Vipsania - unsupervised ab initio eukaryotic gene prediction web server (pretrained models, no finetuning)

The faculty position will be tenure track with a university year appointment starting August 25, 2027 or January 1, 2028. Apply now through October 1, 2026.

The European Reference Genome Atlas (ERGA) is a pan-European initiative that aims to facilitate the generation of high-quality reference genomes for the continent’s biodiversity as part of the g...

University of California, Berkeley is hiring. Apply now!

GPN-Star, a genomic language model with a phylogeny-aware architecture for whole-genome alignment data, is shown to be a scalable and flexible tool for genetic variant effect prediction across species...

Large-scale genome initiatives are transforming biodiversity genomics, but genomes remain taxonomically sparse and difficult to compare across species. Kapli and colleagues argue that natural history ...

In collaboration with SciLifeLab, we are sponsoring 3 students in genomics, evolutionary biology, ecology, and related fields with ambitions in innovation and entrepreneurship to attend Integrating Sc...

When combining long-read RNA sequencing data from multiple samples, transcripts can be identified either before or after merging. This study shows that neither approach is universally optimal and prov...

Ecology & Evolution is a broad open access journal welcoming research in ecology, evolution, and conservation science, and providing a forum for evidence-based views.

Unsupervised Deep Gene Finding. Contribute to Gaius-Augustus/Vipsania development by creating an account on GitHub.

NewsEnd of Term: Thank You to Our Chair and Vice Chairs!As we approach the end of the current 3-year term, we want to thank our Chair Rob Waterhouse and Vice Chairs, Ann Mc Cartney and Olga Vinnere Pe...

The European Reference Genome Atlas (ERGA) is a pan-European initiative that aims to facilitate the generation of high-quality reference genomes for the continent’s biodiversity as part of the g...

Opportunities Below are the positions currently open in our lab. Open PhD position (full time) Comparative and Population Genomics of Butterflies at High Elevations. The project aims to understand …