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Eckart Stolle

@eckartstolle.bsky.social
293 followers 147 following 1 posts

Comparative Genomics (Insects) lab @ LIB Museum Koenig, Bonn Pollinator evolution and biodiversity. Social insects. Phenotypic evolution and phenotypic loss. Comparative and population genomics. Entomology

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Reposted by Eckart Stolle
Genome Biology and Evolution @genomebiolevol.bsky.social · 09/01/2026
Möllmann, @eckartstolle.bsky.social et al. report the first genome assembly for the European orchard bee and investigate its epigenomic architecture to find evidence for the limited role of methylation in gene regulation in Hymenopterans. 🔗 doi.org/10.1093/gbe/evaf224 #genome #evolution
GBE | A Chromosome-Level Genome Assembly and Resequencing Data Reveal Low DNA Methylation and Reduced Diversity in the Solitary Bee Pollinator Osmia cornuta
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SPP 2349 Gevol @gevol.bsky.social · 05/09/2025
Many thanks to all GEvol members for a truly wonderful annual meeting. It was really great to catch up with you all again.
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Rob Waterhouse @rmwaterhouse.bsky.social · 06/09/2025
Molecular evolution of dietary shifts in ladybirds 🐞 expansions of digestive & detoxifying #gene families in the herbivorous ladybirds, & absence of most plant cell wall-degrading enzymes in the ladybirds from the transition to carnivory link.springer.com/article/10.1...
link.springer.com
Molecular evolution of dietary shifts in ladybird beetles (Coleoptera: Coccinellidae): from fungivory to carnivory and herbivory - BMC Biology
Background Dietary shifts are major evolutionary steps that shape ecological niches and biodiversity. The beetle family Coccinellidae, commonly known as ladybirds, first transitioned from a fungivorou...
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Dr. Mathilde Cordellier @mcordellier.bsky.social · 29/06/2025
Two professorships in my institute at Uni Rostock! Marine Ecology www.nature.com/naturecareer...
nature.com
W3-Professorship in Marine Ecology - Rostock, Mecklenburg-Vorpommern (DE) job with Universität Rostock | 12840849
The Faculty of Mathematics and Natural Sciences at the University of Rostock invites applications for a W3-Professorship in Marine Ecology at the I...
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Katharina Hoff @katharinahoff.bsky.social · 03/07/2025
Are you interested in doing your PhD in applied bioinformatics in Greifswald? Then apply now for this exciting open position! #CONCENTRATE #TRR420 #AI #DeepLearning #Bioinformatics www.uni-greifswald.de/en/universit...
uni-greifswald.de
Research Assistant - Institute of Mathematics and Computer Science 25/Sa17
Stellenausschreibung Bioinformatik
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Dr. Mathilde Cordellier @mcordellier.bsky.social · 10/07/2025
Job alert! I am looking for someone who would like to join my lab as a senior researcher, permanent, with teaching included. My lab is new, I still have startup money, just sayin. DM or email me with questions. Deadline Aug. 11th, interviews in september. Ad here: jobs.uni-rostock.de/jobposting/c...
jobs.uni-rostock.de
Research Assistant (m/f/d) - Population Genomics/Evolutionary Genomics
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bioRxiv Genomics @biorxiv-genomic.bsky.social · 18/07/2025
A chromosome-level genome assembly and resequencing data reveal low DNA methylation and reduced diversity in the solitary bee pollinator Osmia cornuta www.biorxiv.org/content/10.1101/202…
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bioRxiv Genomics @biorxiv-genomic.bsky.social · 18/07/2025
Direct detection of meiotic recombination events in the highly heterozygous amphioxus genome www.biorxiv.org/content/10.1101/202…
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bioRxiv Genomics @biorxiv-genomic.bsky.social · 18/07/2025
Programmed DNA elimination drives rapid genomic innovation in two thirds of all bird species www.biorxiv.org/content/10.1101/202…
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Molecular Biology and Evolution @molbioevol.bsky.social · 24/06/2025
@anaevolcatalan.bsky.social @hoehna.bsky.social @stusso.bsky.social @ulrikacandolin.bsky.social et al. analyse genomes of the European firefly, revealing a complex demographic history shaped by glaciation and sex-biased dispersal. 🔗 academic.oup.com/mbe/article/42/6/msaf123/8170119 #evobio #molbio
academic.oup.com
Sex-biased Migration and Demographic History of the Big European Firefly Lampyris noctiluca
Abstract. Differential dispersion between the sexes can impact the colonization process and demographic history of a species. Here, we explored the demogra
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Rob Waterhouse @rmwaterhouse.bsky.social · 13/07/2025
🕷️🕸️🧬 whole #genome sequencing of 202 parent-offspring trios from 34 families across 3 social & 4 subsocial species - sociality is associated with an approximately 50% reduction in germline mutation rate www.biorxiv.org/content/10.1... #biodiversity #genomics
biorxiv.org
Convergent Evolution of Sociality Causes Reduction of Mutation Rates in Spiders
Germline mutations play a crucial role in determining the rate of molecular evolution. In the spider genus Stegodyphus, sociality has independently evolved three times within the past million years, e...
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Shujun Ou @sigmafacto.bsky.social · 10/04/2025
Hello bluesky world! Newbee here! I have a postdoc position immediately available in my lab. It will focus on identifying high-quality transposons in many genomes and finding their impacts in evolution and traits. Most works, including EDTA2 development and annotation of 400+ genomes, are done! 1/n
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The Guardian @theguardian.com · 02/04/2025
Study finds strongest evidence yet that shingles vaccine helps cut dementia risk
theguardian.com
Study finds strongest evidence yet that shingles vaccine helps cut dementia risk
Older adults in Wales who had the jab were 20% less likely to be diagnosed with dementia that those not vaccinated Researchers who tracked cases of dementia in Welsh adults have uncovered the strongest evidence yet that the shingles vaccination reduces the risk of developing the devastating brain disease. Health records of more than 280,000 older adults revealed that those who received a largely discontinued shingles vaccine called Zostavax were 20% less likely to be diagnosed with dementia over the next seven years than those who went without. Continue reading...
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Javier Santoyo @jsantoyo.bsky.social · 10/02/2025
tidk: a toolkit to rapidly identify telomeric repeats from genomic datasets. #TelomericRepeats #AssembledGenomces #LongReads #Bioinformatics 🧬 🖥️ academic.oup.com/bioinformati...
academic.oup.com
tidk: a toolkit to rapidly identify telomeric repeats from genomic datasets
AbstractSummary. tidk (short for telomere identification toolkit), uses a simple, fast algorithm to scan long DNA reads for the presence of short tandemly
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Dr Mark D. Scherz @markscherz.bsky.social · 10/02/2025
✨We are hiring!✨🧪🏛️🧬 The @nhmdk.bsky.social at the University of Copenhagen is seeking a permanent, full-time Molecular Biology Lab Manager to help us establish and run our National Facility for #Museomics in the heart of one of Europe's most beautiful cities! Please reskeet!
candidate.hr-manager.net
Full-time Molecular Biology Lab Manager at Natural History Museum Denmark
Natural History Museum Denmark, Faculty of Science, the University of Copenhagen is looking for a full-time Molecular Biology Lab Manager, to start 1st June 202
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Greifswald Mire Centre @greifswaldmoor.bsky.social · 03/02/2025
🌱 Job-Alarm: Wissenschaftskommunikation & Moorökologie! 🌿📢 Die Uni Greifswald sucht eine*n wissenschaftliche*n Mitarbeiter*in (50%, E13 TV-L) für WETSCAPES2.0! 🌍 📅 Deadline: 17.02.2025 - www.uni-greifswald.de/wetscapes2
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Stephen Turner @stephenturner.us · 31/01/2025
CASTER: Direct species tree inference from whole-genome alignments www.science.org/doi/10.1126/science… 🧬🖥️🧪 github.com/chaoszhang/ASTER
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Marc Johnson (he/him) @evoecolab.bsky.social · 31/01/2025
Important new paper just out on the origins & #evolbiol of the London Underground Mosquito Culex p. molestus by @yukihaba.bsky.social @lindymcbr.bsky.social. Spoiler alert: Molestus originated 1000s of years ago in the Middle East www.biorxiv.org/content/bior... #evolviol #urbanevolution
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Jeffrey Ross-Ibarra @jrossibarra.bsky.social · 12/11/2024
I still love this figure. Submitting revisions this week. SNPs in transcription factor binding sites (green) explain the majority of additive genetic variation for >70% of ~150 phenotypes (rows) in maize. See Alt for detailed figure legend. See www.biorxiv.org/content/10.1... for more!
Estimated additive genetic variance organized by 143 traits. Colored ridges show the estimated additive genetic variance across 100 permutations for either MOA bQTL (green), bgSNPs (orange), and remaining genome SNPs (purple). Black symbols represent the mean estimated value across permutations. Traits arranged by bQTL mean variance estimates and color coded according to general trait groupings: vitamin E metabolites = navy blue, metabolites = purple, stalk strength = light blue, flowering time = gold, plant architecture = red, disease = green, tassel architecture = pink, ear architecture = orange, misc. = grey.
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Gina Baucom @gbaucom.bsky.social · 30/01/2025
Hey look! A Society for the Study of Evolution starter pack! Includes ESEB, ASN, and journals! Pls Re-skeet!
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BM vReumont @reumont.bsky.social · 28/01/2025
Interested in interactions between managed #honeybee & #wild #bees using #eDNA methods in a multidisciplinary consortium #Beenergia? Then apply for a postdoc in the Natural History Museum here in #Karlsruhe for environmental DNA (eDNA) research on bees! summ summ... www.smnk.de/museum/aussc...
smnk.de
Beenergia Postdoc (m/w/d)
Staatliches Museum für Naturkunde Karlsruhe
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Stephen Turner @stephenturner.us · 30/01/2025
JBrowse v3.0.0
jbrowse.org
v3.0.0 Release | JBrowse
Hello all!
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PlantEvolution 🌱🌾 @plantevolution.bsky.social · 25/01/2025
Check out this impressive potato genome (graph) study, with @zbao.bsky.social as co-first author! I especially liked the authors' idea of a 'broken window' effect of deleterious SVs, which seem to attract more deleterious mutations (SVs and SNPs) nearby. #plantscience www.nature.com/articles/s41...
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Stephen Turner @stephenturner.us · 25/01/2025
Targeted decontamination of sequencing data with CLEAN www.biorxiv.org/content/10.1101/202… 🧬🖥️🧪 Nextflow: github.com/rki-mf1/clean
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Rudolf Meier @rudolf-meier.bsky.social · 21/01/2025
Episode 3 (imaging): Don't just sort. Also image! No money for a robot? Try the Entomoscope! 🦟🔬 DIY microscope for imaging tiny insects in ethanol: 3D-print case, order parts, assemble, image! 📸Perfect for entomologists www.youtube.com/watch?v=VEoZ... ieeexplore.ieee.org/document/104...
youtube.com
DIY Photomicroscope
YouTube video by Integrative Biodiversity Discovery
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phy_papers @phypapers.bsky.social · 15/01/2025
From trees to traits: A review of advances in PhyloG2P methods and future directions arxiv.org/abs/2501.07043v1
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Stephen Turner @stephenturner.us · 15/01/2025
Google Docs pro tip: Tools --> Preferences --> check Enable Markdown. You can write **markdown** inline with `code` chunks etc and it'll format automatically. Bonus, copy to markdown and paste from markdown.
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Johann Confais @johannconfais.bsky.social · 13/01/2025
Great tall from @clementgoubert.bsky.social to present GraffiTE: a pipline that finds polymorphic TE in genomes #PAG32 github.com/cgroza/Graff...
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Johann Confais @johannconfais.bsky.social · 13/01/2025
REPET got a complete overhaul in version 4.0 ! Etienne Bardet from @urgi-inrae.bsky.social presents the updates in #PAG32 forgemia.inra.fr/urgi-anagen/...
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Ewan Birney @ewanbirney.bsky.social · 14/01/2025
This is an important shift - the long awaited new Ensembl web site is ready for beta testing - is smooth, scrollable genome loveliness +clean views of the complex information - but @ensembl.bsky.social needs your help to get all the use cases out. Come to the webinar, and check out beta.ensembl.org
beta.ensembl.org
Ensembl
The new website of the Ensembl project
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JD Campbell, PhD @campbell-jd-phd.bsky.social · 13/01/2025
#PAG32 | #PAG2025 Dr. Lee Search pedigree of blueberries to add to the pan-genomes that would help the breeding program. PanKmer software: academic.oup.com/bioinformati...
academic.oup.com
PanKmer: k-mer-based and reference-free pangenome analysis
AbstractSummary. Pangenomes are replacing single reference genomes as the definitive representation of DNA sequence within a species or clade. Pangenome an
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Damien Gergonne @damsgergonne.bsky.social · 07/01/2025
🤩Excited to share my latest article, last one of my thesis, in an @entsocamerica.bsky.social journal! We explored soil-feeding Embiratermes termites' evolution using genetic data and propose a biogeographic scenario. 🌎🧬 📄 doi.org/10.1093/isd/... Thanks to all collaborators! #Phylogeography
doi.org
Evolutionary history of soil-feeding Neotropical termites reveals recent divergences linked to geologic-climatic influences
Abstract. The Neotropics harbor a diverse array of flora and fauna shaped by a complex geological and climatic history. It includes marine invasions, pulse
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Julia Osterman @juliaosterman.bsky.social · 13/01/2025
New paper out! 🎉 We synthesise the mechanisms oh how crop diversification can benefit pollinators with a focus in Western Europe and North America. @eeraertsmaxime.bsky.social @catrinwestphal.bsky.social Led by @ThijsFijen link.springer.com/article/10.1...
link.springer.com
Crop diversification for pollinator conservation - Landscape Ecology
Context Intensive agriculture drives insect decline impacting insect-mediated ecosystem services that support production. Crop diversification shows promise in increasing crop productivity and enhanci...
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Matthew Hahn @3rdreviewer.bsky.social · 13/01/2025
Very cool paper by @johnstinchcombe.bsky.social, which I had completely missed!
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Matthias H. Weissensteiner @mweissensteiner.bsky.social · 07/01/2025
Please spread! The newly established CF Genomics at UOL is re-advertising a position for a bioinformatician uol.de/en/job/bioin...
uol.de
Bioinformatician/Computational Biologist // University of Oldenburg
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Yi-Jyun Luo @yjluo.bsky.social · 07/01/2025
To support genome structure studies in non-model systems, we developed SyntenyFinder, a synteny analysis pipeline combining OrthoFinder and RIdeogram. Learn more on our GitHub: github.com/symgenoevola...
github.com
GitHub - symgenoevolab/SyntenyFinder: SyntenyFinder contains a collection of scripts to easily perform and visualize macrosynteny analysis when provided with the accessions of annotated chromosome-lev...
SyntenyFinder contains a collection of scripts to easily perform and visualize macrosynteny analysis when provided with the accessions of annotated chromosome-level genome assemblies from NCBI. - s...
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Ian Henderson @hendersi.bsky.social · 06/01/2025
Natural variation modifies centromere proximal meiotic crossover frequency and segregation distortion in Arabidopsis thaliana biorxiv.org/content/10.1... new work from us on centromere inheritance and organisation @matt-naish.bsky.social @plantevolution.bsky.social @genomeevolution.bsky.social
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Jessi Rick @jessi-rick.bsky.social · 29/12/2024
🚨 New paper! 🚨 Population Genomics of Adaptive Radiation: doi.org/10.1111/mec.... This was such a fun review paper to work on over the last four years with @cewagnerlab.bsky.social and my UW lab mates, keeping us working together during Covid times and as we have (mostly) all moved on to new places
doi.org
Population Genomics of Adaptive Radiation
Adaptive radiations are rich laboratories for exploring, testing, and understanding key theories in evolution and ecology because they offer spectacular displays of speciation and ecological adaptati....
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Ryan Wick @rrwick.bsky.social · 17/12/2024
New release of Canu - first one in over 3 years! github.com/marbl/canu/r... The notes say this will be the very last release. Many thanks to its devs Brian Walenz and @sergek.bsky.social. Canu may be a bit old and it's certainly not fast, but it makes good assemblies and so I still use it!
github.com
Release Canu v2.3 · marbl/canu
These are release notes for Canu version 2.3, which was released on December 17th, 2024. Canu is specialized for assembly of single-molecule sequences. Full documentation can be found at http://can...
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Eleanor Scerri @elliescerri.bsky.social · 14/12/2024
A little bomb. They're not saying hybridization didn't happen, they're arguing that it hasn't been conclusively shown, as the same patterns can be produced in other ways without Neanderthal admixture. An interesting read. Thoughts? www.nature.com/articles/s41...
nature.com
Ignoring population structure in hominin evolutionary models can lead to the inference of spurious admixture events - Nature Ecology & Evolution
Simulating a metapopulation of human evolution without Neanderthal introgression into Homo sapiens still identifies Neanderthal fragments in simulated genomes, and an admixture event that never took p...
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Alexander Kopatz @go70north.bsky.social · 14/12/2024
Dealing With the Complexity of Effective Population Size in Conservation Practice -- Summary of our workshop on 🧬 #Ne for practical 🌱🌳🦟🍄🐟🐦🐘 #conservation. incl. bsky.app/profile/jmer..., bsky.app/profile/robe..., bsky.app/profile/lper... onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
Dealing With the Complexity of Effective Population Size in Conservation Practice
Effective population size (Ne) is one of the most important parameters in evolutionary biology, as it is linked to the long-term survival capability of species. Therefore, Ne greatly interests conser....
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iBartomeus @ibartomeus.bsky.social · 11/12/2024
[new paper] You probably suspected that loss of pollinator diversity consistently reduces reproductive success for wild and cultivated plants, but here we quantify it: www.nature.com/articles/s41...
nature.com
Loss of pollinator diversity consistently reduces reproductive success for wild and cultivated plants
Nature Ecology & Evolution - A meta-analysis finds that decreasing diversity of pollinator species has a negative affect on multiple measures of plant reproductive success, with wild plant...
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Stephen Turner @stephenturner.us · 13/12/2024
OrthoHMM: Improved Inference of Ortholog Groups using Hidden Markov Models www.biorxiv.org/content/10.1101/202… 🧬🖥️🧪 github.com/JLSteenwyk/orthohmm from @jlsteenwyk.bsky.social et al
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Christoph Bleidorn @cblei.bsky.social · 05/12/2024
Males of the solitary bee Anthophora plumipes have longer tongue, larger ocelli, and higher fluctuating asymmetry in more urbanised habitats www.tandfonline.com/doi/full/10....
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Judith Mank @judithmank.bsky.social · 28/11/2024
Recent studies have revealed unexpected Y chromosome diversity and suggest that the Y may play a big role in evolution. @vdbijl.bsky.social and I wrote this perspective for @evolletters.bsky.social with a few suggestions and requests. academic.oup.com/evlett/advan... Figs by www.jacelyndesigns.com
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Noah Reid @noahreid.bsky.social · 26/11/2024
I am stoked to read this paper. I worked as a field tech on this study system after undergrad. I got to go up the Rio Changuinola before it was dammed. It was an awesome experience. www.science.org/doi/10.1126/...
science.org
Sequential introgression of a carotenoid processing gene underlies sexual ornament diversity in a genus of manakins
Integrative analyses reveal sequential instances of interspecies gene flow at a key gene controlling plumage coloration in birds.
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Hugo Darras @hugodarras.bsky.social · 26/11/2024
Great to see this published! 🐜
onlinelibrary.wiley.com
From Egg to Adult: A Developmental Table of the Ant Monomorium pharaonis
Ants are an emerging model for eco–evo–devo studies. Here, we present the first complete developmental table––from embryo to metamorphosis––for the ant Monomorium pharaonis. While doing so, we discov...
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Matthew Clark @matthew-batisio.bsky.social · 25/11/2024
I am excited to share this animation of the budding yeast inner kinetochore. Created for David Barford's lab @mrclmb.bsky.social This DNA-binding protein complex acts as an anchor for the spindles that pull chromosomes apart during mitosis. www.science.org/doi/10.1126/... #blender #animation #b3d
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Li Zhao @lizhao.bsky.social · 26/11/2024
Nicolas Svetec, David Begun, and I wrote a review article about de novo genes. If you are interested in this topic please take a look at this final open-access version at AnnualReviews www.annualreviews.org/content/jour...
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