Reposted by Frances YapJörg Stülke @joergstuelke.bsky.social · 26/09/2026Identification of a novel RNA-modifying enzyme! RlmS! #SubtiWiki www.pnas.org/doi/10.1073/...pnas.orgActivity-based profiling of bacterial RNA-modifying enzymes reveals species-specific 5-methyluridine modification in Bacillus subtilis 23S rRNA | PNASRNA modifications play an important role in biological processes. Mapping the diversity of RNA chemistry and studying the biological function of in... 01910
Frances Yap @ribo1214.bsky.social · 24/09/2026Mycotoxin associated with hibernating ribosomes in human cells 🔽 #Ribosome 010
Reposted by Frances YapMark Mandel @markjmandel.bsky.social · 23/09/2026Career retrospective from Tom Silhavy as he winds down his laboratory. An amazing legacy from which I am fortunate to have benefitted. @princetonmolbio.bsky.social journals.asm.org/doi/10.1128/...journals.asm.orgmSphere Legacy: A career built on suppressors | mSphereI grew up in a small town, Wauseon, in the northwest corner of Ohio. Although I enjoyed science and math classes in high school, a career in research and academia never crossed my mind. I worked for s... 2104
Frances Yap @ribo1214.bsky.social · 24/09/2026TT faculty opening at Indiana University-Bloomington. ⬇️ 002
Frances Yap @ribo1214.bsky.social · 18/09/2026www.cell.com/cell/abstrac...cell.comPhosphate backbone epitranscriptomics: Discovery of natural RNA phosphorothioates and their writer machineryPhosphorothioates, stereospecific modifications of the RNA phosphate backbone in anaerobic archaea, expand the epitranscriptome beyond nucleobases and ribose sugars. Installed by Esti enzymes at conse... 031
Reposted by Frances YapPrahathees Eswara @eswaralab.bsky.social · 02/09/2026Thrilled to share this insightful work of Asher King @subtisilly.bsky.social and Pilar Horigian @pilarhorigian.bsky.social! #ProudPI #MicroSky #AMR #SubtiWiki In this work, we reveal the *magic* behind the protective effects of magnesium in Bacillus subtilis. Read Asher's 🧵 below for more details. 22712
Reposted by Frances YapKevin England @kevinengland.bsky.social · 13/09/2026Our paper (and my first first-author) is out! The alarmone pGpp inhibits translation through GTP depletion academic.oup.com/nar/article/... 🦠🚨🤠 @narjournal.bsky.socialacademic.oup.com 23419
Frances Yap @ribo1214.bsky.social · 13/09/2026Mycobacterial rRNA methyltransferase GidB modulates discrimination of mischarged tRNA doi.org/10.7554/eLif... #MicroSky #RNASky 🧪doi.orgRibosomal RNA methylation by GidB modulates discrimination of mischarged tRNAThe ribosomal rRNA methyltransferase GidB is involved in the discrimination of mischarged tRNAs in mycobacteria. 054
Frances Yap @ribo1214.bsky.social · 11/09/2026#RNASky #ribosome Manipulation of protein translation and stem cell self-renewal by CRISPR activation of rRNA transcription | Science www.science.org/doi/10.1126/...science.orgManipulation of protein translation and stem cell self-renewal by CRISPR activation of rRNA transcriptionRibosomal RNA (rRNA) transcription rates vary during development, and their dysregulation is linked to diseases such as cancer and ribosomopathies. Owing to their high abundance and genomic redundancy... 011
Reposted by Frances YapGeorge O'Toole (he/him/his) @geiselbiofilm.bsky.social · 08/09/2026New in JB: Rangarajan and Waters review the role of divalent metals, particularly Mn2+, Mg2+, Zn2+, Ca2+, and Fe2+, in c-di-GMP signaling, including how these metals impact DGC and PDE enzyme activity. journals.asm.org/doi/10.1128/... @asm.org #JBacteriol @microsky.bsky.social 0137
Reposted by Frances YapMarleny García Lozano @marlenygarcial.bsky.social · 07/09/2026The second chapter of my PhD thesis is out in @NatureComms 🎉!! we found that a "Yellow" protein, the same gene family known for pigmentation in many insects, has been repurposed to protect a beetle's bacterial symbiont. www.nature.com/articles/s41...nature.comYellow protein co-opted to sustain obligate symbiosis in leaf beetles - Nature CommunicationsInsects have evolved diverse strategies to protect their genome-reduced symbionts during vertical transmission. Here, authors show that tortoise beetles have co-opted a Yellow protein to form spheres ... 12011
Reposted by Frances YapZeynep Baharoglu @zeynepbaharoglu.bsky.social · 06/09/2026☀️ 🌘 RNA Modifications Newsletter -End of summer reading for people who find modified nucleosides relaxing. Highlights: anticodon-loop crosstalk, MiaA/tryptophan attenuation, ribosomes missing >10 rRNA modifications causing wrong conformations, and growth-dependent remodeling of the tRNA pool.rnamodifupdates.substack.com☀️ 🌘 RNA Modifications Newsletter - End of summer 2026 editionIssue #13 062
Reposted by Frances YapColin Kremer @quant-ecology.bsky.social · 03/09/2026“Cool” new NSF postdoc position available in my lab at UConn, studying our unique Arctic phytoplankton collection and the interactive effects of temperature, light, and photoperiod. 3 years of funding, detailed job ad here: s.uconn.edu/q1o0itl62l. 35251
Frances Yap @ribo1214.bsky.social · 03/09/2026#MicroSky act fast! Sept 4th is the registration deadline for Midwest Microbial Pathogenesis Conference (MMPC) that will be held in Minneapolis from Sept 25-27 #mmpc2026 047
Reposted by Frances YapAlexey Amunts @amunts.bsky.social · 31/08/2026A sad day. Ada's pioneering work on the ribosome changed how we understand one of the central machines of life. She is a remarkable example of curiosity and boldness in pursuing questions that seemed impossible. Her scientific courage and persistence has been an inspiration.wis-wander.weizmann.ac.ilProf. Ada Yonath, Nobel Laureate and a Model of Scientific Perseverance, Has Passed Away - Weizmann Wonder Wander - News, Features and DiscoveriesFrom pursuing an impossible dream to uncovering one of the cell’s best-kept secrets and advancing the design of improved antibiotics 04518
Reposted by Frances YapCarl Zimmer @carlzimmer.com · 26/08/2026Nature honors Dolly Parton's scientific legacy. www.nature.com/articles/d41...nature.comDolly Parton dies aged 80 – researchers celebrate her contributions to scienceThe country singer was an advocate for vaccines, public health, literacy and marginalized communities. 3737272
Frances Yap @ribo1214.bsky.social · 24/08/2026"16S ribosomal RNA modification drives transcript-specific translation efficiency" pubmed.ncbi.nlm.nih.gov/42632017/ from @ramamurthilab.bsky.social lab #Ribosome #RNASky #MicroSkypubmed.ncbi.nlm.nih.gov16S ribosomal RNA modification drives transcript-specific translation efficiency - PubMedBacterial ribosomal RNAs (rRNAs) are decorated with conserved nucleotide modifications, but the functionality of these modifications is often underexplored. MraW (RsmH) is a 16S rRNA methyltransferase. Here, we report that deletion of mraW corrects a late-stage sporulation defect in Bacillus subtili … 064
Reposted by Frances YapEvgenii Protasov @evgenii-protasov.bsky.social · 24/08/2026Small proteins in prokaryotes, a fascinating world #microbiology #proteins #prokaryotes #MicroSky @femsjournals.bsky.social @femsmicro.org doi.org/10.1093/fems...doi.orgSmall proteins in prokaryotes, a fascinating worldWolfgang R Hess, Kai Papenfort, Cynthia M Sharma, Franz Narberhaus, Ruth A Schmitz; Small proteins in prokaryotes, a fascinating world, microLife, , uqag02 1218
Reposted by Frances YapLuiz Pedro Carvalho, PhD @luizcarvalholab.bsky.social · 21/08/2026academic.oup.com/nar/article/...academic.oup.comRibosomal RNA cleavage by the previously unidentified RelS–RelI toxin–antitoxin system controls growth of Mycobacterium tuberculosisAbstract. Toxin–antitoxin (TA) systems use diverse strategies to control bacterial growth and represent attractive therapeutic targets to fight pathogens. 072
Reposted by Frances YapPatrick R. Secor @prsecor.bsky.social · 21/08/2026I’ll soon be #Hiring a postdoc to join the Secor Lab at Montana State University. This NIH-funded position will investigate phage biology in Lyme disease spirochetes. The official ad will be available soon. Please share with anyone who might be interested! #MicroSky #PhageSky 🔬🦠🧪🧫 34644
Frances Yap @ribo1214.bsky.social · 20/08/2026🤯 #Ribosome www.biorxiv.org/content/10.6...biorxiv.orgA variant rRNA serves as a translational repressor in Plasmodium falciparumRibosome composition can vary through differences in associated proteins, post-transcriptional and post-translational modifications. Such heterogeneity enables ribosomes to respond to environmental[1]... 0112
Frances Yap @ribo1214.bsky.social · 18/08/2026".. LLM use is already reshaping how scientific ideas are articulated and evaluated in the US federal funding system.." www.pnas.org/doi/10.1073/... #AcademicSky 🧪pnas.orgThe rise of large language models and the direction and impact of US federal research funding | PNASFederal research funding shapes the direction, diversity, and impact of the US scientific enterprise. Large language models (LLMs) are rapidly diff... 010
Frances Yap @ribo1214.bsky.social · 18/08/2026Hypo-modification of 23S rRNA in the ribosomal PTC reduces translation rate. academic.oup.com/nar/article/... #Ribosome #RNASkyacademic.oup.com23S rRNA modifications stimulate catalytic activity and prevent the formation of alternative structuresAbstract. Ribosomal RNA (rRNA) modifications cluster around the peptidyl transferase centre (PTC), the catalytic centre of the ribosome, yet their collecti 010
Reposted by Frances Yapelizabethginexi.bsky.social @elizabethginexi.bsky.social · 14/08/2026‼️NIH is proposing to change NIH Peer Review outcomes. Instead of impact scores they propose 3 categories: "Most competitive" "Competitive", or "Not discussed" This RFI link will accept your comments/feedback on this proposal until 10/13/26. grants.nih.gov/grants/guide...grants.nih.govNOT-OD-26-088: Request for Information (RFI) on Proposed Changes to Reporting Outcomes from NIH Peer ReviewNIH Funding Opportunities and Notices in the NIH Guide for Grants and Contracts: Request for Information (RFI) on Proposed Changes to Reporting Outcomes from NIH Peer Review NOT-OD-26-088. NIH 42734
Frances Yap @ribo1214.bsky.social · 15/08/2026🚨Submit your comments by Oct 13, 2026. ⬇️ #AcademicSky 02210
Reposted by Frances YapDrug Monkey @drugmonkey.bsky.social · 14/08/2026Holy shit. “the final overall impact score or percentile on which the categorization was based would not be released to any of these parties. “ 43920
Reposted by Frances YapbioRxivpreprint @biorxivpreprint.bsky.social · 13/08/2026The intrinsically disordered AR2 domain of RNase E binds mRNA translation initiation regions www.biorxiv.org/content/10.64898/20… 011
Frances Yap @ribo1214.bsky.social · 10/08/2026🚨 postdoc position in the dept of Microbiology at NYU (Darwin lab) ⬇️ 001
Reposted by Frances YapSohini Ramachandran @sramach.bsky.social · 05/08/2026Our newest preprint - stay tuned for more from @alexandr.bsky.social! 0209
Reposted by Frances YapBrian Stevenson Ph.D. spirochete lab @bstevensonlab.bsky.social · 04/08/2026Midwest Microbial Pathogenesis Conference (MMPC) September 25-27, 2026 University of Minnesota Minneapolis, MN Register now! #MicroSky 042
Reposted by Frances YapGc Rox @gcrox.bsky.social · 08/07/2026news.feinberg.northwestern.edu/2026/07/06/i...news.feinberg.northwestern.eduIntricate Molecular Mechanisms Help Bacteria Evade Immune Detection - News CenterNorthwestern scientists have identified a novel mechanism utilized by the bacteria responsible for gonorrhea to evade immune detection and achieve widespread infection, according to a recent study pub... 031
Reposted by Frances YapMolecular Microbiology @molmicrounihoh.bsky.social · 04/08/2026Save the date! The 23rd International Conference on Bacilli and Gram-Positive Bacteria will take place from June 29 to July 2 in Ljubljana, Slovenia! #pogacar #pogi #subtiwiki 157
Reposted by Frances YapJulia Willett @jlewillett.bsky.social · 04/08/2026I'm excited to be co-organizing the 2026 Midwest Microbial Pathogenesis Conference, which will take place Sept 25-27 on the UMN campus in Minneapolis! Poster abstracts due Aug 7! Submit yours & register here ➡️ mmpc2026.umn.edummpc2026.umn.eduRegistration | Midwest Microbial Pathogenesis Conference 2026 02017
Frances Yap @ribo1214.bsky.social · 30/07/2026a 60+ pages of review. It's a textbook for bacterial stress adaptation. Thanks @kirstenjunglab.bsky.social 's lab for the comprehensive review. #MicroSky 021
Reposted by Frances YapArturo Carabias @arturocdr.bsky.social · 16/07/2026 🧬 Thrilled to share our latest @biorxiv-microbiol.bsky.social preprint! Here we find that Retron-IX build crazy supramolecular rings scaffolded by DNA molecules that sense phage infection! www.biorxiv.org/content/10.6... Read more below🧵! (1/X) 37128
Reposted by Frances YapSchrader Lab @schraderlab.bsky.social · 14/07/2026New preprint from my lab and Sean Crosson's lab at MSU. We show that BR-bodies in Brucella are linked to regulation of the type IV secretion system and stress tolerance. www.biorxiv.org/content/10.6...biorxiv.orgBR-bodies link RNA homeostasis to stress tolerance and intracellular fitness in BrucellaBacterial gene expression depends on the coordinated regulation of RNA synthesis, processing, and decay. The conserved RNA degradosome scaffold, Ribonuclease E (RNase E), assembles into phase-separate... 173
Frances Yap @ribo1214.bsky.social · 10/07/2026Unusual ribosomes controls translation fidelity- other than in naked mole rats, octopuses 🐙 have the “adaptive” ribosomes too ⬇️ . The beauty of studying non model organisms! #Ribosome 🧪 042
Reposted by Frances YapSorek Lab @soreklab.bsky.social · 09/07/2026Our paper out in Science today: The Metis defense system senses molecular byproducts released when a phage degrades the bacterial genome, and then prevents replication of the phage in the infected cell Congratulations @ostermanilya.bsky.social and co-authors!science.orgBacteria sense virus-induced genome degradation via methylated mononucleotidesPhages often degrade the genome of their bacterial host to individual nucleotides. Here we describe Metis, a bacterial defense system that directly senses phage-mediated host genome degradation. Metis... 410353
Reposted by Frances YapSebastian S. Cocioba @atinygreencell.bsky.social · 08/07/2026@breakliquid.bsky.social and I are delighted to say our OpenEVO preprint is finally live! An open source hand-made turbidostat that's modular, affordable, and made to be customized. Designed with love for the research community. Enjoy!!!💚 www.biorxiv.org/content/10.6...biorxiv.orgOpenEvo: An Open-Source Platform for Automated Evolution and AnalysisHere we introduce OpenEvo, a fully open-source, low-cost turbidostat platform for automated continuous culture and directed evolution experiments. Existing tools are expensive, complex, or lack open-s... 211535
Reposted by Frances YapZeynep Baharoglu @zeynepbaharoglu.bsky.social · 09/07/2026QutRNA2: robust tRNA modification discovery from Nanopore direct tRNA sequencing 💫💫https://academic.oup.com/nargab/article/8/3/lqag065/8725956?login=falseacademic.oup.comQutRNA2: robust tRNA modification discovery from Nanopore direct tRNA sequencingAbstract. Transfer RNAs (tRNAs) are essential for protein synthesis and are extensively modified to ensure their structure and function. Direct RNA sequenc 053
Reposted by Frances YapValeria Reyes Ruiz @reyesruiz.bsky.social · 25/06/2026Our lab is hiring an enthusiastic and motivated research specialist to study host-pathogen interactions in the context of S. aureus infection. For more information, see below: Lab website: www.reyesruizlab.org jobs.wisc.edu/jobs/researc...jobs.wisc.eduResearch Specialist - Madison, Wisconsin, United StatesCurrent Employees: If you are currently employed at any of the Universities of Wisconsin, log in to Workday to apply through the internal application process.Job Category:Academic StaffEmployment Type... 02027
Reposted by Frances YapLaura K. Jennings @laurakjennings.bsky.social · 29/06/2026📢 We're hiring! The Department of Microbiology & Cell Biology at Montana State University is hiring an Assistant Professor of Microbiology. We welcome applicants working in microbial pathogenesis, immunology, genetics, microbial evolution, and related areas. Apply: jobs.montana.edu/postings/52009 16585
Reposted by Frances YapPrahathees Eswara @eswaralab.bsky.social · 29/06/2026Who would've thought YjlC-Ndh will be a hot topic in 2026!?! 🔥 Here is our preprint (mostly genetics): pubmed.ncbi.nlm.nih.gov/41928947/ Shedding light on YfhS and YjlC: novel effectors of the NADH dehydrogenase activity of the electron transport chain in Bacillus subtilis #MicroSky #SubtiWikipubmed.ncbi.nlm.nih.govShedding light on YfhS and YjlC: novel effectors of the NADH dehydrogenase activity of the electron transport chain in Bacillus subtilis - PubMedOxidative phosphorylation is the most efficient way of generating ATP in respiring cells. As high energy electrons are the major source of reactive oxygen species their production needs to be carefull... 162