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Noah Reid

@noahreid.bsky.social
1.7K followers 1.2K following 637 posts

Computational Biology Core at the University of Connecticut. Genomics, bioinformatics, evolution. Also nature, natural history. A little too into birding. scholar.google.com/citations?user=I…

PostsRepliesMedia
Reposted by Noah Reid
grovehaunter @grovewalker.bsky.social · 29/09/2026
photo of werner herzog with a speech bubble added so that it looks like he is saying the quoted post
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Noah Reid @noahreid.bsky.social · 30/09/2026
This story presents a couple dealing with familial adenomatous polyposis as a compelling case for legalizing embryonic gene editing. I'm not an expert, but shouldn't mendelian diseases be more easily dealt with by preimplantation genetic testing? Isn't gene editing increased risk for no gain?
npr.org
This startup wants to prove gene-editing embryos is safe for making healthy babies
Origin Genomics aims to prove that the potential benefits of its technology for editing disease-causing genes in human embryos outweigh the risks.
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Cellular Tracking Technologies @celltracktech.bsky.social · 28/09/2026
A Northern Waterthrush tagged in Cape May, NJ left after sunset on Sep 11. Two weeks later it was over Colombia! Jamaica -> Colombia included ~800 km of open Caribbean. 3,082 km so far! @birdscanada.bsky.social @originalstu.bsky.social #MotusWTS #BirdMigration #ornithology @nature.org
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Carl Zimmer @carlzimmer.com · 27/09/2026
Four days ago, a scientist was surprised by the news that Anthropic discovered new virus genes for making DNA. He says he’s been studying them for years—and feeding his data to Anthropic’s AI as part of his own research. Coincidence? Here’s my story. nyti.ms/3VSWayc
nyti.ms
Did Anthropic’s A.I. Really Make a Scientific Discovery on Its Own? (Gift Article)
An expert at the University of Copenhagen said his team had been sharing its research with the company’s A.I. model, Claude, and that its new finding matched their work.
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Wei Shen 沈 伟 @shenwei356.bsky.social · 24/09/2026
SeqKit is now faster and uses 40% less memory when reading large FASTA records, such as human genomes, though it still uses more RAM than tools written in C/C++/Rust. Worth upgrading! github.com/shenwei356/s...
github.com
GitHub - shenwei356/seqkit: A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation - shenwei356/seqkit
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Noah Reid @noahreid.bsky.social · 21/09/2026
If me and Rudy were astronauts and discovered some seemingly benign but actually hostile alien biosphere, Rudy would not be the loyal companion with a sixth sense for danger. He would be the first to get got.
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Noah Reid @noahreid.bsky.social · 19/09/2026
I like being a completely unsophisticated grillmaster. It means that sometimes food is mediocre, but it also leaves room for food to be surprisingly glorious. Like why is this red pepper so incredibly delicious? I don't know. It's a gift from heaven.
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Noah Reid @noahreid.bsky.social · 19/09/2026
This morning the first Tolland County sedge wren in over 30 years was found. Given how sneaky it was it makes you wonder how many have passed through unnoticed.
A sedge wren obscured by cattails A sedge wren obscured by cattails
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Noah Reid @noahreid.bsky.social · 17/09/2026
What. The. Fuck.
nytimes.com
Trump Administration Moves to Gut a Core Endangered Species Protection (Gift Article)
An internal memo reinterprets the law so that only the intentional killing of animals, not collateral harm, is illegal.
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Noah Reid @noahreid.bsky.social · 14/09/2026
A student who already has credentials needs to set up 2FA for our HPC. IT demands that I vouch for him. But they also need proof that I am who I say I am in the form of photographs of my university ID. This is all taking place over university e-mail.
static.klipy.com
Tucker Carlson
ALT: Tucker Carlson
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Ian Sudbery @iansudbery.bsky.social · 12/09/2026
Holy moly, @ensembl.org killed biomart! Hope many R scripts are there out there that depend on biomaRt? How many people have informatics practicals, or undergraduate project instructions that depend on a web interface for bulk selection of data?
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Wayne Maddison @waynemaddison.bsky.social · 09/09/2026
The Tree of Life web project is back! A phylogenetic view of biodiversity way ahead of its time (ca. 1995!), conceived and led by David Maddison, collaborative & human-curated, widely used in teaching. Defunct technology had doomed it until Travis, Danny, and Andrew revived it. 🥳🎉 🧪 #evolbiol
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Noah Reid @noahreid.bsky.social · 03/09/2026
[cries in oil fired boiler]
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Reposted by Noah Reid
Jeffrey Ross-Ibarra @jrossibarra.bsky.social · 26/08/2026
For folks interested I just posted my keynote on ARGs from #PEQG26 on youtube (with permission). Thanks again to @genetics-gsa.bsky.social and organizers for what was a wonderful conference (except for the 24hrs prior to my talk when I was too nervous to sleep or think straight) youtu.be/ntJOdZd0mwc
youtu.be
PEQG Keynote 2026
YouTube video by Jeffrey Ross-Ibarra
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Reposted by Noah Reid
Dan Garisto @dangaristo.bsky.social · 20/08/2026
Scoop: For nearly a year, NSF has struggled to make new grants. Now we know that it will not catch up. In fact, NSF will award just 6,100 new grants—a 30% y/o/y decline, itself down from a previous avg. of 11,000+. In fact, the last time NSF awarded so few grants was in the early '80s.
nature.com
Exclusive: NSF set to issue lowest number of new grants in four decades
The US science-funding agency is withholding $1 billion of its budget so that the money can go to a special White House project.
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Noah Reid @noahreid.bsky.social · 20/08/2026
me, a big brain PhD with years of research experience and a number of highly cited publications teaching bioinformatics:
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Colin Carlson @colincarlson.bsky.social · 10/08/2026
I wrote about a reason not to use generative AI in your writing that I haven't seen anyone talking about. Once I realized this, banning GenAI in our lab's writing became a no-brainer. Feel free to share, I think this is probably useful especially for trainees: www.carlsonlab.bio/thoughts/the...
carlsonlab.bio
The only reason you’ll ever need not to write with AI — The Carlson Lab
Over the last year, our lab has been developing a policy on AI use. To do this, we did three main things: We read a lot of academic publications and tech news. We set up an #ai channel on our la...
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Noah Reid @noahreid.bsky.social · 07/08/2026
This looks pretty cool! www.science.org/doi/10.1126/...
science.org
Adaptation across an extreme elevational gradient in Andean leaf-eared mice, the world’s highest-dwelling mammal
Andean leaf-eared mice (Phyllotis vaccarum) live at the highest elevations of any mammal, and they also have the broadest elevational range, from sea level to mountain summits of >6700 meters. Highlan...
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Noah Reid @noahreid.bsky.social · 05/08/2026
Is there an explainer out there about this? How can you "dismiss charges" against people who have already been convicted? Why is any judge bound to do it? What an insane travesty. www.nytimes.com/2026/08/04/u...
nytimes.com
Judge Pained as He Grants Dismissal of Jan. 6 Charges Against Oath Keepers
The judge, Amit P. Mehta, blasted the administration’s request for a dismissal in the case, saying it bestowed “unearned grace” on the Oath Keepers defendants “by wiping their records clean.”
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Noah Reid @noahreid.bsky.social · 18/07/2026
Cellar spiders prove the theory of spontaneous generation.
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Noah Reid @noahreid.bsky.social · 17/07/2026
Counterpoint: chatgpt is at least an average search engine.
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keholsinger.bsky.social @keholsinger.bsky.social · 17/07/2026
White House Faces Stiff Pushback on Subjecting Grants to Political Review
nytimes.com
White House Faces Stiff Pushback on Subjecting Grants to Political Review (Gift Article)
Academics, city leaders and congressional lawmakers number among the thousands to urge the Trump administration to reconsider a plan to assert more control over grants.
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Chris Steller @chrissteller.bsky.social · 16/07/2026
Someone just sent me this photo from Chicago, unbelieveable
Album cover photo of the Marina apartments in Chicago for Wilco's Yankee Hotel Foxtrot CD
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Mark Abraham @markabraham.bsky.social · 16/07/2026
10 months ago
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Reposted by Noah Reid
UConn Computational Biology Core @cbcuconn.bsky.social · 11/07/2026
Join us July 28–30 for a Virtual ChIP-Seq / ATAC-Seq Workshop! 🧬 📅 10 AM – 2 PM EST 💻 Live on MS Teams + recordings 💰 $600 ($500 UConn affiliates) Register: bioinformatics.uconn.edu/cbc-workshops/ #ChIPSeq #ATACSeq #Bioinformatics #Workshop
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Noah Reid @noahreid.bsky.social · 12/07/2026
Casual soccer watcher... I have no idea why that just happened. Couldn't follow the announcers. Anyone want to help me out?
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Dr. Arun Sethuraman @arunsethuraman.bsky.social · 11/07/2026
Hey team - it’s looking very likely that I’ll be hiring not one but two four year postdocs! We’re a fun lab with tons of theoretical and applied pop gen projects - broadly in polyploid, conservation, and human evo. Competitive salary, sunny San Diego! Do share with your about to defend grads!
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Noah Reid @noahreid.bsky.social · 06/07/2026
I submitted my comment about the OMB rule impacting federal funding today.
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Reposted by Noah Reid
Andrew Carroll @acarroll.bsky.social · 01/07/2026
How good is MiniBWA, the successor to BWA? To test it, I ran MiniBWA on sequencing from 76 different species, comparing mapping speed, rate and accuracy with BWA MEM. In short, it's really good. If you map short reads, it's well worth your time. andrewcarroll.github.io/2026/06/30/t...
andrewcarroll.github.io
The Best of Both Worlds - Assessing MiniBWA
Recently, Heng Li released MiniBWA (GitHub) alongside a paper by Heng Li and Nils Homer describing the method (paper). MiniBWA builds on the approaches in Minimap2 (also by Heng Li), but falls back on...
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Noah Reid @noahreid.bsky.social · 26/06/2026
It is so weird that people like the term "upshot", as in "result of an event". It is so close to "upside", as in "the good part of the result of an event". To my ear you sound like a psychopath when you say "the upshot of this policy is that 25,000 people will die preventable deaths".
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Rob Denton @rddenton.bsky.social · 21/06/2026
Bummed to miss #Evol2026. For all those students looking for a position, we're recruiting MS students (polyploid genomics) and a PostDoc (conservation genomics) for next year. Shoot me an email!
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Jeremy Yoder says no war @jbyoder.org · 22/06/2026
Sam Scheiner accepts his @sse-evolution.bsky.social Lifetime Achievement Award by pulling up a slide packed with names of colleagues from his 26 years at NSF, and reminding us to thank federal agency staff and scientists who are still working to support research while going "through hell" #Evol2026
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Phil Ewels @ewels.bsky.social · 22/06/2026
I'm very happy to say that we now have new tools for viewing @nextflow.io log files for both the #CLI and the #VSCode extension! Try it out with the latest Nextflow edge release (26.05.0-edge) after a run: $ nextflow logfile Or open any log file in VSCode with the Nextflow extension installed ✨🌈
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Noah Reid @noahreid.bsky.social · 17/06/2026
I installed the posit assistant in RStudio out of curiosity and in the last 20 minutes it has been just awful. I haven't tried to use it for anything substantive, but it's making all these code/text predictions that are not helpful AT ALL.
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Noah Reid @noahreid.bsky.social · 15/06/2026
Are you worried that the AI tutoring you is feeding you nonsense? Do you suspect its praise of your brilliant questions is... insincere? Allay your fears by learning how to analyze single-cell data from an actual human at our live-taught virtual workshop coming up next week!
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Noah Reid @noahreid.bsky.social · 14/06/2026
Kind of staggering to watch another major forest tree species get erased in Connecticut (ashes first and now beeches).
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Noah Reid @noahreid.bsky.social · 13/06/2026
🐪 Animal #1048 🐀 I figured it out in 4 guesses! 🟧🟩🟩🟩 🔥 1 | Avg. Guesses: 4 metazooa.com #metazooa
metazooa.com
Metazooa
Become an evolutionary detective to find the Mystery Animal!
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Markus Eichhorn @markuseichhorn.bsky.social · 11/06/2026
Bob Ricklefs RIP. One of the giants of ecology. His textbooks were the gateway to the field for many students. His papers were invariably thoughtful, well-argued and provocative, even those I disagreed with. 🌏🧪🌐
dynamicecology.wordpress.com
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Noah Reid @noahreid.bsky.social · 09/06/2026
Which scientific field would be least comprehensible to a time-traveling scientist from, say, the 1950s? I feel like it's gotta be statistics.
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Noah Reid @noahreid.bsky.social · 05/06/2026
40 minutes late with an ebird checklist. www.youtube.com/watch?v=jO2j...
youtube.com
Weekend Update: Jane Wickline on Being Chronically Late - SNL
YouTube video by Saturday Night Live
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Reposted by Noah Reid
Karen R. Lips @karenrlips.bsky.social · 05/06/2026
Unexpected expansion and regrowth in Earth’s mangrove forests over the past four decades www.science.org/doi/10.1126/...
science.org
Unexpected expansion and regrowth in Earth’s mangrove forests over the past four decades
Global mangrove forests have disappeared rapidly because of deforestation but have also regrown through natural regeneration and restoration. Yet their long-term trends in extent and canopy cover rema...
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lifescitrainers.bsky.social @lifescitrainers.bsky.social · 04/06/2026
Are you a life scientist? Do you deliver or enroll in short-course professional development. Join our community especially for tomorrow's community call (11AM U.S. Eastern/16:00 UTC) for a panel discussion exploring AI for professional learners: lifescitrainers.org/2026/05/25/a...
lifescitrainers.org
AI and Short-Format Professional Development — What We Know and Don’t Know About Learners Outside the Classroom
This community call will explore how artificial intelligence is reshaping short-format training and professional development in the life sciences.
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Noah Reid @noahreid.bsky.social · 03/06/2026
1. Big data analysis. 2. Oops. Major sample mix up. 3. Figure out what happened. 4. Fix it. 5. Re-do big data analysis. 6. Somehow not fixed. 7. ☠️
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Noah Reid @noahreid.bsky.social · 03/06/2026
What happened in the late 80s??
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Carl Zimmer @carlzimmer.com · 01/06/2026
Trump administration shuts down deep-sea instruments that monitored climate change for a decade. “By dismantling such a system, we push the United States back yet again into a rear seat in global scientific leadership,” said a former official. Story by @eniiler.bsky.social Gift link: nyti.ms/4voqmxP
nyti.ms
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Noah Reid @noahreid.bsky.social · 31/05/2026
Boston Hollow is a very underrated CT hiking area. I just did 5 miles on the Nipmuck trail/Boston Hollow Rd through incredibly beautiful forest. It's packed with mountain laurel covered in flower buds (maybe a week or two from full bloom?) and heard/saw 14 warbler species. Only saw one other hiker.
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Noah Reid @noahreid.bsky.social · 31/05/2026
I love inaturalist because you can upload a picture of something like a fisher and within three minutes a user named FISHER_FANATIC will confirm the ID.
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Jacquelyn Gill @jacquelyngill.bsky.social · 29/05/2026
🧵 Public science in the US has taken some heavy hits over the last year, but the White House OMB is proposing a series of changes that will result in a TKO for science as we know it unless we fight back. Here's what's happening, and why it matters. 1/n
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Dan Garisto @dangaristo.bsky.social · 27/05/2026
Scoop: NSF has been quietly blocking new funds and grants to four top universities: Duke, Harvard, Princeton, and Yale. Dozens of proposals from PIs at these universities—and their collaborators—have been stuck at the Office of Award Management awaiting finalization for months.
nature.com
Exclusive: NSF puts new research grants to top universities on hold
US science funder once again restricts awards to Harvard University and other research institutions.
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Noam Ross @noamross.net · 27/05/2026
The National Science Foundation is terminating and suspending grants again, and at Grant Witness we need you to help to track them! 🧪 We can only identify research being suppressed by under-the-radar suspensions directly from researchers. Please report! grant-witness.us/posts/2026-0... #NSF
grant-witness.us
New Grant Disruptions at NSF - We Need Your Help to Report! – Grant Witness
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