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alison scott

@alisondawnscott.bsky.social
700 followers 398 following 13 posts

trees, evolution, chromosomes, polyploidy, evolution of complex genomes @ MPIPZ

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Reposted by alison scott
Dr. Sarah Carey @scarey.bsky.social · 29/09/2026
I am thrilled to share our pre-print for CBS-tools: a k-mer based analysis that utilizes whole-genome sequencing of a few sex-identified isolates to guide users from the discovery of the heterogametic sex through identifying the sex-determination region www.biorxiv.org/content/10.6...
biorxiv.org
Identifying, phasing, and structurally annotating sex chromosomes for genome assemblies using CBS-tools
A complete reference genome for species with chromosomally-determined separate sexes should contain scaffolds for all sex chromosome homologs. However, sex chromosomes present distinct computational c...
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Reposted by alison scott
Genetics Society of America @genetics-gsa.bsky.social · 24/09/2026
A comparative genomic analysis in #G3journal identifies the relationships between species traits, such as dominant reproductive mode, distribution size, and generation length, and the abundance and spatial distribution of transposable elements in lichenized fungi. 🍄 🔗 buff.ly/jL3wCt0
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Femke de Jong @plantenzo.bsky.social · 22/09/2026
In this week’s Plant & Zo weekly roundup I also talk about what thigmotropism is and this week’s scientific articles and plant science in the media. plantenzo.substack.com/p/new-clues-... 🧪 #PlantScience
plantenzo.substack.com
New clues on Norway spruce reproduction
In weekly roundup #38-2026 I also talk about what thigmotropism is and this week’s scientific articles and plant science in the media
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José Cerca @naturalselection.bsky.social · 22/09/2026
V happy about this one (@brentcemerson.bsky.social @biodiversitysmns.bsky.social @hernmoral.bsky.social)et al Species have survived on oceanic islands for Mya despite occupying small geographic areas, facing environmental calamities and having low Ne. We discuss this w/ a focus on conservation. 1/2
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Yuan He @yuanhejhu.bsky.social · 22/09/2026
A big week for the lab! Two new papers on how cells repair DNA double-strand breaks: one on getting NHEJ started in chromatin, one on processing the ends before ligation. Years of work by a fantastic team.
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Max Planck Institute for Plant Breeding Research @mpipz.bsky.social · 17/09/2026
📣📣Paper Alert! New paper @nature.com from the Marques group @amarques.bsky.social and colleagues on Rhynchospora tenuis - 🌿a plant that reproduces sexually but has completely lost the reshuffling of DNA🧬 Congratulations! 👏 🥳 Read more👉 www.mpipz.mpg.de/pr-marques-2... www.nature.com/articles/s41...
nature.com
Sex without crossovers mimics clonal reproduction in Rhynchospora tenuis - Nature
Rhynchospora tenuis undergoes obligate, genome-wide achiasmy in both male and female meiosis.
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Reposted by alison scott
Soni Lacefield @lacefieldlab.bsky.social · 21/08/2026
Excited to share this review that @needhibhalla.bsky.social and I wrote on meiotic checkpoints! www.annualreviews.org/content/jour...
annualreviews.org
Tuning Meiotic Checkpoints: Evolutionary Costs and Mechanistic Trade-Offs
In this review, we discuss three meiotic checkpoints—the DNA damage response, the pachytene checkpoint, and the spindle checkpoint—and highlight their similarities and differences across diverse syste...
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Sarah Jose (JoseSci) @sarahjose.bsky.social · 18/09/2026
Wild crop relatives are such an amazing genetic resource! These @plosone.org authors report post-domestication hybridising between cultivated bananas and wild relatives, which might help crops adapt to local conditions 🍌🌿🔬 #plantsci #agriculture #plantscience doi.org/10.1371/jour...
doi.org
Beyond domestication: The unexpected contribution of native Musa wild relatives to cultivated banana diversity in Mainland Southeast Asia
The diversity of cultivated bananas remains partially unknown, whereas cultivars with suitable adaptive traits could address the drastically increasing biotic and abiotic constraints on banana product...
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Reposted by alison scott
Genetics Society of America @genetics-gsa.bsky.social · 17/09/2026
🧬🌱 Using QTL mapping, a new study characterizes #Sorghum diploid and tetraploid interspecific families to understand how polyploid-derived chromosomes behave when returned to diploidy. Find out more in the September issue of #G3journal 🔗 buff.ly/BpWEuP8
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Annaliese Mason @annaliesemason.bsky.social · 17/09/2026
My faculty is advertising a tenured open-call #cropscience / #plantscience professorship linked to the PhenoRob Excellence Cluster at Uni Bonn, Germany - apply until 30th Sep :) www.uni-bonn.de/de/universit...
uni-bonn.de
W2 Professorship within the Cluster of Excellence PhenoRob
W2 Professorship
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Polina Novikova @pnovik.bsky.social · 16/09/2026
I am happy to present our work @liverworks.bsky.social @robinburns.bsky.social @alisondawnscott.bsky.social on centromeric repeat turnovers, of which we counted three in the Arabidopsis genus:
biorxiv.org
The Nature of Centromeric Repeat Turnovers in the genus Arabidopsis
Centromeres are critical for accurate segregation of chromosomes and are often composed of megabases of tandemly arranged satellite repeats. Yet, despite their conserved function, the DNA sequence of ...
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Robin Burns @robinburns.bsky.social · 16/09/2026
It was a lot of fun working together on centromere evolution across the entire Arabidopsis genus. Turnovers, demographic history, centromere drive and repeat invasion in hybrid polyploids—there’s plenty to sink your teeth into!
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Evolution Letters @evolletters.bsky.social · 31/08/2026
Recombination helps evolution—but it can also cause mutations. New theory shows that even small increases in mutation near crossovers can oppose the evolution of higher recombination rates. By @sarperotto.bsky.social and Bret Payseur academic.oup.com/evlett/advan...
academic.oup.com
Elevated mutation near crossovers inhibits the evolution of recombination
Abstract. Recombination diversifies offspring genomes and helps ensure chromosome segregation during meiosis. Mutation rates are elevated near crossovers d
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MEPGT @mepgt.bsky.social · 30/08/2026
Very important paper by @phylogenetrips.bsky.social "Genes and sites under adaptation at the phylogenetic scale also exhibit adaptation at the population-genetic scale" | PNAS www.pnas.org/doi/10.1073/...
pnas.org
Genes and sites under adaptation at the phylogenetic scale also exhibit adaptation at the population-genetic scale | PNAS
Adaptation in protein-coding sequences can be detected from multiple sequence alignments across species or alternatively by leveraging polymorphism...
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Max Planck Institute for Plant Breeding Research @mpipz.bsky.social · 18/08/2026
🔬Big news🥳 We’re excited to welcome Prof. Dr. Rosa Lozano-Durán as new Director and head of the Department of Plant Virology @mpipz.bsky.social Her research focuses on how plant viruses interact with their hosts. 🎉Welcome to MPIPZ, Rosa 🌿🌱 www.mpipz.mpg.de/5842514/loza...
mpipz.mpg.de
The Max Planck Institute for Plant Breeding Research welcomes Prof. Dr. Rosa Lozano-Durán as new director
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Colin Carlson @colincarlson.bsky.social · 10/08/2026
I wrote about a reason not to use generative AI in your writing that I haven't seen anyone talking about. Once I realized this, banning GenAI in our lab's writing became a no-brainer. Feel free to share, I think this is probably useful especially for trainees: www.carlsonlab.bio/thoughts/the...
carlsonlab.bio
The only reason you’ll ever need not to write with AI — The Carlson Lab
Over the last year, our lab has been developing a policy on AI use. To do this, we did three main things: We read a lot of academic publications and tech news. We set up an #ai channel on our la...
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Chris Fiscus @fiscuscj.bsky.social · 06/08/2026
New paper out in PNAS! 🍇🧬 Vitis phylogenomics is a tangled vine. Highlights: • ~14% of the average grape genome comes from introgression • Two classic “hybrid species” are better described as hybrid swarms • Repeated adaptation is fueled by introgression and standing genetic variation
pnas.org
The dynamics of introgression and parallel adaptation across North American Vitis species | PNAS
Hybridization between species can contribute to parallel adaptive events. However, the prevalence of introgression is rarely measured across multip...
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Leibniz IPK @leibnizipk.bsky.social · 05/08/2026
We are delighted to announce the upcoming Gatersleben Research Conference “Genes, Chromosomes, and Genomes in Plants”, organized in partnership with the GPZ groups ‘Cytogenetics’ and ‘Genome Analysis’. When? November 3–5, 2027 Where? @leibnizipk.bsky.social, Germany Stay tuned for further updates!
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Ana Bedoya @botana-bedoya.bsky.social · 04/08/2026
If you are planning for #Botany2027 and did or did not attend #Botany2026, fill out this form if you need childcare!! docs.google.com/forms/d/e/1F... please!! This year there was no childcare and the nursing room is more a custodian closet without a lock, AC, water/sink+light goes off very 5 mins
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Christian Landry @christianlandry.bsky.social · 04/08/2026
Our latest contribution on #regulatoryevolution in which we show that the shape of fitness functions and the distribution of mutational effect sizes jointly limit adaptation by regulatory mutations. Led by @simonaube.bsky.social www.nature.com/articles/s41...
nature.com
The shape of fitness functions and the distribution of mutational effect sizes jointly limit adaptation by regulatory mutations - Nature Ecology & Evolution
Saturation mutagenesis of the FCY1 promoter in budding yeast shows that adaptation to 5-fluorocytosine is not accessible through single cis-regulatory mutations, despite large mutational effects on pr...
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alison scott @alisondawnscott.bsky.social · 25/07/2026
@robinburns.bsky.social has been chopping up thaliana chromosomes… very cool to see this written up!
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raphmercier.bsky.social @raphmercier.bsky.social · 24/07/2026
Hot off the press (so to speak)! Where we described new factors that inhibit meiotic crossovers near centromeres rdcu.be/fvHfe thread👇
rdcu.be
The deSUMOylase SPF2 and the cohesin regulators SGO2 and CTF18 suppress crossovers near centromeres
Nature Plants - Gamboa et al. identified three proteins that restrict meiotic crossovers near centromeres. This finding suggests that cohesion regulation plays a role in this suppression and...
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Lena Struwe @drgentian.bsky.social · 21/07/2026
"Hence our dismal conclusion: rather than finding that LLMs free us to do a better job of what we were doing before they came along, they shift scientific incentives (and the playing field of academic competition) in ways that compel us to do more and more, faster and faster, less and less well."
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New Phytologist @newphyt.bsky.social · 20/07/2026
Cretaceous moss–cyanobacteria association reveals trophic interactions in polar forests of Antarctica Walker et al. habitualb.bsky.social nph.onlinelibrary.wiley.com/doi/10.1111/...
Kimmerera cyanifera gen. et sp. nov. with associated cyanobacteria, holotype UWBM 116051.
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Darren J. Parker @darrenjparker.bsky.social · 16/07/2026
Our new paper is out! Congrats to all involved. Dosage compensation and meiotic sex chromosome inactivation are maintained under relaxed selection | PNAS www.pnas.org/doi/10.1073/...
pnas.org
Dosage compensation and meiotic sex chromosome inactivation are maintained under relaxed selection | PNAS
Dosage compensation and meiotic sex chromosome inactivation (MSCI) are key mechanisms regulating gene expression from the X chromosome in male-hete...
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Mario Vallejo-Marin @nicrodemo.bsky.social · 06/07/2026
PhD Position at Uppsala University. Sophie Karrenberg’s Lab. the project is about sex chromosome evolution in plants. Come join us! Deadline 22 July. www.uu.se/en/about-uu/...
uu.se
PhD position in evolutionary genomics - Uppsala University
PhD position in evolutionary genomics, Department of Ecology and Genetics, Uppsala University
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alison scott @alisondawnscott.bsky.social · 04/07/2026
an absolute highlight of #SMBE2026 in my book
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moicoll.bsky.social @moicoll.bsky.social · 30/06/2026
Interactive schedule (2.0) for SMBE2026! Enjoy the conference #SMBE2026 moicoll.github.io/SMBE2026_sch...
moicoll.github.io
SMBE 2026 — Program & Posters
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Vincent CASTRIC @vincentcastric.bsky.social · 29/04/2026
Ever wondered what makes some alleles dominant (A) and others recessive (a) ? In our new paper, we explored how a series of recently discovered "dominance modifiers", genetic elements that have long remained elusive, achieve their regulatory function. journals.plos.org/plosgenetics...
journals.plos.org
Dominance modifiers at the Arabidopsis self-incompatibility locus retain proto-miRNA features and act through non-canonical pathways
Author summary Many plants avoid self-fertilization through a system of self-incompatibility, which allows them to recognize and reject their own pollen. In plants like those in the Arabidopsis family...
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alison scott @alisondawnscott.bsky.social · 29/06/2026
enjoying @eleanoreritter.bsky.social’s talk on TEs in selfers at #SMBE2026 and her comment that Mimulus “has kind of a cult following in the US”
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Saeed Jones @theferocity.bsky.social · 28/06/2026
I’m so excited for y’all to listen to my conversation with biologist Beronda Montgomery about her book “When Trees Testify: Science, Wisdom, History, and America’s Black Botanical Legacy”! She’s the absolute best!
open.spotify.com
The Trees Saw Everything
Vibe Check · Episode
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Botanical Society of America @botsocamerica.bsky.social · 25/06/2026
Taxonomic reassessment of #fossil #Sequoia & Protosequoia from the Upper Miocene of Central Honshu, Japan, with implications for leaf morphological variation in extant S. sempervirens New #AJB research by Shun Ikeda & Arata Momohara doi.org/10.1002/ajb2... #botany #paleobotany #drought
Epitype specimen of Sequoia primaria comb. nov., preserving an immature seed cone, densely branched shoots covered with small scale-like leaves, and a few small, narrow, flattened leaves.
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Karolina Heyduk @kheyduk.bsky.social · 24/06/2026
I'm very excited and so grateful to receive an NSF CAREER award - we'll be testing ideas about how CAM evolves using C3+CAM intermediate species and teaching students how plant physiology and genomics can simultaneously inform our understanding of plant biodiversity. www.nsf.gov/awardsearch/... 1/2
nsf.gov
Award Details - NSF Award Search
Find award details and explore award abstracts and publications.
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Botanical Society of America @botsocamerica.bsky.social · 22/06/2026
From the #AppsPlantSci Phylogenetic Networks issue Detecting introgression from phylogenetic invariant site patterns using #MachineLearning (by @patrickmckenzie.bsky.social & @daeaton.bsky.social) doi.org/10.1002/aps3... #botany #plantscience #evolution #neuralnetwork #phylogenetics
Figure illustrating how a signal of introgression manifests differently in site pattern frequencies across distinct subtrees, with panels (k) and (l) demonstrating how this signal can identify important features and separate introgressive scenarios. Panels (a-j) each display a distinct 4-taxon subset of a 5-taxon tree, with (a-e) showing introgression from taxon 3 to taxon 1, and with (f-j) showing introgression from taxon 1 to taxon 3. Each panel (a-j) has a corresponding heatmap matrix representing site pattern frequencies, with cells colored red (increased) or blue (decreased) to represent deviation from coalescent expectations due to the introgressive edge. Panel (k) shows a heatmap matrix of feature importances inferred using a random forest model, with important features including, but not limited to, ABBA and BABA site patterns. Panel (l) shows a scatterplot on t-SNE dimension axes, with distinct colored clusters corresponding to different introgressive (source, destination) scenarios. Credit: Patrick McKenzie and Deren Eaton
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Angela Hancock @ahancock.bsky.social · 19/06/2026
New paper led by Célia Neto presenting a multiparent intercross population (and trait mapping) from Cape Verde Arabidopsis parents
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Stefan A. Rensing @rensingstefan.bsky.social · 18/06/2026
Updated @theplantjournal.bsky.social guidelines: avoid the use of terms such as “basal”, “early diverging lineage”, “primitive”, “ancestral plant”, “lower and higher plants” [..] recommends the use of specific terms such as “bryophytes”, “vascular plants” [..] onlinelibrary.wiley.com/page/journal...
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Journal of Evolutionary Biology @jevbio.bsky.social · 26/05/2026
Chromosomal rearrangements: tempo and mode of karyotype evolution in Scarabaeoidea @seanchien.bsky.social & Heath Blackmon @tamu.bsky.social doi.org/10.1093/jeb/...
doi.org
Chromosomal rearrangements: tempo and mode of karyotype evolution in Scarabaeoidea
Abstract. Karyotype evolution, including changes in chromosome number and structure, is a fundamental process that can influence genome organization and sp
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Annals of Botany @annbot.bsky.social · 26/05/2026
📢 New deadline: submissions for "Gnetales - Controversies of Seed Plant Evolution" Focus Issue are now open until 31 July 2026 We invite studies using Gnetales to address key questions in seed plant evolution & encourage new research on this lineage @steffibohny.bsky.social 🔗 botany.fyi/w59vvp
Promotional graphic for an Annals of Botany Focus Issue titled “Gnetales – Controversies of Seed Plant Evolution.” The design features olive-green text on the left with the names of guest editors Stefanie M. Ickert-Bond, Cecilia Zumajo-Cardona, and Dimitry Sokoloff, and a submission deadline of July 31, 2026. On the right is a close-up photograph of Gnetales reproductive structures with soft green and brown tones. The Annals of Botany logo appears at the bottom right.
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Ralf Reski @reskilab.bsky.social · 21/05/2026
Good news for moss lovers! There will be a 2nd edition "Mosses of Europe". Pre-orders are possible from July 15 on. Mosses of Europe is one of the most comprehensive works ever made. It shows around 1250 moss taxa of Europe, illustrated by more than 10.000 photos. mossesofeurope.com
mossesofeurope.com
MossesofEurope
Mosses of Europe is the most comprehensive reference work on European mosses. This 3 volume set covers identification, taxonomy and detailed descriptions, supported by high quality photographs.
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Terezie Mandakova @terimandakova.bsky.social · 18/05/2026
New review: Why Boechera? #Boechera is the only apomictic model where apomixis operates at the diploid level - a game changer for understanding and engineering clonal seed reproduction. link.springer.com/protocol/10.... @ceitec.eu @uebscimuni.bsky.social
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Science Magazine @science.org · 09/05/2026
Breaking news: Indiana University plant microbiologist Roger Innes has been locked out of his laboratory by the school in response to a request by one of his federal funders. The move comes after Innes complained about the government’s prosecution of Chinese postdocs. scim.ag/4tsDqRr
scim.ag
After USDA request, Indiana plant biologist locked out of lab by school
Move comes after Roger Innes complained about the government’s prosecution of Chinese postdocs
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LSU College of Science @lsuscience.bsky.social · 07/05/2026
From small white blooms to bold “hot lips,” wild coffee plants keep reinventing their flowers. Across 650+ species, showy blooms have evolved at least 10 times. Dr. Lagomarsino is heading to Colombia as a Fulbright Scholar to find out why. 🔗 lsu.edu/science/news... @lsuresearch.bsky.social
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Schnittger Lab @schnittger-lab.bsky.social · 06/05/2026
Finally, here it is: after 12 years, and driven by the incredible hard work and innovation of two Ph.D. students, Bingyan Hu and Maria Prusicki, with biomathematical support from Katarina Stahlmann (UKE) — "A cytological framework of female meiosis in Arabidopsis". academic.oup.com/plcell/artic...
academic.oup.com
A cytological framework of female meiosis in Arabidopsis
Live-cell imaging reveals characteristic cytological stages of female meiosis in Arabidopsis and allows an assessment of their durations.
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International Journal of Plant Sciences @ijpsjournal.bsky.social · 06/05/2026
In the May 2026 @ijpsjournal.bsky.social Ploidy does not affect responses to increased soil nutrients and salinity in a perennial geophyte Masingitla P. Mtileni, Kenneth C. Oberlander, Kelsey L. Glennon www.journals.uchicago.edu/doi/10.1086/... #PlantScience
journals.uchicago.edu
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Dorota Paczesniak @dorotdesigns.bsky.social · 23/04/2026
Such an ingenious, informative and fun figure! From a new review on the origins of allopolyploids, where the origins are conceptualized as alternative routes through a maze, comprising a sequence of events🧪
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Laura Lagomarsino, PhD @tropicalbotany.bsky.social · 22/04/2026
I'll be speaking at the International Conference of the German Society for Plant Sciences this September. Join us! Registration ends on April 30. botanik-tagung.de
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Robin Burns @robinburns.bsky.social · 14/04/2026
A short review from us on the easiest way to make an allopolyploid. It was a lot of fun writing with these two. We hope you will enjoy the Pac-Man inspired allopolyploidy maze!
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Polina Novikova @pnovik.bsky.social · 04/03/2026
I am happy to announce the launch of a new Arabidopsis genomics resource! Check out arabidopsislyrata.org Now you can easily look at the natural genetic variation across the entire species range of A. lyrata and A. arenosa.
arabidopsislyrata.org
Home | Alyrata Resource
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alison scott @alisondawnscott.bsky.social · 15/04/2026
always a pleasure to work with @robinburns.bsky.social and @pnovik.bsky.social, and this is no exception
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