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Gopal Jayaraj

@gopaljayaraj.bsky.social
131 followers 179 following 7 posts

Postdoc @Max Planck Institute Biochemistry Systems Biology of Proteostasis

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Reposted by Gopal Jayaraj
Christine Mayr @christinemayr.bsky.social · 08/06/2026
Finally out in @Cellcellpress! Proteins with long IDRs are prone to misfolding during protein synthesis. This is prevented by mRNA 3′UTRs that act as mRNA-based IDR chaperones. www.cell.com/cell/fulltex...
cell.com
mRNA 3′ UTRs chaperone intrinsically disordered regions to control protein activity
Highly conserved mRNA 3′ UTRs act as co-translational chaperones for intrinsically disordered regions (IDRs), preventing inter-domain misfolding and enabling biogenesis of fully active proteins.
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Gopal Jayaraj @gopaljayaraj.bsky.social · 08/06/2026
www.cell.com/cell/abstrac...
cell.com
mRNA 3′ UTRs chaperone intrinsically disordered regions to control protein activity
Highly conserved mRNA 3′ UTRs act as co-translational chaperones for intrinsically disordered regions (IDRs), preventing inter-domain misfolding and enabling biogenesis of fully active proteins.
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Reposted by Gopal Jayaraj
Ahmad Jomaa @jomaalab.bsky.social · 13/05/2026
Excited to share our work uncovering SNOR, a ribosome-associated factor that promotes translation restart after dormancy published in Nature!! This was, as usual, a wonderful collaborative effort between our group and the Mattei Lab @simonemattei.bsky.social @embl.org www.nature.com/articles/s41...
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Reposted by Gopal Jayaraj
HHMI @hhmi-science.bsky.social · 11/05/2026
Meet NovoTags, a new class of fluorescent imaging probes that combines AI-driven protein design from #HHMIInvestigator David Baker w/ ultra-bright dyes from Janelia’s Luke Lavis, enabling scientists to watch dozens of proteins inside a cell at once — something current tools can't do: bit.ly/4noBb06
Rainbow fluorescent dyes from the Lavis Lab
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Reposted by Gopal Jayaraj
Nature Structural & Molecular Biology @natsmb.nature.com · 08/05/2026
New online: When membrane insertion sets the pace of mitochondrial translation
dlvr.it
When membrane insertion sets the pace of mitochondrial translation
Nature Structural & Molecular Biology, Published online: 07 May 2026; doi:10.1038/s41594-026-01799-3Human mitochondrial ribosomes synthesize membrane proteins while docked at the inner membrane, but how insertion feeds back onto decoding has remained unclear. A recent study reveals that nascent-chain topology and early folding within the mitoribosomal vestibule modulate elongation speed, establishing kinetic checkpoints during respiratory chain biogenesis.
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Reposted by Gopal Jayaraj
Nature Structural & Molecular Biology @natsmb.nature.com · 08/05/2026
New online: Membrane insertion of mitochondrial-encoded proteins regulates ribosome decoding speed
dlvr.it
Membrane insertion of mitochondrial-encoded proteins regulates ribosome decoding speed
Nature Structural & Molecular Biology, Published online: 07 May 2026; doi:10.1038/s41594-026-01803-wSchöndorf and Petrychenko et al. show that mitochondrial translation speed is coupled to OXA1L-mediated inner membrane insertion, with cotranslational nascent chain folding and insertion driving structural changes and translational pausing.
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Reposted by Gopal Jayaraj
EMBO @embo.org · 04/05/2026
Join scientists working on #ProteinHomeostasis in the EMBO Workshop "Proteostasis shaping health span: From protein folding to failure" in #Ericeira, #Portugal, 9–13 November 2026. Deadline: 1 September 2026 meetings.embo.org/event/26-proteost… #EMBOproteostasis #EMBOevents 🧪
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Reposted by Gopal Jayaraj
David Balchin @davidbalchin.bsky.social · 13/02/2026
Join us at the @crick.ac.uk for the 2026 meeting of the UK proteostasis community! We especially encourage students and postdocs to attend and share their work. All talks (except the keynotes) will be selected from abstracts.
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Reposted by Gopal Jayaraj
Nature @nature.com · 09/02/2026
Nature research paper: Single-molecule dynamics of the TRiC chaperonin system in vivo go.nature.com/4qZM3Cn
go.nature.com
Single-molecule dynamics of the TRiC chaperonin system in vivo - Nature
Single-particle tracking experiments in intact cells reveal dynamic co- and post-translational interactions of the TRiC–PFD chaperonin complex with client proteins during in vivo protein folding.
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Reposted by Gopal Jayaraj
rongqinxiaoxiao.bsky.social @rongqinxiaoxiao.bsky.social · 09/02/2026
Using live cell single particle tracking, we studied real time dynamics between TRiC chaperonin system and its substrates in the crowded cellular environment. Take a pook!
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Reposted by Gopal Jayaraj
Martin Kampmann @kampmann.bsky.social · 28/01/2026
Our paper is (finally) out in Cell today! CRISPR screens in iPSC-derived neurons reveal principles of tau proteostasis www.cell.com/cell/fulltex... Great collaborative effort - read more from first author @asamelson.bsky.social below:
cell.com
CRISPR screens in iPSC-derived neurons reveal principles of tau proteostasis
CRISPR screens in iPSC-derived neurons reveal that the E3 ubiquitin ligase CRL5SOCS4 ubiquitinates tau, that CUL5 expression is correlated with resilience in human Alzheimer’s disease, and that electr...
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Reposted by Gopal Jayaraj
David Balchin @davidbalchin.bsky.social · 19/01/2026
Our latest cotranslational folding story is now published @cp-molcell.bsky.social. Really cool (I think) new ideas about how exactly the ribosome directs folding and assembly to make sure complicated proteins mature efficiently in cells. www.cell.com/molecular-ce...
cell.com
The ribosome synchronizes folding and assembly to promote oligomeric protein biogenesis
Large oligomeric proteins constitute a major fraction of proteomes, but are difficult to refold in vitro, raising the question of how cells direct their biogenesis. Roeselová and Shivakumaraswamy et a...
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Reposted by Gopal Jayaraj
David Balchin @davidbalchin.bsky.social · 14/11/2025
Our story on GroEL/ES action during cotranslational folding is now published @natcomms.nature.com. Led by former-student Alzbeta Roeselova, and in collaboration with Rado Enchev's lab @crick.ac.uk. www.nature.com/articles/s41...
nature.com
GroEL/ES chaperonin unfolds then encapsulates a nascent protein on the ribosome - Nature Communications
The GroEL/ES chaperonin can act during protein synthesis to promote folding. Here, Roeselová et al. show how GroEL captures, remodels and sequesters nascent proteins in its central chamber, while they...
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Gopal Jayaraj @gopaljayaraj.bsky.social · 01/10/2025
www.nature.com/articles/s41...
nature.com
Proteotoxic stress response drives T cell exhaustion and immune evasion - Nature
A proteotoxic stress response specific to exhausted T cells, governed by AKT signaling and accompanied by increased protein translation, represents a mechanistic vulnerability and a new therapeutic target to improve cancer immunotherapies.
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Reposted by Gopal Jayaraj
David Balchin @davidbalchin.bsky.social · 19/09/2025
Our article on human multidomain protein biogenesis is now published in @natsmb.nature.com www.nature.com/articles/s41...
nature.com
The human ribosome modulates multidomain protein biogenesis by delaying cotranslational domain docking - Nature Structural & Molecular Biology
By studying dynamic folding intermediates on the human ribosome, Pellowe et al. show that newly made domains help each other to fold but do not stably interact until synthesis is complete, avoiding in...
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Reposted by Gopal Jayaraj
Martin Kampmann @kampmann.bsky.social · 16/09/2025
Apply by Oct 15 - please spread the word!
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Reposted by Gopal Jayaraj
Cole Sitron @pelletfraction.bsky.social · 10/09/2025
Why are α-synuclein aggregates in Parkinson’s disease (PD) toxic at the cell biological level? Our new study shows that α-syn fibrils hijack the ESCRT membrane repair system, triggering a feedback loop that worsens aggregation. You can find it at: authors.elsevier.com/sd/article/S...
authors.elsevier.com
ScienceDirect.com | Science, health and medical journals, full text articles and books.
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Reposted by Gopal Jayaraj
Jordan Ray @jordanray.bsky.social · 09/09/2025
I am excited to share my graduate work in the Sabatini and @bartellab.bsky.social labs. Since their discovery, we have known lysosomes possess RNase activity; however, their substrates were not known. Surprisingly we find specific RNAs are targeted for degradation! www.biorxiv.org/content/10.1...
biorxiv.org
Lysosomal RNA profiling reveals targeting of specific types of RNAs for degradation
Autophagy targets a wide variety of substrates for degradation within lysosomes. While lysosomes are known to possess RNase activity, the role of lysosomal RNA degradation in post-transcriptional gene...
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Reposted by Gopal Jayaraj
Dan Grabarczyk @dangrabarczyk.bsky.social · 28/08/2025
Glad to share the final version of our story about the UBR4 complex, an E4 ligase protein quality control hub @science.org. Now with more cryo-EM structures and a deeper dive into substrate recognition, especially escaped mitochondrial proteins @clausenlab.bsky.social www.science.org/doi/10.1126/...
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Dan Grabarczyk @dangrabarczyk.bsky.social · 27/08/2025
Happy to share our work on the structure and function of the unusual E3 ligase ZNFX1 @cp-cell.bsky.social. It uses a nucleic acid-activated transthiolation mechanism, ubiquitinating and clustering RNA to protect cells in an immune response. @clausenlab.bsky.social www.cell.com/cell/fulltex...
cell.com
A split-site E3 ligase mechanism enables ZNFX1 to ubiquitinate and cluster single-stranded RNA into ubiquitin-coated nucleoprotein particles
Grabarczyk et al. show the structure and mechanism of a non-canonical ubiquitin ligase, which is activated through nucleic-acid-induced oligomerization and is critical for cell survival during immune ...
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Reposted by Gopal Jayaraj
Alice Ting @aliceyting.bsky.social · 27/08/2025
LOV-BirA, light regulated biotin ligase, engineered by Song-Yi Lee www.sciencedirect.com/science/arti...
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Reposted by Gopal Jayaraj
Sven Lange @sven-m-lange.bsky.social · 20/08/2025
Excited to see this work published online at @cp-cell.bsky.social today! www.cell.com/cell/fulltex...
cell.com
A conserved mechanism for the retrieval of polyubiquitinated proteins from cilia
CFAP36, a conserved cilia-specific ubiquitin reader, partners with the ARL3 GTPase to enable the selective and directional retrieval of polyubiquitinated proteins from cilia, a process essential for m...
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Reposted by Gopal Jayaraj
dave dougan @douganlab.bsky.social · 20/08/2025
Complex II assembly drives metabolic adaptation to OXPHOS dysfunction | Science Advances www.science.org/doi/10.1126/...
science.org
Complex II assembly drives metabolic adaptation to OXPHOS dysfunction
Succinate dehydrogenase assembly dynamics maintains metabolic homeostasis during mitochondrial oxidative stress.
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Reposted by Gopal Jayaraj
Patricia Yuste-Checa @pyustecheca.bsky.social · 08/08/2025
Curious about the structure and functional analysis of one of the most abundant and enigmatic extracellular #chaperones and one of the highest genetic risk factor for developing late onset #Alzheimer’s disease? Check out our paper on Clusterin/ApoJ! #proteostasis #apolipoprotein rdcu.be/ezRLv
rdcu.be
Structural analyses define the molecular basis of clusterin chaperone function
Nature Structural & Molecular Biology - The authors reveal a three-domain architecture of glycoprotein clusterin and show that the hydrophobic tails are crucial for clusterin’s functions...
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Reposted by Gopal Jayaraj
Eric Chevet @ericchevet.bsky.social · 07/07/2025
#proteostasis mRNA 3′UTRs chaperone intrinsically disordered regions to control protein activity www.biorxiv.org/content/10.1...
biorxiv.org
mRNA 3′UTRs chaperone intrinsically disordered regions to control protein activity
More than 2,700 human mRNA 3′UTRs have hundreds of highly conserved (HC) nucleotides, but their biological roles are unclear. Here, we show that mRNAs with HC 3′UTRs mostly encode proteins with long intrinsically disordered regions (IDRs), including MYC, UTX, and JMJD3. These proteins are only fully active when translated from mRNA templates that include their 3′UTRs, raising the possibility of functional interactions between 3′UTRs and IDRs. Rather than affecting protein abundance or localization, we find that HC 3′UTRs control transcriptional or histone demethylase activity through co-translationally determined protein oligomerization states that are kinetically stable. 3′UTR-dependent changes in protein folding require mRNA-IDR interactions, suggesting that mRNAs act as IDR chaperones. These mRNAs are multivalent, a biophysical RNA feature that enables their translation in network-like condensates, which provide favorable folding environments for proteins with long IDRs. These data indicate that the coding sequence is insufficient for the biogenesis of biologically active conformations of IDR-containing proteins and that RNA can catalyze protein folding. ### Competing Interest Statement The authors have declared no competing interest. Pershing Square Foundation, https://ror.org/04tce9s05 G. Harold & Leila Y. Mathers Foundation National Institutes of Health, DP1GM123454, R35GM144046 Memorial Sloan Kettering Cancer Center, https://ror.org/02yrq0923, P30 CA008748
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Gopal Jayaraj @gopaljayaraj.bsky.social · 04/06/2025
www.nature.com/articles/s41...
nature.com
Probing condensate microenvironments with a micropeptide killswitch - Nature
Targeting a non-natural micropeptide ‘killswitch’ to several biomolecular condensates altered condensate compositions and revealed condensate functions in human cells
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Reposted by Gopal Jayaraj
David Balchin @davidbalchin.bsky.social · 02/06/2025
New from our lab @crick.ac.uk, in collaboration with the Enchev and Bukau labs. By studying a protein that is difficult to fold, we discover fascinating new mechanisms by which the ribosome supports protein biogenesis. www.biorxiv.org/content/10.1...
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Kurianlab @kurianlab.bsky.social · 03/06/2025
www.biorxiv.org/content/10.1... Check this from the Modic lab
biorxiv.org
HCR-Proxy resolves site-specific proximal RNA proteomes at subcompartmental nanoscale resolution
The spatial organisation of RNA condensates is fundamental for understanding of basic cellular functions, but may also provide pivotal insights into diseases. One of the major challenges to understand...
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Reposted by Gopal Jayaraj
Julie @rna-julie.bsky.social · 14/05/2025
Delighted to share paper on translational activity of 80S monosomes across different tissues in 🪰 in @narjournal.bsky.social thanks to fabulous team Albert Blandy Tayah Hopes Elton Vasconcelos @amy-turner96.bsky.social Bulat Fatkhullin Michaela Agapiou Juan Fontana academic.oup.com/nar/article/...
academic.oup.com
Translational activity of 80S monosomes varies dramatically across different tissues
Abstract. Translational regulation at the stage of initiation can impact the number of ribosomes translating each mRNA molecule. However, the translational
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Reposted by Gopal Jayaraj
Laurenz Rabl @laurenzrabl.bsky.social · 01/04/2025
doi.org/10.1515/hsz-... I am super happy to share this review as my first post on Bluesky. After submitting my PhD thesis at the start of the year, my PI Elke Deuerling suggested to write this review with her, covering many of the findings of my thesis. I am excited to see it published today!
doi.org
The nascent polypeptide-associated complex (NAC) as regulatory hub on ribosomes
The correct synthesis of new proteins is essential for maintaining a functional proteome and cell viability. This process is tightly regulated, with ribosomes and associated protein biogenesis factors...
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Gopal Jayaraj @gopaljayaraj.bsky.social · 07/03/2025
www.science.org/doi/10.1126/...
science.org
A subcellular map of translational machinery composition and regulation at the single-molecule level
Millions of ribosomes are packed within mammalian cells, yet we lack tools to visualize them in toto and characterize their subcellular composition. In this study, we present ribosome expansion micros...
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Reposted by Gopal Jayaraj
Nico Dantuma @ubiquitinneuro.bsky.social · 06/03/2025
Mitochondria a safe haven for aggregation-prone proteins? #neurodegeneration. #Parkinson. Find our latest manuscript in @biorxivpreprint.bsky.social www.biorxiv.org/content/10.1...
biorxiv.org
Mitochondria serve as a Holdout Compartment for Aggregation-Prone Proteins hindering Efficient Ubiquitin-Dependent Degradation
The accumulation of protein aggregates has been causatively linked to the pathogenesis of neurodegenerative diseases. In this study, we have conducted a genome-wide CRISPR-Cas9 screen to identify cell...
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Martin @mamueller.bsky.social · 10/02/2025
Exicted to share our latest review in @narjournal.bsky.social on how the ribosome coordinates mRNA decay with a focus on structural advances in the field. #ribosome #mRNAdecay #translation
academic.oup.com
The ribosome as a platform to coordinate mRNA decay
Abstract. Messenger RNA (mRNA) homeostasis is a critical aspect of cellular function, involving the dynamic interplay between transcription and decay proce
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Gopal Jayaraj @gopaljayaraj.bsky.social · 31/01/2025
www.cell.com/cell/fulltex...
cell.com
Long-term imaging of individual ribosomes reveals ribosome cooperativity in mRNA translation
Ribosomes cooperate through transient collisions to ensure efficient translation.
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Jakob Farnung @jakobfarnung.bsky.social · 29/01/2025
🎉Super excited to share our story on how the substrate receptor FBXO31 functions as a quality control factor by recognizing amides. This has been an amazing collaboration between Bode lab and @jcornlab.bsky.social. Special shutout goes to @matthiasmuhar.bsky.social www.nature.com/articles/s41...
nature.com
C-terminal amides mark proteins for degradation via SCF–FBXO31 - Nature
SCF–FBXO31 scans proteins for C-terminal amidation and marks them for subsequent proteasomal degradation.
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Gopal Jayaraj @gopaljayaraj.bsky.social · 21/01/2025
www.biorxiv.org/content/10.1...
biorxiv.org
Mechanism of chaperone recruitment and retention on mitochondrial precursors
Nearly all mitochondrial proteins are imported into mitochondria from the cytosol. How nascent mitochondrial precursors acquire and sustain import-competence in the cytosol under normal and stress con...
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David Balchin @davidbalchin.bsky.social · 20/01/2025
We're hiring a postdoc! Applications from any nationality welcome. Projects around protein folding in cells, ribosomes, chaperones etc. 4 yr contract, fantastic research environment @crick.ac.uk crick.wd3.myworkdayjobs.com/External/job...
crick.wd3.myworkdayjobs.com
Postdoctoral Fellow - Balchin Lab
Salary for this Role: From £43,210 with benefits, subject to skills and experience Job Title: Postdoctoral Fellow - Balchin Lab Reports to: David Balchin Closing Date: 28/Feb/2025 23.59 GMT Job Descri...
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Rashmi Agrata @rashmiagrata.bsky.social · 17/01/2025
New to #ubiquitin? Been with it for a while? Either way this review may be for you 🤩 Excited to share our review article in @molcell.bsky.social, diving deep into everything #ubiquitin Read here 👉: kwnsfk27.r.eu-west-1.awstrack.me/L0/https:%2F... @cellpress.bsky.social @wehi-research.bsky.social
'Ubiquitin Lysine-Linkages' from the review 'Ubiquitin: a structural perspective' in Molecular Cell
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Rosa Barrio Lab @rosabarrio1.bsky.social · 14/01/2025
✋Hello! Curious about endogenous targets of CRBN? Check new preprint from @rosabarrio1.bsky.social. You will also find how those substrates change their ubiquitination upon pomalidomide treatment #ubiquitin #TPD 👇👇👇 www.biorxiv.org/content/10.1...
BioE3 strategy to find substrates of E3 ligases applied to CRBN
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Sofia Ramalho @sofiaramalho.bsky.social · 08/01/2025
Beyond happy to share with you that mine and @thejoanasilva.bsky.social latest work is out in Science Advances! Thank you so much to everyone who took part in this story, especially to @liamfaller.bsky.social and Joana for all supervision. Go check it out! ☺️
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Gopal Jayaraj @gopaljayaraj.bsky.social · 09/01/2025
www.nature.com/articles/s41...
nature.com
Site-saturation mutagenesis of 500 human protein domains - Nature
Large-scale experimental analysis of Human Domainome 1, a library containing more than 500,000 missense mutation variants across more than 500 human protein domains, reveals that 60% of pathogenic mis...
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Simon Bekker-Jensen lab @bekkerjensenlab.bsky.social · 26/11/2024
Time for our first post here 🥳 Our latest paper is online 🙌 We show that UV activates the ribotoxic stress response, which causes inflammation, cell death and thickening in skin. Read about a role for the RSR separate from DNA damage signaling in response to sunburn: ✨☀️ www.cell.com/molecular-ce...
cell.com
The ribotoxic stress response drives acute inflammation, cell death, and epidermal thickening in UV-irradiated skin in vivo
The acute skin reaction to sunburn, encompassing keratinocyte cell death, inflammation, and epidermal thickening, has traditionally been ascribed to DNA damage responses. Using a mouse model deficient...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 21/11/2024
Our latest paper, a fantastic collaboration with the Mendell Lab, is out. Great work by Xiaoqiang Zhu and Victor Cruz. We uncover how tRNA structural features in the ribosomal P-site modulate co-translational mRNA decay by the CCR4-NOT complex. #RNAsky #RNAbiology #translation #ribosome #cryoEM 1/5
science.org
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