nobody knew existed on the surface of a minimal bacterium, and worked out what it does. 🧵(1/7) #TeamTomo #cryoET 1023696
Reposted by Nilesh BanavaliZeynep Baharoglu @zeynepbaharoglu.bsky.social · 25/09/2026Fluorescent proteins misreport ribosome abundance under translation inhibition www.biorxiv.org/content/10.6...biorxiv.orgFluorescent proteins misreport ribosome abundance under translation inhibitionFluorescent proteins are widely used as quantitative reporters of protein abundance in living cells. Here we show that this relationship can break down under translation inhibition: the cellular ribos... 031
Reposted by Nilesh BanavaliZeynep Baharoglu @zeynepbaharoglu.bsky.social · 25/09/2026An RNA Language Model trained on sequence alone reveals the structural logic of Internal Ribosome Entry Sites www.biorxiv.org/content/10.6...biorxiv.orgAn RNA Language Model trained on sequence alone reveals the structural logic of Internal Ribosome Entry SitesMillions of RNA sequences are readily available, but the structures that determine their function are not. Picornaviruses initiate translation through Internal Ribosome Entry Sites (IRESes), RNA eleme... 053
Reposted by Nilesh BanavaliZeynep Baharoglu @zeynepbaharoglu.bsky.social · 25/09/2026Sparsomycin inhibits translation through a conserved mechanism across all domains of life academic.oup.com/nar/article/...academic.oup.comSparsomycin inhibits translation through a conserved mechanism across all domains of lifeAbstract. Sparsomycin (SPA) is a broad-spectrum inhibitor of protein synthesis with activity across all three domains of life. Although SPA has long been k 054
Reposted by Nilesh BanavaliIU Biology @iubiology.bsky.social · 20/08/2026Congratulations to IU biology postdoc Kayla Simanek in the van Kessel lab on receiving the prestigious Life Sciences Research Foundation Fellowship! @ksimanek.bsky.social 🔗 go.iu.edu/hy58UV 042
Reposted by Nilesh BanavaliZeynep Baharoglu @zeynepbaharoglu.bsky.social · 20/09/2026Bacterial growth rate in populations and single cells 🦠💫 www.nature.com/articles/s41... beautiful review by Petra Levin and Jue Wangnature.comBacterial growth rate in populations and single cells - Nature MicrobiologyIn this Perspective, Levin and Wang give a brief history of bacterial growth rate and discuss how it is connected to nutrient availability and macromolecule synthesis, with a focus on (p)ppGpp as a ce... 083
Reposted by Nilesh BanavaliRobert Arkowitz @robertarkowitz.bsky.social · 20/09/2026millenniumproblems.biomillenniumproblems.bioThe Millennium Problems for BiologyA working catalogue of twelve open problems in biology — each a concrete, testable target for the field. 352
Reposted by Nilesh Banavalic0nc0rdance @c0nc0rdance.bsky.social · 06/02/2025A Pirate Ribosome's first love is the C ... (GU). (🧑🎨: Science Fried Art) 514630
Reposted by Nilesh Banavalisoneya-majumdar.bsky.social @soneya-majumdar.bsky.social · 17/09/2026www.nature.com/articles/s41...nature.comReimagining research papers as interactive and reliable AI agents - NaturePaper2Agent converts research papers into interactive artificial intelligence agents by turning manuscripts, code and data into model context protocol-based tool-invoking systems that reproduce origin... 001
Reposted by Nilesh BanavaliHauke Hillen @haukehillen.bsky.social · 11/09/2026Happy to share our new preprint on the structure of the human mitochondrial RNA degradosome, a central player in organellar RNA metabolism! Work led by graduate student @paulafprado.bsky.social in our group. www.biorxiv.org/content/10.6... 🧵 1/9 19134
Reposted by Nilesh BanavaliAlan Brown @alanbrownhms.bsky.social · 10/09/2026Millions of beating cilia keep airways clean. At the base of each is the transition zone (TZ), a gate that controls which proteins enter and leave. In our paper out today in Science, we used cryo-FIB-ET to image the TZ inside human airway cells www.science.org/doi/10.1126/...science.orgIn situ structure of the human ciliary transition zone links linker defects to primary ciliary dyskinesiaThe ciliary transition zone (TZ) regulates ciliary proteome composition, yet its molecular architecture, protein content, and contribution to motile ciliopathies remain poorly defined. We applied in situ cryo-electron tomography and subtomogram averaging ... 211945
Nilesh Banavali @nilesh-banavali.bsky.social · 10/09/2026Cover framed, put outside lab, and posed next to. 000
Reposted by Nilesh BanavaliDani cRabaiotti 🦀 @danirabaiotti.bsky.social · 10/02/2024Welcome to the Science feed! Please read our FAQs for instructions for how to be added as a contributor: bossett.io/science-feed/ Mod introductory posts linked below⬇️ Use the test tube emoji on posts you want to appear in the feed🧪 Please like the feed and make sure you follow our feed rules: 1091316392360
Reposted by Nilesh BanavaliThe Royal Society @royalsociety.org · 27/08/2026Professor Lewis E Kay FRS is awarded the Royal Medal (Biological) 2026 for his remarkable contribution to understand and quantify protein dynamics and their relevance to protein function. #RSMedals royalsociety.org/medals-and-prizes/… 4228
Reposted by Nilesh BanavaliThe Royal Society @royalsociety.org · 28/08/2026The Francis Crick Medal and Lecture 2027 is awarded to Dr Thi Hoang Duong (Kelly) Nguyen for her ground-breaking discoveries into the molecular mechanisms of telomere maintenance. #RSMedals royalsociety.org/medals-and-prizes/… 3529
Reposted by Nilesh BanavaliThe Royal Society @royalsociety.org · 27/08/2026Professor Dame Janet M Thornton DBE FMedSci FRS is awarded the Croonian Medal and Lecture 2027 for her pioneering work in protein structural and functional bioinformatics. #RSMedals royalsociety.org/medals-and-prizes/… 54814
Reposted by Nilesh BanavaliThe Royal Society @royalsociety.org · 27/08/2026Professor Bonnie Bassler is awarded the Copley Medal for her discovery of the universality of chemical communication in bacteria and for her idea that interfering with this communication could form the basis of novel anti-bacterials. #RSMedals royalsociety.org/medals-and-prizes/… 413836
Reposted by Nilesh BanavaliContempraInn 🌹 @contemprainn.bsky.social · 07/09/2026Studies show that watching a beaver eating cabbage lowers stress levels by 15% so enjoy 😊 22357521136
Nilesh Banavali @nilesh-banavali.bsky.social · 06/09/2026A late summer day at the million dollar beach in Lake George. 020