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Charikleia Karageorgiou (Clio)

@evobioclio.bsky.social
1.6K followers 968 following 163 posts

Postdoc at @UBuffalo | Gokcumen Lab Evolution, structural variants and population genetics. PhD from @uab.cat | Inversion polymorphism. biolevol.github.io

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Reposted by Charikleia Karageorgiou (Clio)
jakobheinz.bsky.social @jakobheinz.bsky.social · 01/10/2026
I’m excited to share our new preprint introducing HipHap, a tool for assigning long reads to haplotype-resolved diploid reference assemblies! With Max Marin, Matthew Meyerson, and @lh3lh3.bsky.social Preprint: www.biorxiv.org/content/10.6... 🧵 1/6
biorxiv.org
HipHap: Haplotype Assignment and Confidence Scoring for Diploid Reference Genomes
Diploid genome assemblies are now routinely available, but most read aligners were designed for haploid references, which have long been the gold standard. When reads are aligned to a diploid assembly...
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Reposted by Charikleia Karageorgiou (Clio)
Genetics Society of America @genetics-gsa.bsky.social · 29/09/2026
The September issue of #GENETICS features work from @jonj-udd.bsky.social, @jeffspence.github.io, & Co which determines how genes associated with human recessive disorders fit the predictions of the classic theory of mutation–selection balance. 🔗 buff.ly/v8FpWWA
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Reposted by Charikleia Karageorgiou (Clio)
Cedric Feschotte @cedricfeschotte.bsky.social · 24/09/2026
Thrilled to see this published today! Truly special because we made the initial discovery >15 yrs ago! We found two copies of a human gene called BC200 embedded in a human poxvirus. BC200 blurs the line between gene & transposon—both functional & mutagenic! www.science.org/doi/10.1126/... 🧵1/n
science.org
Escape of the BC200 gene to a human poxvirus reveals its persistent transposition in primates
Transposable elements mobilize within and occasionally between genomes, including from host to virus. We identified two insertions of the human BC200 noncoding RNA gene in the poxvirus molluscum conta...
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Reposted by Charikleia Karageorgiou (Clio)
Michael Hiller @hillermich.bsky.social · 23/09/2026
Happy to share results of the @bat1kgenomes.bsky.social phase 1, providing reference genomes covering 21 bat families. New insights into bat phylogeny, ancestral genome reconstruction, European origin & ancestral echolocation. Great work by a team of 100+ colleagues www.nature.com/articles/s41...
nature.com
Reference genomes and fossils revise bat family phylogeny and biogeography - Nature
An updated phylogeny of bats is presented, based on new genome assemblies and many ancient fossils and including all known bat families.
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Charikleia Karageorgiou (Clio) @evobioclio.bsky.social · 23/09/2026
Direct cell-to-cell transmission of retrotransposons
cell.com
Direct cell-to-cell transmission of retrotransposons
Retrotransposons can infect neighboring cells using a mechanism that relies on a small fusogen-like protein rather than on the envelope protein that is typically required for infection.
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Reposted by Charikleia Karageorgiou (Clio)
Peter Andersen @germline.bsky.social · 08/09/2026
We are recruiting a PhD student 🥼🙋 Topic: how germ cells bend gene expression dogmas Fly genetics + proteomics + genomics. Fully funded. Aarhus University 🇩🇰 info on the project and how to apply👇 mbg.au.dk/en/peter-and... I'd really appreciate it if you'd help spread the word. Thanks
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Reposted by Charikleia Karageorgiou (Clio)
rachellcosby.bsky.social @rachellcosby.bsky.social · 16/09/2026
Infertility affects ~1 in 6 people, and up to 30% of cases are unexplained. I am excited to present my postdoctoral work from @toddmacfarlan.bsky.social 's lab, now available as a preprint: tinyurl.com/yync6f2r addressing a possible role for the meiotic gene PRDM9 in infertility 🧵/1
Link to preprint titled: "PRDM9-mediated meiotic hotspot specification is constrained in humans despite extensive sequence diversity"
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Reposted by Charikleia Karageorgiou (Clio)
Lopes_Lab @lopeslab.bsky.social · 16/09/2026
Thrilled to share a new important study from the lab, published today in @nature.com, showing how cohesin mediates efficient replication fork plasticity and stress response, using its loop extrusion activity to promote 3D contacts on replicating DNA: www.nature.com/articles/s41...
nature.com
Cohesin reshapes replication fork contacts to aid fork slowing and reversal - Nature
Cohesin-mediated loop extrusion limits sister-fork coupling and tethers nearby replication forks under replication stress, promoting fork reversal and slowing fork progression to safeguard genome...
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Reposted by Charikleia Karageorgiou (Clio)
Polina Novikova @pnovik.bsky.social · 16/09/2026
I am happy to present our work @liverworks.bsky.social @robinburns.bsky.social @alisondawnscott.bsky.social on centromeric repeat turnovers, of which we counted three in the Arabidopsis genus:
biorxiv.org
The Nature of Centromeric Repeat Turnovers in the genus Arabidopsis
Centromeres are critical for accurate segregation of chromosomes and are often composed of megabases of tandemly arranged satellite repeats. Yet, despite their conserved function, the DNA sequence of ...
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Reposted by Charikleia Karageorgiou (Clio)
arXiv q-bio.PE Populations and Evolution @qbiope-bot.bsky.social · 14/09/2026
Jeffrey P. Spence, Roshni A. Patel: Insights into human evolution from large genetic biobanks arxiv.org/abs/2609.12297 arxiv.org/pdf/2609.12297 arxiv.org/html/2609.12297
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Reposted by Charikleia Karageorgiou (Clio)
Alexis Stamatakis @stamatak.bsky.social · 12/09/2026
The RAxML-NG v2.0 preprint is out: www.biorxiv.org/content/10.6... v2.0 features integrated model testing, fast branch support metrics, automatic parallelization, phylogenetic difficulty prediction, genotype evolution models, to name but the most important features. And it is A LOT FASTER of course
biorxiv.org
RAxML-NG 2: Automatic model selection, novel tree search heuristics, and fast branch support metrics
RAxML-NG is a widely used tool for maximum likelihood based phylogenetic inference. In the seven years since the last RAxML-NG publication, we have continuously improved and extended the code. Here, w...
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Reposted by Charikleia Karageorgiou (Clio)
Sam Yeaman @samyeaman.bsky.social · 08/09/2026
I'm looking to hire a postdoc to work on the RepAdapt + MacroMar projects, analysing genomic data from >130 species of plants, animals, and fungi (VCFs are processed, ready to go). Lots of potential for creativity and collaboration! yeamanlab.weebly.com/uploads/5/7/...
Picture shows fireweed in foreground and Mt. Lougheed in background
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Reposted by Charikleia Karageorgiou (Clio)
Petar Pajic @petarpajic.bsky.social · 02/09/2026
Our new paper is out in MBE @molbioevol.bsky.social ! Another example of how diet can shape genomes. Led by @willaguado.bsky.social! Salivary protein genes were repeatedly reshaped, including independently evolved histidine-rich repeats linked to folivory. doi.org/10.1093/molb...
doi.org
Multiscale structural evolution of proline-rich protein genes shapes primate salivary defenses
Abstract. Saliva forms the first biochemical interface with the environment, mediating dietary exposure and oral defense. Proline-rich proteins (PRPs) in s
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Reposted by Charikleia Karageorgiou (Clio)
Anton Goloborodko @golobor.bsky.social · 03/09/2026
1/ out in @science.org! We found a new asymmetry in large-scale chromosome structure: sister chromatids are shifted by hundreds of kb in the 5′→3′ direction of their inherited strands! A close collaboration w/ @gerlichlab.bsky.social , led by @flaviacorsi.bsky.social www.science.org/doi/10.1126/...
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Reposted by Charikleia Karageorgiou (Clio)
Tom Sasani @tomsasani.bsky.social · 02/09/2026
How long does DNA damage last? @aaronquinlan.bsky.social and I found evidence that lesions are transmitted from parent (P0) to offspring (F1) in C. elegans. If they segregate unrepaired for multiple cell divisions, lesions generate multi-allelism in the F1 germline. www.biorxiv.org/content/10.6...
biorxiv.org
Inherited DNA damage generates multi-allelic mutations in C. elegans
Exogenous and endogenous mutagens generate a wide variety of DNA lesions, including bulky adducts, chemical modifications, and single- or double-stranded breaks. A phenomenon called “lesion segregation,” in which lesions evade repair and persist for multiple cell divisions, has recently been documented in tumors and healthy somatic tissues from mice and humans, respectively. Persistent lesions can generate multi-allelic variants (MAVs) by serving as templates for multiple rounds of error-prone replication. By reanalyzing data from a large C. elegans mutagenesis experiment, we observed robust evidence for MAVs at a small fraction (∼0.2%) of mutated sites in the offspring of strains treated with alkylating agents. Because these sequencing data were derived from the progeny of a single F1 animal — itself the offspring of a mutagenized P0 — all mutations should be biallelic. The presence of multi-allelic variation implies that some DNA lesions are transmitted to the F1 zygote, evade repair, and are repeatedly bypassed by error-prone polymerases during embryogenesis. We suspect that many more lesions are inherited than is suggested by MAV prevalence, and that a large fraction of biallelic mutations are also caused by inherited lesions. Our results demonstrate that DNA lesions serve as durable, transgenerational templates for mutagenesis in C. elegans . We speculate that lesion segregation in the early embryo may be a source of mosaicism and genetic diversity in humans, as well. ### Competing Interest Statement The authors have declared no competing interest. National Institutes of Health, https://ror.org/01cwqze88, R01HG012252
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Reposted by Charikleia Karageorgiou (Clio)
Genetics Society of America @genetics-gsa.bsky.social · 01/09/2026
🧬 Do genes associated with human recessive disorders fit the predictions of this classic model? Find the latest in #GENETICS where @jonj-udd.bsky.social, @jeffspence.github.io & Co measure observed frequencies to address the question. 🔗 buff.ly/1X2Youy
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Reposted by Charikleia Karageorgiou (Clio)
Evolution Letters @evolletters.bsky.social · 31/08/2026
Recombination helps evolution—but it can also cause mutations. New theory shows that even small increases in mutation near crossovers can oppose the evolution of higher recombination rates. By @sarperotto.bsky.social and Bret Payseur academic.oup.com/evlett/advan...
academic.oup.com
Elevated mutation near crossovers inhibits the evolution of recombination
Abstract. Recombination diversifies offspring genomes and helps ensure chromosome segregation during meiosis. Mutation rates are elevated near crossovers d
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Reposted by Charikleia Karageorgiou (Clio)
Emma Dann @emmamarydann.bsky.social · 28/08/2026
Our work on systematic perturb-seq of primary human T cells is now out in Cell 🎉 www.cell.com/cell/fulltex... It's been a privilege to work with @ronghuizhu.bsky.social between @jkpritch.bsky.social @marsonlab.bsky.social labs, with a dream-team of co-authors ❤️ Highlights in preprint thread👇
cell.com
Genome-scale perturb-seq in primary human CD4+ T cells maps context-specific regulators of T cell programs and human immune traits
A dynamic atlas of gene regulation was generated by perturbing every expressed gene across 22 million primary human CD4+ T cells under resting conditions and following re-stimulation. The resulting ma...
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Reposted by Charikleia Karageorgiou (Clio)
Arvid Ågren @arvidagren.bsky.social · 26/08/2026
Why grouping intralocus and interlocus phenomena under one umbrella of “sexual conflict” is a mistake. Insightful paper from @imprintedgene.bsky.social, @andygardner.bsky.social y.social, Tracey Chapman, and @jennyperry.bsky.social yperry.bsky.social. royalsocietypublishing.org/rspb/article...
royalsocietypublishing.org
Sexual conflict and sexual pleiotropy
Abstract. Natural selection might favour brightly coloured males and drab females. A male and a female might disagree about whether to mate. Such tensions
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Reposted by Charikleia Karageorgiou (Clio)
Nature @nature.com · 26/08/2026
Nature research paper: Long-read sequencing reveals pre-meiotic gene conversion in sperm go.nature.com/4zEnrnr
go.nature.com
Long-read sequencing reveals pre-meiotic gene conversion in sperm - Nature
Single-molecule long-read sequencing of human sperm reveals variation in recombination across donors and that a substantial fraction of non-crossover gene conversions arises before meiosis, distinct from PRDM9-driven recombination and associated with fragile sites.
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Charikleia Karageorgiou (Clio) @evobioclio.bsky.social · 26/08/2026
New @heredityjournal.bsky.social podcast about structural variation and our recent Heredity special issue, "Functional and Adaptive Effects of Genomic Structural Variation"
shows.acast.com
Special Issue on Structural Variation | Heredity Podcast
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Reposted by Charikleia Karageorgiou (Clio)
Graham Coop @gcbias.bsky.social · 12/08/2026
Excited for @gabrielesgarlata.bsky.social’s new preprint on the Genome-Wide Effect of Drift and Selection over a Single Generation 1/n www.biorxiv.org/content/10.6...
biorxiv.org
The Genome-Wide Effect of Drift and Selection over a Single Generation
The relative importance of genetic drift versus selection to evolutionary change has long been debated. This debate has mainly focused over long-time-scales (e.g. hundreds of thousands of generations)...
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Reposted by Charikleia Karageorgiou (Clio)
bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 12/08/2026
No signal of a super-archaic origin of the Denisovan AMBN gene, a comment on the protein affinity of Homo erectus and Denisovan enamel proteins. www.biorxiv.org/content/10.64898/20…
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Reposted by Charikleia Karageorgiou (Clio)
Adam Phillippy @aphillippy.bsky.social · 06/08/2026
For the past 30 years, “whole-genome sequencing” has been a misnomer. Today the T2T Consortium publishes a dozen papers heralding a future of truly complete genomes for humans and nearly any vertebrate 👨‍🔬🐒🐦🐀🦒🐎🫏🐹🐟 (sorry, no salamanders): www.cell.com/consortium/t... 🧵[1/15]
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Reposted by Charikleia Karageorgiou (Clio)
Kieran Samuk @ksamuk.bsky.social · 03/08/2026
Just posted: a group paper describing major updates to my software pixy, for population genetic summary statistics. www.biorxiv.org/content/10.6... New since 2021: arbitrary ploidy, multiallelic sites, missingness-aware Watterson's θ and Tajima's D, Hudson's FST, multicore execution!
Alt text: Schematic of the pixy workflow. Left, inputs: a bgzipped, tabix- or CSI-indexed VCF with callable sites supplied as an all-sites VCF or gVCF blocks, a populations file, and optional BED and sites files. Centre, core: windowing by fixed width, BED or region; statistic selection; options for Hudson's FST, multiallelic SNPs, automatic ploidy detection and multicore execution. Right, outputs: one TSV per statistic for pi, dxy, FST, Watterson's theta and Tajima's D, with raw count columns for exact aggregation. Bottom, development: GitHub fork and pull request, local checks with ruff, mypy and pytest, continuous integration across Python 3.10 to 3.14, and distribution through conda-forge. Features new since the 2021 release are badged "new".
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Reposted by Charikleia Karageorgiou (Clio)
Arnau Sebé-Pedrós @arnausebe.bsky.social · 03/08/2026
Happy to share the final version of our study on the evolution of chromatin states across eukaryotes, out today in @natgenet.nature.com Led by @crisnava.bsky.social and @seanamontgomery.bsky.social www.nature.com/articles/s41... Some highlights below
nature.com
Diversity and evolution of chromatin regulatory states across eukaryotes - Nature Genetics
This study introduces iChIP2, a low-input chromatin immunoprecipitation followed by sequencing method that profiles histone post-translational modifications (hPTMs) simultaneously across diverse eukar...
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Charikleia Karageorgiou (Clio) @evobioclio.bsky.social · 31/07/2026
science.org
Recovering signatures of archaic hominin introgression using ancestral recombination graphs
Admixture between modern humans and extinct hominins has shaped the genomes of present-day individuals, but reconstructing this history has been constrained by the scarcity of archaic samples and unad...
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Reposted by Charikleia Karageorgiou (Clio)
Di Jiang @dijiang319.bsky.social · 30/07/2026
Why is the X chromosome rich in L1 mobile elements? @science.org X-chromosome inactivation draws L1 mutagenesis to the human X chromosome | Science www.science.org/doi/10.1126/...
science.org
X-chromosome inactivation draws L1 mutagenesis to the human X chromosome
X-chromosome inactivation (XCI) enables gene dosage compensation in XX eutherians. Long interspersed element-1 (LINE-1 or L1) retrotransposons are unusually abundant on the human X chromosome and are ...
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Reposted by Charikleia Karageorgiou (Clio)
Gokcumen Lab @gokcumenlab.bsky.social · 30/07/2026
Typeset version of new paper out in @genomebiolevol.bsky.social. Link: academic.oup.com/gbe/article/... We identified segmental duplications in genomes from 117 vertebrate species (thanks to @vertebrategenomes.bsky.social ). We describe the properties and evolution of segmental duplications.
academic.oup.com
Genomes From 117 Vertebrate Species Reveal Rapidly Evolving Segmental-Duplication Landscapes
Abstract. Segmental duplications are major drivers of evolutionary innovation; yet, their dynamics across vertebrates remain poorly understood. Here, we id
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Reposted by Charikleia Karageorgiou (Clio)
Gokcumen Lab @gokcumenlab.bsky.social · 29/07/2026
New paper with @rajivmccoy.bsky.social @ajhgnews.bsky.social. Bottom line: Polymorphic gene duplications absent in the reference genome can produce spurious trans-eQTLs, and we propose a method to identify these false positives. authors.elsevier.com/c/1nWChgeXHnOF
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Reposted by Charikleia Karageorgiou (Clio)
Ben Langmead @benlangmead.bsky.social · 29/07/2026
📢 Genome Informatics 2026 (Hinxton UK + virtual, 2–4 Dec) is coming! Some confirmed speakers now listed: coursesandconferences.wellcomeconnectingscience.org/event/genome... Early-bird registration & bursary deadlines: 7 Sept. Abstract deadline: 5 Oct. Please submit your work & join us!
Wellcome Genome Campus aerial shot
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Reposted by Charikleia Karageorgiou (Clio)
Mahul Chakraborty @mahulchak.bsky.social · 27/07/2026
Beyond providing insight into the centromere paradox, this work demonstrates that complete chromosome reconstruction is now possible from wild-caught flies, opening new opportunities for population, functional, and quantitative genomics in Drosophila. Preprint here: www.biorxiv.org/content/10.6...
biorxiv.org
A conserved architectural domain shapes centromere evolution in Drosophila
Centromeres ensure faithful chromosome segregation despite being embedded within rapidly evolving repetitive DNA, a contradiction known as the centromere paradox. While centromere identity is defined ...
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Reposted by Charikleia Karageorgiou (Clio)
Ian Henderson @hendersi.bsky.social · 25/07/2026
CRISPR-mediated centromere fission generates neochromosomes with distorted meiotic inheritance in Arabidopsis biorxiv.org/content/10.6... new preprint from us - includes changing the Arabidopsis karyotype from 5 -> 6 chromosomes using Cas9 & outcomes of 5/6 chromosome hybrid meiosis
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Charikleia Karageorgiou (Clio) @evobioclio.bsky.social · 21/07/2026
Only 3 days left to submit an abstract for the Great Lakes Annual Meeting of Evolutionary Genomics! The abstract submission deadline is July 24; registration will remain open until August 10. GLAM will be held on August 15, at the University at Buffalo. The participation is capped at 100 people.
forms.gle
GLAM-Evogen 2026 Registration and Abstract Submission Portal
GLAM-Evogen will be held on August 15, 2026 at University at Buffalo, NY. We aim to bring together faculty and trainees from a range of backgrounds with a particular focus on work at the interface bet...
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Reposted by Charikleia Karageorgiou (Clio)
Peiwei Chen @peiwei-chen.bsky.social · 17/07/2026
How do transposons jump when they’re released from host control? I babysat two chromosomes for 2 years, making sure they are ok without most piRNAs. Here’s what we found & excited to share my 1st postdoc paper: “piRNA loss unleashes episodic transposition bursts” www.biorxiv.org/content/10.6...
biorxiv.org
piRNA loss unleashes episodic transposition bursts
In Metazoa, transposon expression is suppressed by the piRNA pathway, and disruption of this pathway leads to rampant transposon expression. However, it remains unclear whether increased transposon ex...
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Charikleia Karageorgiou (Clio) @evobioclio.bsky.social · 06/07/2026
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Reposted by Charikleia Karageorgiou (Clio)
Peter Laurin @peterlaurin.bsky.social · 30/06/2026
Super excited to share new work with my advisor @nanditagarud.bsky.social! We re-examine the rapidity of adaptation in the human gut microbiome and begin to characterize the adaptive architecture of selective sweeps spreading across human guts. www.biorxiv.org/content/10... 1/n:
biorxiv.org
Complex adaptive architectures constrain the pace of adaptations sweeping across human gut microbiomes
Recent work has shown that commensal gut bacteria can evolve rapidly within hosts on short timescales of days to months, fueled by the enormous mutational input generated daily in the microbiome. Yet ...
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Reposted by Charikleia Karageorgiou (Clio)
Darren Obbard @darrenobbard.bsky.social · 29/06/2026
Starting as I mean to go on at #SMBE2026: DROSOPHILA!!!!
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Reposted by Charikleia Karageorgiou (Clio)
Genetics Society UK @gensocuk.bsky.social · 26/06/2026
Congratulations to Prof Richard Durbin, winner of the 2026 Genetics Society Medal! His pioneering work in computational genomics has transformed how we analyse and understand genome sequences.
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Reposted by Charikleia Karageorgiou (Clio)
Megan Dennis @mydennis.bsky.social · 26/06/2026
Our previously preprinted study "Influence of cis-regulatory elements on expression divergence in human segmental duplications" is now published in @genomeresearch.bsky.social! Please check it out: genome.cshlp.org/content/earl...
genome.cshlp.org
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Reposted by Charikleia Karageorgiou (Clio)
Mateja Hajdinjak @matejahajdi.bsky.social · 24/06/2026
Our late Neandertal paper is officially out! 💀❤️🧬 www.nature.com/articles/s41... It was years in the making, a tremendous feat spearheaded by our PhD student Alba Bossoms Mesa and co-led by @janetk.bsky.social and @benmpeter.bsky.social
nature.com
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prathitha.bsky.social @prathitha.bsky.social · 23/06/2026
Excited to share our new preprint, "Inference of elevated mutation rates and variant effects using 700k exomes"! - www.biorxiv.org/content/10.6... Using gnomAD v4, we estimate per-variant missense selection coefficients, and find loss-of-function (LoF) mutations with enhanced mutation rates.
biorxiv.org
Inference of elevated mutation rates and variant effects using 700k exomes
Genomic sequencing is now widely accessible for genetic diagnostics and is emerging as a component of newborn screening. This technological development generates the need to characterize incoming muta...
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Reposted by Charikleia Karageorgiou (Clio)
Luane Landau @lulandau.bsky.social · 23/06/2026
Come to my talk today at 2:30 PM in the Expression/Transcriptomics session #Evol2026 I’ll talk about how gene duplication and regulatory architecture drive the evolution of new traits in salivary glands, and hopefully convince you that this is a cool system for studying the evol of gene expression!
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Jeff Spence @jeffspence.github.io · 22/06/2026
Excited to see @jonj-udd.bsky.social's fantastic work out @genetics-gsa.bsky.social. Selection in _heterozygotes_ is the primary force shaping allele frequencies of loss-of-function mutations in humans, even in genes only associated with purely recessive diseases. 🧪🧬 doi.org/10.1093/gene...
doi.org
Allele Frequencies at Recessive Disease Genes are Mainly Determined by Pleiotropic Effects in Heterozygotes
Abstract. The classic theory of mutation-selection balance predicts the equilibrium frequency of genetic variation under negative selection. The model pred
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Charikleia Karageorgiou (Clio) @evobioclio.bsky.social · 19/06/2026
A few snippets from "Talk Nerdy to Me" last night! Thank you to everyone who showed up, asked questions and supported our speakers!
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Charikleia Karageorgiou (Clio) @evobioclio.bsky.social · 19/06/2026
We are excited to announce that the 2026 Great Lakes Annual Meeting of Evolutionary Genomics (GLAM-EvoGen) will take place on Saturday, August 15, 2026 at the University at Buffalo. More information is available on our website: gokcumenlab.org/glam2026/ @gokcumenlab.bsky.social
gokcumenlab.org
GLAM2026 – Gokcumen Lab
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bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 19/06/2026
Joint dog and wolf genealogies reveal the evolution of the canine genome www.biorxiv.org/content/10.64898/20…
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bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 17/06/2026
Transposable elements underlie chromosomal fusions and fissions in a highly species-rich group of butterflies www.biorxiv.org/content/10.64898/20…
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Reposted by Charikleia Karageorgiou (Clio)
Cedric Boeckx @cedricboeckx.bsky.social · 17/06/2026
Great resource for comparative genomics: A Curated Genome-Scale Nucleotide Diversity Panel of Non-Human Primates 🧪🧬 www.biorxiv.org/content/10.6...
biorxiv.org
A Curated Genome-Scale Nucleotide Diversity Panel of Non-Human Primates
Background: Primates constitute one of the most phylogenetically and ecologically diverse Eutherian mammalian orders, with a central role in advancing our knowledge of human evolution, speciation proc...
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Reposted by Charikleia Karageorgiou (Clio)
Heng Li @lh3lh3.bsky.social · 16/06/2026
Minibwa is a hybrid of bwa-mem and minimap2 and the successor of bwa-mem for short-read mapping. ~4X/2.5X as fast as bwa-mem/bwa-mem2 for WGS reads at comparable accuracy. Native support of directional bisulfite-seq. Applicable to long reads. Preprint at arxiv.org/abs/2606.15357
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