Reposted by Bowen ZhengRichard Sever @richardsever.bsky.social · 27/08/2026$3.7 billion spent on APCs in 2025. That's ~1000X more than it costs to run bioRxiv/medRxiv. Worth thinking about as we consider how to fund infrastructure... arxiv.org/pdf/2608.16322arxiv.org 813379
Reposted by Bowen ZhengYasmine El-Shamayleh @elshamayleh.bsky.social · 26/08/2026Excited to share the lab’s first publication, co-led by talented postdoc Chuyi Su @chuyisu.bsky.social We leveraged cell type-specific optogenetics in the macaque cerebral cortex to elucidate the role of excitatory and inhibitory neurons in visual form processing. www.nature.com/articles/s41...nature.comOptotagging in primate cortex uncovers excitatory and inhibitory neuron specializations in form vision - Nature CommunicationsThis study leverages cell type-specific optogenetics in the monkey cerebral cortex to elucidate the unique functional contributions of excitatory and inhibitory neurons in visual form processing. The ... 36317
Reposted by Bowen ZhengAdrian Roggenbach @a-roggenbach.bsky.social · 24/08/2026⚠️PREPRINT ALERT⚠️ How can we better understand distributed brain activity across temporal and spatial scales? In this collaborative project, we combined ultra-flexible electrodes with two-photon imaging to illuminate brain-wide neural dynamics. Link: doi.org/10.21203/rs.... 1/8 13211
Reposted by Bowen ZhengTianyuan Teng @tyteng.bsky.social · 13/08/2026You'd think people prefer the simplest explanation of an uncertain world — Occam's razor. Our data says no, across 2 modalities, 2 tasks, 8 experiments: people often perceive illusory structure that isn't there and prefer moderate complexity. Out now in Nature Comms! www.nature.com/articles/s41...nature.comHuman learning of probability distributions is biased toward moderate structural complexity - Nature CommunicationsHumans build internal models from online observations to adapt to new environments. Here, the authors show that individuals are biased towards building models with moderate structural complexity, rega... 15519
Reposted by Bowen ZhengPhilip Ball @philipcball.bsky.social · 10/08/2026"The central challenge is no longer building models that reproduce biological behavior, but building models from which causal structure can be inferred." Very sensible paper about not just throwing everything into your simulation or model. arxiv.org/abs/2608.06998arxiv.orgSimulating is not always understanding: When model complexity obscures biologyIn cell biology, computational models of biological systems range from minimal representations with a handful of parameters to whole-cell simulations tracking thousands of molecular species across a c... 911734
Reposted by Bowen ZhengStanley Heinze @stanley-heinze.bsky.social · 30/07/2026New preprint! www.biorxiv.org/content/10.6... Nearly a decade after starting the project, the first major results from our comparative connectomics work is online! Comparing the head direction circuits of the central complex in bees, ants and flies, recapitulating >300million years of evolution. 615963
Reposted by Bowen ZhengRichard Gast @rgast.bsky.social · 27/07/2026The Ott-Antonsen ansatz revolutionized our understanding of coupled oscillator systems with heterogeneous oscillators. We developed a multi-ensemble method that increases the applicability of the OA ansatz to empirical data substantially arxiv.org/abs/2607.09516, as we demonstrate on neural data.arxiv.orgA multi-ensemble mean-field reduction method for networks of globally coupled phase oscillators with arbitrary parameter distributionsUnderstanding the dynamical properties of coupled phase oscillator systems with heterogeneous oscillator frequencies has been a long-standing challenge of complex systems theory. While the seminal wor... 0194
Reposted by Bowen ZhengGrace Lindsay @neurograce.bsky.social · 26/06/2026Updated preprint and code from my lab. If you want to explore more realistic neural dynamics in models that can still perform visual tasks, check it out! www.biorxiv.org/content/10.1...biorxiv.orgModeling Dynamical Vision with Biologically Plausible Recurrent Convolutional NetworksConvolutional Neural Networks (CNNs) trained for image recognition have demonstrated remarkable conceptual similarities to the primate ventral visual pathway, but their standard feedforward architectu... 17017
Bowen Zheng @bwz-brain.bsky.social · 20/06/2026Finally putting this work out as a preprint :) Thanks to Emery Brown and @earlkmiller.bsky.social for helping conceptualize this work! Code: github.com/Bowen-Zheng-... and a tutorial notebook on the key ideas: github.com/Bowen-Zheng-... A 3-min overview below: (1/)github.comGitHub - Bowen-Zheng-99/joint-ssmt: Bayesian state-space model for joint inference of oscillatory dynamics and point-process couplingBayesian state-space model for joint inference of oscillatory dynamics and point-process coupling - Bowen-Zheng-99/joint-ssmt 14412
Reposted by Bowen ZhengLaura Rustarazo-Calvo @laura-rustarazo.bsky.social · 27/03/2025🎉 Excited to share our new work: “Adhesion-driven tissue rigidification triggers epithelial cell polarity”, now on @biorxivpreprint.bsky.social ! A huge thank you to @nicolettapetridou.bsky.social, Bernat, @crisp-c.bsky.social, Adrián, and everyone involved! 🙌 🧵⤵️ 411941
Reposted by Bowen Zhengpeterdoohan.bsky.social @peterdoohan.bsky.social · 11/06/2026How do brains plan actions towards goals? To get at this question we studied mice navigating complex mazes as goals changed on every trial 🧵 Work with @thomasakam.bsky.social @behrenstimb.bsky.social @kristorpjensen.bsky.social now on BioRxiv: www.biorxiv.org/content/10.6... 411846
Reposted by Bowen ZhengTakaki Komiyama @takakikomiyama.bsky.social · 03/06/2026Our new paper is out in Current Biology! We learn many things in parallel, and brain circuits are constantly rewiring across brain areas. It is notoriously difficult to understand which rewiring events are responsible for which type of learning. www.sciencedirect.com/science/arti...sciencedirect.comLocal plasticity underlies the reorganization of cortical circuit dynamics during motor learningDuring learning, neural circuits reorganize to encode new information and adapt behavioral responses. Ca2+/calmodulin-dependent protein kinase II (CaM… 1248
Reposted by Bowen ZhengDrew Schreiner @schreinerdrew.bsky.social · 13/05/2026Where, exactly, does learning happen in the brain? Out today in @nature.com, we identify a synaptic locus of birdsong learning and show that the circuit can be tuned to make birds learn faster - but at a cost. Read on👇 #neuroskyence 🧪 #prattle 💬 #bioacoustics Shareable link: rdcu.be/fiyrSnature.comA synaptic locus of song learning - NatureCombining a computational framework and optogenetic and chemogenetic manipulations within and downstream of the cortico-basal ganglia circuit identifies the specific cortico-basal ganglia synapse... 1528095
Reposted by Bowen ZhengEdvard I Moser @edvardmoser.bsky.social · 11/03/2026Is spatial navigation innate 🧠? Using #NeuroPixels we show that the #torus 🍩 underlying the #GridCell map exists already on day 10 in rats — before pups open eyes and ears and before they start upright walking. 🧵1:4 👇 www.biorxiv.org/content/10.6...biorxiv.org 318152
Reposted by Bowen ZhengSP Arun @sparuniisc.bsky.social · 22/04/2026Preprint alert! We've done the first ever brain recording simultaneously from IT & PMv in two monkeys interacting socially in natural setting! Dynamic tracking of social variables in simultaneous brain recordings of socially interacting monkeys www.biorxiv.org/content/10.6... 2256
Reposted by Bowen ZhengTommaso Patriarchi @tpatriarchi.bsky.social · 27/03/2026Wait… localized norepinephrine transients in the awake visual cortex?! Who would have guessed this neuromodulatory signal is that spatially precise, right where visual processing is happening. Brain state control just got a lot more local. @ruedigersarah.bsky.social www.nature.com/articles/s41... 1110934
Reposted by Bowen ZhengMarlene Cohen @marlenecohen.bsky.social · 20/03/2026New preprint: our lab’s first Alzheimer’s paper! “Loss of neuronal population organization links pathology to behavior in a model of Alzheimer's disease” www.biorxiv.org/content/10.6... 🧪🧵1/ 510829
Reposted by Bowen ZhengDavid Barner @drbarner.bsky.social · 19/02/2026Bots have made their way to Prolific experiments. Our lab has stopped online testing of adults entirely now for this reason - we want to know if what we study is real. Probably data collected 2-3 years ago are ok, but moving forward we just can't know. www.pnas.org/doi/10.1073/...pnas.orgPNASProceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans... 717098
Reposted by Bowen ZhengKevin Healy @healyke.bsky.social · 24/02/2026Our new paper is now out showing how time perception in animals is linked to their ecology. Using data from 237 species we show temporal perception is faster in species that fly and pursuit predators www.nature.com/articles/s41... 🌐nature.comPace of ecology drives the tempo of visual perception across the animal kingdomNature Ecology & Evolution - Using phylogenetic comparative methods across 237 species from disparate phyla, the authors show that species with fast-paced ecologies have higher temporal... 314060
Reposted by Bowen ZhengNicole Rust @nicolecrust.bsky.social · 04/01/2026Beautiful - recommended! Here, @sasolla.bsky.social recaps her decades-long journey from physics to neural networks (working with LeCun & Hopfield) to motor cortex, & and from industry (including Bell Labs) to academia, all driven by curiosity and awe (which flows from her voice). Inspiring! 14112
Reposted by Bowen ZhengMarcus Ghosh @marcusghosh.bsky.social · 22/12/2025Toy models, just in time for Christmas! Excited to share my first article for @thetransmitter.bsky.social #neuroskyence 04620
Reposted by Bowen ZhengAlicia Chen @aliciamchen.bsky.social · 26/11/2025Human speech is continuous, and many meaning spaces (like color) are continuous too. Yet we use discrete words like “blue” and “green” that carve these spaces into categories. In our new paper, we ask: How do people turn continuous spaces into structured, word-like systems for communication? (1/8)academic.oup.comDiscrete and systematic communication in a continuous signal-meaning spaceAbstract. Human spoken language uses a continuous stream of acoustic signals to communicate about continuous features of the world, by using discrete forms 1468
Reposted by Bowen ZhengColton Casto @coltoncasto.bsky.social · 26/11/2025What does it mean to understand language? We argue that the brain’s core language system is limited, and that *deeply* understanding language requires EXPORTING info to other brain regions. w/ @neuranna.bsky.social @evfedorenko.bsky.social @nancykanwisher.bsky.social arxiv.org/abs/2511.19757 1/n🧵👇arxiv.orgWhat does it mean to understand language?Language understanding entails not just extracting the surface-level meaning of the linguistic input, but constructing rich mental models of the situation it describes. Here we propose that because pr... 28233
Reposted by Bowen ZhengTim Vogels @tpvogels.bsky.social · 23/11/2025"Spiking Networks Hate It! Find Out the One Plasticity Trick They Don’t Want You to Know! Never stabilise models by hand again." - I woke up thinking we missed an opportunity with the title of this one. :/ www.science.org/doi/10.1126/... Also: It snowed in Vienna, 10cm white fluffies! Happy Sunday!science.orgInhibitory Plasticity Balances Excitation and Inhibition in Sensory Pathways and Memory NetworksPlasticity at inhibitory synapses maintains balanced excitatory and inhibitory synaptic inputs at cortical neurons. 0488
Reposted by Bowen ZhengBlake Richards @tyrellturing.bsky.social · 14/11/2025This raises what I like to call the "AI test for tasks". If many people use AI to do task X, then that tells you that task X is actually just a brainless administrative exercise. Any such task should probably be eliminated, and if that's not an option, modified to make automation even easier. 6648
Reposted by Bowen ZhengPaolo Crosetto @paolocrosetto.bsky.social · 12/11/2025What is the most profitable industry in the world, this side of the law? Not oil, not IT, not pharma. It's *scientific publishing*. We call this the Drain of Scientific Publishing. Paper: arxiv.org/abs/2511.04820 Background: doi.org/10.1162/qss_... Thread @markhanson.fediscience.org.ap.brid.gy 👇 8334238
Reposted by Bowen ZhengShahab Bakhtiari @shahabbakht.bsky.social · 04/10/2025The way Sutton himself interprets the “bitter lesson” in this interview definitely caught a lot of bitter lesson enthusiasts off guard. LLMs not actually being an example of the bitter lesson was quite a nuance no one saw coming. youtu.be/21EYKqUsPfg?...youtu.beRichard Sutton – Father of RL thinks LLMs are a dead endYouTube video by Dwarkesh Patel 2372
Reposted by Bowen Zhengtodd gureckis @toddgureckis.bsky.social · 26/09/2025So far, learning traps seem robust to social learning in our cases. Surprisingly, despite many manipulations that have tried to reduce this learning trap, the most effective has been simply being a child (see @emilyliquin.bsky.social's work on traps in children) osf.io/preprints/ps...osf.ioOSF 031
Reposted by Bowen ZhengAaron Milstein @neurosutras.bsky.social · 03/10/2025Interesting new data on BTSP mechanisms from my old Janelia colleague @hiallen72.bsky.social www.biorxiv.org/content/10.1...biorxiv.orgCa2+ Plateau Potentials Reflect Cross-Theta Cortico-Hippocampal Input Dynamics and Acetylcholine for Rapid Formation of Efficient Place-Cell CodeA central tenet of Systems Neuroscience lies in an understanding of memory and behavior through learning rules, but synaptic plasticity has rarely been shown to create functional single-neuron code in... 2228
Reposted by Bowen ZhengMarlene Cohen @marlenecohen.bsky.social · 23/09/2025New preprint! How can you remember an image you saw once, even after seeing thousands of them? We find a role for humble mid-level visual cortex in high-capacity, one-shot learning. doi.org/10.1101/2025.09.22.677855 🧵🧪1/doi.orgNeuronal signatures of successful one-shot memory in mid-level visual cortexHigh-capacity, one-shot visual recognition memory challenges theories of learning and neural coding because it requires rapid, robust, and durable representations. Most studies have focused on the hip... 39228
Reposted by Bowen ZhengMark Histed @markhisted.org · 22/09/2025The New York Times piece today about US science is terrible and wrong—in many ways. I could write a whole article about this, but as one example: “To close observers, the original crisis began well before any of this…” No. I’m a close observer of science, and this is incorrect. 24908223
Reposted by Bowen ZhengRicard Solé @ricardsole.bsky.social · 10/09/2025Can a single cell learn? Even without a brain, some microbes show simple forms of cognition. Can this basal cognition be engineered? Check our new paper with @jordiplam.bsky.social on the minimal synthetic circuits & their cognitive limits. @drmichaellevin.bsky.social www.biorxiv.org/content/10.1... 510942
Reposted by Bowen ZhengIris van Rooij 💭 @irisvanrooij.bsky.social · 22/08/2025LLRX republished the blogpost www.llrx.com/2025/08/ai-s...llrx.comAI slop and the destruction of knowledge – LLRX 0185
Reposted by Bowen ZhengAnn Kennedy @antihebbiann.bsky.social · 20/08/2025I wrote a Comment on neurotheory, and now you can read it! Some thoughts on where neurotheory has and has not taken root within the neuroscience community, how it has shaped those subfields, and where we theorists might look next for fresh adventures. www.nature.com/articles/s41...nature.comTheoretical neuroscience has room to growNature Reviews Neuroscience - The goal of theoretical neuroscience is to uncover principles of neural computation through careful design and interpretation of mathematical models. Here, I examine... 815152
Reposted by Bowen ZhengDare Obasanjo @carnage4life.bsky.social · 20/08/2025MIT’s NANDA initiative found that 95% of generative AI deployments fail after interviewing 150 execs, surveying 350 workers, and analyzing 300 projects. The real “productivity gains” seem to come from layoffs and squeezing more work from fewer people not AI.fortune.comMIT report: 95% of generative AI pilots at companies are failingThere’s a stark difference in success rates between companies that purchase AI tools from vendors and those that build them internally. 7746051877
Reposted by Bowen ZhengIris van Rooij 💭 @irisvanrooij.bsky.social · 12/08/2025AI slop and the destruction of knowledge irisvanrooijcogsci.com/2025/08/12/a...irisvanrooijcogsci.comAI slop and the destruction of knowledgeThis week I was looking for info on what cognitive scientists mean when they speak of ‘domain-general’ cognition. I was curious, because the nuances are relevant for something I am researching at t… 22523266
Reposted by Bowen ZhengMiguel Aguilera @maguilera.net · 24/07/2025Our paper just out in Nature Communications! www.nature.com/articles/s41... We introduce curved neural networks naturally introducing high-order interactions showing: • explosive phase transitions • enhanced memory retrieval via self-annealing • increased memory capacity through geometric curvaturenature.comExplosive neural networks via higher-order interactions in curved statistical manifolds - Nature CommunicationsHigher-order interactions shape complex neural dynamics but are hard to model. Here, authors use a generalization of the maximum entropy principle to introduce a family of curved neural networks, reve... 1258
Reposted by Bowen ZhengJason Climer @jrclimer.bsky.social · 23/07/2025So what drives drift? We looked closely at the neurons and found that a small group of them were stable. These stable neurons were more excitable than neighboring cells, making the fate of the cells predictable. 162
Reposted by Bowen ZhengAlison Phipps አሊሰን @alisonphipps.bsky.social · 21/07/2025DO EVERYTHING YOU CAN TO GET FOOD AND WATER IN TO GAZA. This is from Lemkin Institute begging..... we are all begging. 7616398
Reposted by Bowen ZhengDan Levenstein @dlevenstein.bsky.social · 17/07/2025Really interesting results, suggesting that long-term place field stability is not from long-lasting synaptic plasticity, but is instead from an increased *probability of plasticity induction* in subsequent days.nature.comFormation of an expanding memory representation in the hippocampus - Nature NeuroscienceMultiday imaging of CA1 neurons during learning reveals that the representation stabilizes as the number of readily retrievable, information-rich and stable place cells increases and suggests novel me... 1429
Reposted by Bowen ZhengRosanne Rademaker @rademaker.bsky.social · 02/07/2025Who doesn't like a good model of the brain? Yet, from simple regression to neural nets, some limitations keep popping up (e.g., overfitting) @mjwolff.bsky.social & I saw some cool but puzzling data, ran a quick analysis & found one such limitation: model mimicry. Now in #naturecommunications &🧵belowrdcu.beModel mimicry limits conclusions about neural tuning and can mistakenly imply unlikely priorsNature Communications - Model mimicry limits conclusions about neural tuning and can mistakenly imply unlikely priors 16924
Reposted by Bowen ZhengHannah Payne @hannahpayne.bsky.social · 11/06/2025My latest Aronov lab paper is now published @Nature! When a chickadee looks at a distant location, the same place cells activate as if it were actually there 👁️ The hippocampus encodes where the bird is looking, AND what it expects to see next -- enabling spatial reasoning from afar bit.ly/3HvWSum 1027486
Reposted by Bowen ZhengKate Watson @loreandordure.com · 08/05/2025It occurred to me last night that microwaves are kinda like LLMs. Remember when they first came out, people bought microwave cookbooks, and special vented plastic cookware, and they were going to change the way we cooked and ate forever? Now we use them for defrosting mince, and reheating cold tea. 1117933
Reposted by Bowen ZhengJonathan A. Michaels @jonathanamichaels.bsky.social · 02/04/2025We’re excited about this project! We present a model of motor savings without the need for context. 0145
Reposted by Bowen ZhengGuido Meijer @guidomeijer.com · 27/03/2025Kilosort4 detects a LOT of neurons, I recorded 15k neurons in one year 🤯 Traditionally, one would curate these detected units to see if they are well isolated single neurons. This is not feasible anymore, so today let's look at three options that are out there to automate this process! 🤖👇 24112
Reposted by Bowen ZhengNancy Kanwisher @nancykanwisher.bsky.social · 26/03/2025I’m hiring a full-time lab tech for two years starting May/June. Strong coding skills required, ML a plus. Our research on the human brain uses fMRI, ANNs, intracranial recording, and behavior. A great stepping stone to grad school. Apply here: careers.peopleclick.com/careerscp/cl... ......careers.peopleclick.comTechnical Associate I, Kanwisher LabMIT - Technical Associate I, Kanwisher Lab - Cambridge MA 02139 56348
Reposted by Bowen ZhengNature Neuroscience @natneuro.nature.com · 25/03/2025Behavioral timescale synaptic plasticity (BTSP), not Hebbian spike-timing-dependent plasticity (STDP), explains heterogenous place field shifting in the mouse hippocampus 🧠🧪 www.nature.com/articles/s41...nature.comSynaptic plasticity rules driving representational shifting in the hippocampus - Nature NeuroscienceMadar et al. report that behavioral timescale synaptic plasticity (BTSP), not spike-timing-dependent plasticity, explains heterogeneous place fields shifting in the hippocampus. The probability of BTS... 03113
Reposted by Bowen ZhengMark Haselgrove @markhaselgrove.bsky.social · 08/03/2025In contrast to the wide spread applause that this piece seems to be getting, I disagree with a lot of what is said here. 1/N 3239
Reposted by Bowen ZhengOlivia Guest · Ολίβια Γκεστ @olivia.science · 01/03/2025Tired but happy to say this is out w @andreaeyleen.bsky.social: Are Neurocognitive Representations 'Small Cakes'? philsci-archive.pitt.edu/24834/ We analyse cog neuro theories showing how vicious regress, e.g. the homunculus fallacy, is (sadly) alive and well — and importantly how to avoid it. 1/ 2526080
Reposted by Bowen ZhengMushtaq Bilal, PhD @mushtaqbilalphd.bsky.social · 07/02/2025Meta illegaly downloaded 80+ terabytes of books from LibGen, Anna's Archive, and Z-library to train their AI models. In 2010, Aaron Swartz downloaded only 70 GBs of articles from JSTOR (0.0875% of Meta). Faced $1 million in fine and 35 years in jail. Took his own life in 2013. 5174783989