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Yi-Jyun Luo

@yjluo.bsky.social
996 followers 943 following 36 posts

Evolutionary biologist at Academia Sinica, Taiwan. We study the evolutionary genomics of marine invertebrates and use sequencing approaches to explore their biodiversity. More at: sgel.biodiv.tw

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Reposted by Yi-Jyun Luo
Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 28/09/2026
We have a new branch in the family tree of animals: Atreyea- a previously unrecognized lineage among the closest unicell relatives of animals. Led by @konsmitsi.bsky.social & @freejakoba.bsky.social together with a fantastic team of collaborators. 🔗 papers.ssrn.com/sol3/papers.... #protistsOnSky
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Oxford Biology @biology.ox.ac.uk · 13/07/2026
🧬 Don't miss Evolution on BBC! This new five-part series is guided by academic consultant Prof Peter Holland (Oxford Biology), bringing more than 4 billion years of life's history to the screen with the help of 600+ scientists worldwide. 📺
bbcearth.com
Evolution | BBC Earth
Chris Packham uncovers the 4 billion year story behind five iconic animals, revealing how evolution shaped them in the most surprising ways.
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WGDip @wgdip.bsky.social · 25/09/2026
Congrats to #WGDip team members @tomlewin.bsky.social @dervc.bsky.social @phylogenie.bsky.social & @peterhox.bsky.social , who with their colleague @yjluo.bsky.social , provide evidence consistent with lineage-specific rediploidisation following a cryptic polyploidy event shared by all bryozoans! 🧪
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Noah Whiteman @nkwhiteman.bsky.social · 06/08/2026
I’m thrilled to share that our search for a tenure-track colleague in my *truly wonderful and collegial* Genetics, Genomics, Evolution and Development Division in the MCB Department at Berkeley @berkeleymcb.bsky.social is live! Please share this broad search widely: aprecruit.berkeley.edu/JPF05481
aprecruit.berkeley.edu
Assistant Professor -Genetics, Genomics, Evolution, and Development - Molecular and Cell Biology
University of California, Berkeley is hiring. Apply now!
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Henry Gee 亨利·纪 @endofthepier.bsky.social · 28/01/2026
A new-found Cambrian soft-bodied biota immediately after the Sinsk Event, the first mass-extinction crisis of the Phanerozoic - paper in @nature.com www.nature.com/articles/s41...
nature.com
A Cambrian soft-bodied biota after the first Phanerozoic mass extinction - Nature
The Huayuan biota exhibits extraordinary biodiversity, illuminating the impact of the Phanerozoic mass extinction around 513 million years ago and offering critical insights into the transformation of...
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Alex de Mendoza @alexdemendoza.bsky.social · 03/08/2026
Sailing in @biorxivpreprint.bsky.social ready for summer, our study on the iconic Portuguese man o' war 🪼 is out: www.biorxiv.org/content/10.6.... We use (epi)genomics to understand a critter that fascinates me since childhood. Massive team effort with @obog.bsky.social, Cummins and Neely groups. 🧵
the indo-pacific bluebottle (Physalia utriculus)
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Yi-Jyun Luo @yjluo.bsky.social · 28/07/2026
We're pleased to announce that the DBSUMI XXIX abstract submission deadline has been extended to July 31! If you're interested in developmental biology, evolution, or marine invertebrates, we'd love to see your work! More information: www.dbsumi.com/dbsumi-xxix-... #DBSUMI #DevBio #MarineBiology
dbsumi.com
DBSUMI XXIX (2026) | Dbsumi
This is the landing page for the 29th annual DBSUMI meeting, which will be held in Oct, 2026.
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Quentin Bacquelé @quentinbacquele.bsky.social · 23/07/2026
1/ The world's songbirds sing in just 8 basic sounds. And where a bird lives decides which ones it uses. My first PhD paper is out now in @science.org (www.science.org/doi/10.1126/science.aee6239) Here is what we found:
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Yi-Jyun Luo @yjluo.bsky.social · 20/07/2026
We are recruiting a postdoc to explore how corals evolved coloniality, novel cell types, and photosymbiosis using single-cell and genomic approaches. Based at Academia Sinica, Taipei. More: sgel.biodiv.tw
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Pawel Burkhardt @pawelburkhardt.bsky.social · 10/07/2026
Our News & Views article “Body-plan organizer in comb jellies hints at animal ancestry” now published in @nature.com 🎉 We discuss fascinating work revealing organizer activity in comb jellies & the evolution of animal development. rdcu.be/fsLWq @ruthstyfhals.bsky.social @msarscentre.bsky.social
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Luis Alberto Bezares Calderón @lbezarescalderon.bsky.social · 19/06/2026
I'm recruiting a postdoc and a research assistant in my lab in the south of France for an HFSP-funded project involving choanos. More info: Postdoc: bit.ly/4xxlJTX Research assistant: (EN) bit.ly/4aOwUha (FR) bit.ly/4vcy3av Please share with any potential applicant. Thx!
bit.ly
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Nature @nature.com · 18/06/2026
Embryonic ‘organizer cells’ can tell embryos of various phyla what kind of body to build go.nature.com/4vnO1ig
go.nature.com
Cell transplant across the tree of life hints at how animals emerged
Embryonic ‘organizer cells’ can tell embryos of various phyla what kind of body to build.
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Molecular Biology and Evolution @molbioevol.bsky.social · 02/04/2026
MBE is excited to launch our newest Call for Papers on the Major Transitions of Life, covering all aspects of phylogenomic research. 🔗 academic.oup.com/mbe/pages/call-for-papers-on-the-major-transitions-of-life Guest Editors: Davide Pisani Anja Spang #evobio #molbio #phylogenetics
MBE Call for Papers on the Major Transitions of Life
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Rob Waterhouse @rmwaterhouse.bsky.social · 30/04/2026
Hox #genes from 40 xenacoelomorph transcriptomes and four #genomes academic.oup.com/gbe/article/...
academic.oup.com
Patterns of Conservation and Loss of Hox Genes in Xenacoelomorph Lineage Since Divergence From Last Common Bilaterian Ancestor
Abstract. The explosion of body forms found in bilaterians is thought to be tied to the diversification of Hox transcription factors, which play a critical
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Chema Martin @chemamd.bsky.social · 19/05/2026
🚨 We discovered a new mode of Hox gene regulation in annelids! 🪱 A distal enhancer acts as a "global control region", lifting Hox genes from Polycomb repression. This is reminiscent of Hox gene control in vertebrates, but the two modes likely evolved convergently. www.biorxiv.org/content/10.6...
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bioRxiv Developmental Biology @biorxiv-devbio.bsky.social · 19/05/2026
Convergent evolution of cluster-wide Hox gene regulation in Bilateria www.biorxiv.org/content/10.64898/20…
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Gordon and Betty Moore Foundation @moorefound.bsky.social · 01/05/2026
New funding opportunity from the Symbiosis in Aquatic Systems Initiative. We’re inviting teams of two researchers to pursue ambitious, high-risk projects advancing aquatic symbiosis (marine + freshwater). Open globally. Details + how to apply:  moore.org/SymbiosisRFP #RFP #AquaticSymbiosis
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Omaya Dudin 𓂆 ¦🍉¦🦠¦🔬¦ @dudinlab.bsky.social · 10/06/2025
90% of you probably don’t need to read this. But maybe some of you are curious & 10% will feel seen. Or a little less alone. This isn’t about seeking sympathy. It’s about sharing something hard to say out loud; partly to heal, partly in case someone needs to hear it too. (1/3) tinyurl.com/DudinO
cell.com
Omaya Dudin
Interview with Omaya Dudin, who uses Ichthyosporea as models to study how and why unicellular organisms evolved multicellularity at the University of Geneva.
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Pawel Burkhardt @pawelburkhardt.bsky.social · 27/10/2025
First neurons didn’t appear overnight. We trace their roots to ancient secretory cells - showing how lifestyle & behavior shaped the evolution of first synapses.🧠🌊 #Evolution #Neuroscience Our latest in @natrevneuro.nature.com Link: rdcu.be/eMX3E @jeffcolgren.bsky.social @msarscentre.bsky.social
rdcu.be
The evolutionary origins of synaptic proteins and their changing roles in different organisms across evolution
Nature Reviews Neuroscience - Recent studies have shed further light on the evolutionary origins of chemical synapses, In this Review, Colgren and Burkhardt explore how ancient proteins were...
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Yi-Jyun Luo @yjluo.bsky.social · 28/04/2026
Pleased to share our study on brachiopod genomes and bilaterian dorsal–ventral patterning, now out in Nature Communications. doi.org/10.1038/s414... We present the first chromosome-level genome of a brachiopod and show that the core patterning mechanism is deeply conserved across bilaterians.
doi.org
Brachiopod genome unveils the evolution of BMP signalling in bilaterian body patterning - Nature Communications
A chromosome-level brachiopod genome reveals deep conservation of BMP-mediated dorsal–ventral patterning and neural inhibition, suggesting the spiralian ancestor retained the ancestral mechanism in bi...
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Manuel Irimia @mirimiam.bsky.social · 20/04/2026
Thrilled to present our comparative study on the evolution of zygotic genome activation (ZGA)!! 🥚🧬 Amazing PhD work of @campobes.bsky.social together with @fedemantica.bsky.social and many collaborators! @melisupf.bsky.social @crg.eu. Thread below 1/15 www.biorxiv.org/content/10.6...
biorxiv.org
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Caitlyn Cardetti, PhD @caitlyncardetti.bsky.social · 10/04/2026
📢 Call for papers - Symbiotic relationships 📢 #BMCBiology Guest Editors: @yjluo.bsky.social @schwarzergnoto.bsky.social Thomas Bosch Dr rer nat, Kiel University Anil Kumar PhD, Chandigarh University Michael Sinvula Lukubwe BA, MSc, University of Namibia link.springer.com/collections/...
link.springer.com
Symbiotic relationships
BMC Biology is calling for submissions to our Collection on Symbiotic relationships. Symbiotic relationships are fundamental interactions between different ...
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Thibaut Brunet @thibautbrunet.bsky.social · 28/02/2026
Final version @nature.com of our paper describing unconventional multicellular development in a choanoflagellate inhabiting an extreme environment. A ton of new data since the first @biorxivpreprint.bsky.social preprint (which we've kept updating). A brief 🧵 (carried over from the old place)
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James McInerney @jomcinerney.bsky.social · 27/02/2026
New paper out in MBE! 🧵 "Genomic Perplexity and the Evolution of Context-Dependent Function" The big idea: genes don't have fixed functions. Function emerges from context - genomic, cellular, environmental. And we can quantify this. academic.oup.com/mbe/article/...
academic.oup.com
Genomic Perplexity and the Evolution of Context-Dependent Function
Abstract. The fundamental principle that selection acts on a gene’s function often assumes implicitly that this function is fixed and intrinsic. However, e
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Isheng Jason Tsai @ishengtsai.bsky.social · 07/01/2026
Registration now open for @embo.org workshop on the evolution of biological interactions on April 24 - 27, 2026! Come join us in Taipei, Taiwan to see how interactions shaped the genomes of various organisms and meeting people from across the globe. Info: meetings.embo.org/event/26-bio...
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Yi-Jyun Luo @yjluo.bsky.social · 31/12/2025
Happy New Year! あけましておめでとうございます!新年快樂!Feliz Año Nuevo! Manigong Bagong Taon! The SymGenoEvo Lab wishes everyone a wonderful New Year!
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Current Biology @currentbiology.bsky.social · 19/12/2025
HAPPY HOLIDAYS TO ALL OF YOU!🎄✨
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Artologica aka Michele Banks @artologica.net · 12/12/2025
#ArtAdventCalendar Gel Electrophoresis in Green and Blue, watercolor, 2023 #sciart
watercolor of DNA gel
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Anna Czarkwiani @aniaczark.bsky.social · 05/12/2025
Can't believe my postdoc paper is finally out. Christmas came early this year, holy moly 🎄 Molecular basis for de novo thymus regeneration in a vertebrate, the axolotl | Science Immunology www.science.org/doi/10.1126/...
science.org
Molecular basis for de novo thymus regeneration in a vertebrate, the axolotl
The molecular, cellular, and functional restoration of the axolotl thymus after de novo regeneration is described.
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Meg Daly @megdaly.bsky.social · 23/10/2025
This is an INCREDIBLE advance in our understanding of coral diversification. 🪸🎉 Fantastic new work led by @claudiavaga.bsky.social www.nature.com/articles/s41...
nature.com
A global coral phylogeny reveals resilience and vulnerability through deep time - Nature
The most recent common ancestor of the stony coral Scleractinia dates to about 460 million years ago and was probably a solitary, heterotrophic and free-living organism.
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Alberto Perez-Posada @apposada.bsky.social · 27/11/2025
Very happy to announce that our article in multimodal single cell analyses in planaria is out in Nature Communications @natcomms.nature.com ! Thank you very much to everyone that made this work possible. I am very happy to see it out (: www.nature.com/articles/s41...
nature.com
Multimodal single cell analyses reveal gene networks of planarian stem cell differentiation - Nature Communications
Single cell transcriptomics and chromatin accessibility uncover the gene networks underlying planarian cell type differentiation, revealing insights into the combinatorial logic of planarian cell fate...
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PLOS Biology @plosbiology.org · 09/12/2025
How do animals with lifelong growth modulate cell #proliferation? @eudaldpascual.bsky.social @ktgarschall.bsky.social @prhsteinmetz.bsky.social show that starvation induces G1/G0 #CellCycle arrest in Vasa2+/Piwi1+ #SeaAnemone cells; cycle re-entry is TOR-dependent @plosbiology.org 🧪 plos.io/48J2o6P
Top:  The phylogenetic position of Nematostella and localization of Vasa2 +/Piwi1+ cells within the juvenile polyp body plan. (A) Simplified phylogenetic tree highlighting the phylogenetic position of the sea anemone Nematostella vectensis and other animal taxa relevant for this study. All animal silhouettes are licensed under CC0,1.0 Universal Public domain and taken from https://www.phylopic.org. (B–D) Schematics showing the localization of Vasa2+/Piwi1+ cells in a juvenile polyp, depicted in longitudinal (B) or cross-section (C, D). (E) Schematic representation of the multipotent, Vasa2+/Piwi1+ stem/progenitor cell population and a simplified summary of their germinal and somatic progeny. (F) Schematics of cell cycle phases, highlighting the incorporation of EdU during S-phase (black line) and the phosphorylation of Histone H3 (pH3+) during metaphase. Bottom: Confocal image of two Vasa+/Piwi+ stem-like cells in the inner epithelial folds of the sea anemone Nematostella vectensis. Immunolabelling of mOrange2-Piwi1 fusion protein (yellow) in a transgenic knock-in line combined with nuclear stain (white). Image credit: Paula Miramón-Puértolas.
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Yi-Jyun Luo @yjluo.bsky.social · 09/12/2025
Honor to join the EMBO Young Investigator Network as a Global Investigator! Very grateful to @embo.org for the support in promoting international exchanges. Excited to strengthen collaborations with colleagues across Europe and beyond. www.embo.org/press-releas...
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EMBO @embo.org · 09/12/2025
Twelve scientists from Chile, India, Nigeria, Singapore and Taiwan have been selected as new EMBO Global Investigators – Congratulations to the new cohort! 🧪 Read the press release: www.embo.org/press-releases/twelve-… #funding #training
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Nature Ecology & Evolution @natecoevo.nature.com · 09/12/2025
Our December issue is now live: www.nature.com/natecolevol/... Featuring research on 🧪 🦏 rhinocerotid dispersal in the mid-Cenozoic 🐟 biodiversity responses to freshwater stressors 🦋 evolution of butterfly eyespots Cover shows a Korean seahorse, from Meyer et al. www.nature.com/articles/s41...
Cover image for the December issue of Nature Ecology & Evolution. The image shows a male Korean seahorse and its young. The cover line reads "Role reversals"
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EMBO @embo.org · 02/12/2025
Congratulations to the new cohort of 28 EMBO Young Investigators! They are joining an international network of more than 800 life scientists – Welcome! Read the press release here: www.embo.org/press-releases/twenty-…
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Charlotte Wright @charlottewright.bsky.social · 27/11/2025
I'm very excited that our paper on Project Psyche is now published! 🦋🧬 Over the last two years we've built an incredible community & already made huge progress. Read about this & how @projectpsyche.bsky.social will drive exciting and collaborative science here: www.cell.com/trends/ecolo...
cell.com
Project Psyche: reference genomes for all Lepidoptera in Europe
Project Psyche is a transnational initiative to generate and study chromosome-level reference genomes of all ~11 000 species of Lepidoptera (butterflies and moths) found in Europe. Here, we describe t...
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EMBO @embo.org · 14/11/2025
Apply now for EMBO Workshop "Evolving together: From #genomics to biological interactions" in Taipei, Taiwan, 24–27 Apr 2026. Abstract submission/Registration deadline: 20 Jan/28 Feb 2026 meetings.embo.org/event/26-bio... #EMBOEvoGenBio #GeneSky #EvoSky #EcoSky #EMBOevents 🧪
meetings.embo.org
Evolving together: from genomics to biological interactions
Genomic and evolutionary research has transformed our understanding of how biological interactions shape life’s diversity. From symbiosis and host–pathogen relationships to competition, cooperation, …
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Alex de Mendoza @alexdemendoza.bsky.social · 18/11/2025
Out today, our take on 6-methyladenine #6mA evolution in Eukaryotes @natgenet.nature.com. We asked a simple question, is really DNA 6mA common across the eukaryotes? The answer is "yes" if you're a unicellular eukaryote 🦠, not so if you're multicellular 🐝🌱🍄. www.nature.com/articles/s41... 1/9
nature.com
Adenine DNA methylation associated with transcriptionally permissive chromatin is widespread across eukaryotes - Nature Genetics
Long-read sequencing in 18 unicellular eukaryotes reveals that 6mA is widespread across eukaryotes and is enriched at transcriptionally permissive regions, which are also marked by H3K4me3.
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Fabian Rentzsch @fabianrentzsch.bsky.social · 18/11/2025
Our paper on the role of neurons in Nematostella head regeneration is now out at @currentbiology.bsky.social Big thank you to all collaborators, it was a pleasure! Ectopic head regeneration after nervous system ablation in a sea anemone: Current Biology www.cell.com/current-biol...
cell.com
Ectopic head regeneration after nervous system ablation in a sea anemone
Via genetic ablation of neurons, Mazloumi Gavgani et al. show that the nervous system is essential for defining axial polarity during whole-body regeneration in the sea anemone Nematostella vectensis.
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Current Biology @currentbiology.bsky.social · 18/11/2025
Lophophorates get way too little publicity... Latest issue is out! www.cell.com/issue/S0960-...
On the cover: A phoronid (Phoronis australis) extending its crown-like feeding organ, the lophophore, from its tube on the seabed. These sedentary marine invertebrates belong to the spiralian branch of bilaterian animals. For over a century, their closest relatives have been debated, with competing hypotheses linking them to either brachiopods or bryozoans. In this issue, Lewin et al. present a chromosome-level genome of P. australis and reveal that it shares seven derived chromosome fusions with bryozoans. This provides rare, sequence-independent evidence supporting bryozoans as the closest relatives of phoronids and offers new insights into the evolution of genome structure and animal body plans. Photograph © Fred Bavendam; used with permission.
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Yi-Jyun Luo @yjluo.bsky.social · 17/11/2025
Glad to see our phoronid genome study featured on the cover of @currentbiology.bsky.social! It shows how genome structure can be used to test competing hypotheses of nested topology and how derived structural changes provide evidence for monophyly. www.cell.com/current-biol...
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Marta Álvarez-Presas @martaalvarez.bsky.social · 13/11/2025
Happy to share Jialin's first publication. She did a great job exploring the transition to land in animals. Co-supervised by the great Jordi Paps and me and in collaboration with Davide Pisani and @phil-donoghue.bsky.social
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Peter Mulhair @petermulhair.bsky.social · 13/11/2025
A truly refreshing perspective on an age old debate. Big implications for animal evolution but also useful techniques to address many other remaining phylogenetic questions. Congrats to you both on a wonderful piece of work!
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🧬Jacob L Steenwyk @jlsteenwyk.bsky.social · 13/11/2025
NEW pub in @science.org 🥳 Is it sponges (panels A & B) or comb jellies (C & D) that root the animal tree of life? For over 15 years, #phylogenomic studies have been divided. We provide new evidence suggesting that... 🔗: www.science.org/doi/10.1126/...
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Arnau Sebé-Pedrós @arnausebe.bsky.social · 15/10/2025
We are happy to share our latest work in @nature.com . We study the genomic and cellular basis of facultative symbiosis in Oculina patagonica - a Mediterranean coral remarkable for its ability to survive long periods without algal symbionts. Led by Shani Levy and @xgrau.bsky.social rdcu.be/eLbaZ
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Nature Ecology & Evolution @natecoevo.nature.com · 11/11/2025
Tissue-specific transcriptomics, comparative genomics and genome editing identify a taxon-specific promoter of a Hox gene that controls eyespot size plasticity and probably contributed to wing eyespot diversity in satyrid butterflies 🧪 www.nature.com/articles/s41...
nature.com
A novel Hox gene promoter fuels the evolution of adaptive phenotypic plasticity in wing eyespots of satyrid butterflies - Nature Ecology & Evolution
Many satyrid butterflies show seasonal variation in wing eyespot size in response to temperature. Tissue-specific transcriptomics, comparative genomics and genome editing identify a taxon-specific pro...
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Max Telford @maxjtelford.bsky.social · 11/11/2025
My book 'The Tree of Life' is published in the USA and Canada today. Available as book, on kindle and as audio. I would be really grateful for reposts. www.amazon.com/Tree-Life-So... www.amazon.ca/Tree-Life-So...
Cover of book titled The Tree of Life: solving science's greatest puzzle.
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Christoph Bock Lab @ CeMM & MedUni Vienna @bocklab.bsky.social · 11/11/2025
🗨️ Just published in Nature Biotechnology: Our CellWhisperer AI enables chat-based analysis of single-cell sequencing data. You can talk to your cells & figure out the biology without writing any computer code. Paper here: www.nature.com/articles/s41.... Annotated walkthrough in a thread below (1/11)
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Tom Lewin @tomlewin.bsky.social · 10/11/2025
Lophophorata is monophyletic! Super excited to see this work out in Current Biology - we sequenced a phoronid genome and used shared chromosome fusions to confirm the monophyly of Lophophorata. A big team effort from the Luo Lab @yjluo.bsky.social! More here: authors.elsevier.com/c/1m3mV3QW8S...
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