iiinova — where your digital self keeps evolving

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Michael Alaux @michaelalaux.bsky.social · 15/09/2026

I am delighted to celebrate 15 years of the Wheat Initiative! Proud to have been involved from the start alongside Hélène Lucas, Hadi Quesneville, and many outstanding scientists from INRAE and around the world. @wheatinitiative.bsky.social @inrae-france.bsky.social @urgi-inrae.bsky.social

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Johann Confais @johannconfais.bsky.social · 07/09/2026

📢 We (@clementgoubert.bsky.social @ritarebollo.bsky.social) are happy to share our new mini-review: “Computational Tools and Lessons Learned from Annotating Transposable Elements in Insect Genomes” doi.org/10.1016/j.co... #TransposableElements #TEannotation #InsectGenomics #Bioinformatics #TEsky 🧵👇

doi.org

Redirecting

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Johann Confais @johannconfais.bsky.social · 25/06/2026

Excellent news! Open data is fundamental to moving the entire community forward!

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Mariène Wan @marienewan.bsky.social · 02/07/2026

Anne‑Françoise Adam-Blondon a présenté aujourd’hui RDMkit lors du mini‑symposium “Orchestrating data flows throughout their lifecycle” #JOBIM2026. Une belle mise en lumière des outils et bonnes pratiques pour gérer les flux de données. @urgi-inrae.bsky.social @bioinfomics.bsky.social #ELIXIREurope

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Mariène Wan @marienewan.bsky.social · 01/07/2026

Aujourd'hui à la session posters de #JOBIM2026, venez échanger avec Étienne Bardet autour de son poster #40 : "RO-Crate as a metadata source for the FAIDARE global federation"

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Unité INRAE MaIAGE @inrae-maiage.bsky.social · 30/06/2026

📣 Meet Zoé Le Roux at #JOBIM2026 poster session A! ℹ️ She’s presenting her #poster (35) on “Community detection in a plant-based fermentation knowledge graph” 🫵 Do take a look at this very interesting work! #community #knowledgegraph #fermentation

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Mariène Wan @marienewan.bsky.social · 30/06/2026

Venez rencontrer Mohamad Yassine à son poster #88 aujourd'hui et demain à #JOBIM2026 sur PASTEC, un outil incroyable pour classifier les éléments transposables 👍

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Mariène Wan @marienewan.bsky.social · 23/06/2026

Au jdev 2026 à Montpellier 🌞 belle opportunité d'apprendre et de faire de la veille de techno 💻🤓

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URGI @urgi-inrae.bsky.social · 21/02/2026

Un nouvel outil disponible à l'URGI qui vient compléter la suite logicielle #REPET pour les analyses de la dynamique des éléments transposables dans les génomes.

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Johann Confais @johannconfais.bsky.social · 18/12/2025

For those passionate about the aphid: Dysaphis plantagina, the #REPET track is now available on BIPAA JBrowse (bipaa.genouest.org/sp/dysaphis_...) with a direct link to #RepetDB for each #transposon copy! Enjoy! #TEsky

bipaa.genouest.org

JBrowse

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URGI @urgi-inrae.bsky.social · 05/12/2025

Everything you always wanted to know about TE classification ! @nico971.bsky.social and @johannconfais.bsky.social present RepetDB a TE database to support your science at GDR #MobilET meeting.

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URGI @urgi-inrae.bsky.social · 20/11/2025

Nous proposons un protocole de soumission de données aux archives EMBL-EBI. Vous pouvez visionner un webinaire à ce sujet ici www.youtube.com/watch?v=zezQ...

youtube.com

Webinaire 2025 Soumission aux archives EMBL-EBI

YouTube video by UR Genomics-Info

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URGI @urgi-inrae.bsky.social · 18/11/2025

We have made two WheatIS videos available based on feedback from experiences with LLMs. You can access here www.youtube.com/watch?v=kEHc... and here www.youtube.com/watch?v=4imk...

youtube.com

WheatIS sharing experiences on LLM part1

YouTube video by UR Genomics-Info

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URGI @urgi-inrae.bsky.social · 19/09/2025

We have made public the data from WP2 of the BreedWheat project. You can find this resources here wheat-urgi.versailles.inrae.fr/Projects/Bre... with the label WP2. You can find phenotyping data, genotyping data and association data.

wheat-urgi.versailles.inrae.fr

BreedWheat - WHEAT URGI

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Johann Confais @johannconfais.bsky.social · 10/07/2025

Vous êtes à #JOBIM2025 et vous avez manquez le poster de @marienewan.bsky.social sur la nouvelle version de #REPET ? Rassurez vous une demo est organisé aujourd'hui à midi en amphi E. Vous découvrirez toutes les évolutions mises en place pour vous faciliter l'annotation des #transposons

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URGI @urgi-inrae.bsky.social · 24/06/2025

ELIXIR has released a position paper on open biodata, more information here elixir-europe.org/news/positio... or here www.linkedin.com/posts/elixir...

elixir-europe.org

ELIXIR position paper on securing open biodata resources for European competitiveness | ELIXIR

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URGI @urgi-inrae.bsky.social · 11/04/2025

Check this interview wheatgenome.org/people/leade... on IWGSC website from our Deputy Director at URGI @michaelalaux.bsky.social. His thoughts on Wheat Genomics and bioinformatics on the last few years and for the future.

wheatgenome.org

Michael Alaux

Michael Alaux is the Deputy Director of URGI (Unit Resources Genomics-Info) at the French National Research Institute for Agriculture, Food, and Environment (IN...

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URGI @urgi-inrae.bsky.social · 21/02/2025

🚨📢 We are hiring a postdoc position at URGI in bioinformatics genomics. All details are available here urgi.versailles.inrae.fr/About-us/New...

urgi.versailles.inrae.fr

Postdoc position - URGI

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Clément Goubert @clementgoubert.bsky.social · 14/01/2025

The great @johannconfais.bsky.social on a reference-free approach (panREPET) to annotate #Transposons in #pangenomes 🧬

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URGI @urgi-inrae.bsky.social · 14/01/2025

Great presentation from @johannconfais.bsky.social at #PAG2025 #PAG32 on the first result obtained with panREPET tool a non reference centric approach

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Johann Confais @johannconfais.bsky.social · 13/01/2025

REPET got a complete overhaul in version 4.0 ! Etienne Bardet from @urgi-inrae.bsky.social presents the updates in #PAG32 forgemia.inra.fr/urgi-anagen/...

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Johann Confais @johannconfais.bsky.social · 13/01/2025

Great tall from @clementgoubert.bsky.social to present GraffiTE: a pipline that finds polymorphic TE in genomes #PAG32 github.com/cgroza/Graff...

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URGI @urgi-inrae.bsky.social · 13/01/2025

Maud Marty will be present at #PAG2025 to introduce forest tree data in FAIDARE, a plant data discovery portal. You want to discover the forest tree data generated by the french community, let her guide you through the ecosystem

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URGI @urgi-inrae.bsky.social · 13/01/2025

Vanita Haurheeram will be present at #PAG2025 to introduce URGI service to FAIR research data management. Template, guidelines, repositories, data portals tool, come see her at POSTER80

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Nicolas Francillonne @nico971.bsky.social · 12/01/2025

After @tehub.bsky.social satellite workshop at #ICTE2024 and the creation of a working group on benchmark, what about the next step ? A manual curation workshop ? Share your thougth with the TEhub

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Nicolas Francillonne @nico971.bsky.social · 12/01/2025

@johannconfais.bsky.social and @clementgoubert.bsky.social are presenting @tehub.bsky.social at #PAG2025, an amazing resource and driven community for anyone interested in transposable element

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Clément Goubert @clementgoubert.bsky.social · 10/01/2025

#PAG32 I'd bet that every genome studied at PAG has a least 1 #Transposon, if not thousands! Find us on Sunday for an exciting session on #mobileDNA!

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URGI @urgi-inrae.bsky.social · 12/01/2025

Great presentation from Michael Alaux in #BrAPI session #PAG2025, how the french community use BrAPI to share data between several tools

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Johann Confais @johannconfais.bsky.social · 11/01/2025

Amazing talk of @nico971.bsky.social from @urgi-inrae.bsky.social on RepetDB #PAG32 urgi.versailles.inra.fr/repetdb/begi...

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URGI @urgi-inrae.bsky.social · 06/01/2025

URGI will be present at PAG 2025. We will talked about pangenomics, annotation tools, Data exchange and findability using BrAPI, Data management services, Forest tree data management, check the details here urgi.versailles.inrae.fr/About-us/New...

urgi.versailles.inrae.fr

PAG 32 - URGI

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