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Frances Yap

@ribo1214.bsky.social
1.4K followers 757 following 275 posts

Principal Investigator | Northwestern University Microbiology-Immunology | #RNA #ribosome #antibiotic resistance #AMR #MRSA | hails from 🇲🇾 by way of 🇹🇼 |Views are my own. 🧪 🧬🔬💉

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Frances Yap @ribo1214.bsky.social · 28/09/2026
#MicroSky #Antibiotics #AMR
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Jörg Stülke @joergstuelke.bsky.social · 26/09/2026
Identification of a novel RNA-modifying enzyme! RlmS! #SubtiWiki www.pnas.org/doi/10.1073/...
pnas.org
Activity-based profiling of bacterial RNA-modifying enzymes reveals species-specific 5-methyluridine modification in Bacillus subtilis 23S rRNA | PNAS
RNA modifications play an important role in biological processes. Mapping the diversity of RNA chemistry and studying the biological function of in...
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Frances Yap @ribo1214.bsky.social · 24/09/2026
Mycotoxin associated with hibernating ribosomes in human cells 🔽 #Ribosome
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Mark Mandel @markjmandel.bsky.social · 23/09/2026
Career retrospective from Tom Silhavy as he winds down his laboratory. An amazing legacy from which I am fortunate to have benefitted. @princetonmolbio.bsky.social journals.asm.org/doi/10.1128/...
journals.asm.org
mSphere Legacy: A career built on suppressors | mSphere
I grew up in a small town, Wauseon, in the northwest corner of Ohio. Although I enjoyed science and math classes in high school, a career in research and academia never crossed my mind. I worked for s...
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Frances Yap @ribo1214.bsky.social · 24/09/2026
TT faculty opening at Indiana University-Bloomington. ⬇️
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Frances Yap @ribo1214.bsky.social · 18/09/2026
www.cell.com/cell/abstrac...
cell.com
Phosphate backbone epitranscriptomics: Discovery of natural RNA phosphorothioates and their writer machinery
Phosphorothioates, stereospecific modifications of the RNA phosphate backbone in anaerobic archaea, expand the epitranscriptome beyond nucleobases and ribose sugars. Installed by Esti enzymes at conse...
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Prahathees Eswara @eswaralab.bsky.social · 02/09/2026
Thrilled to share this insightful work of Asher King @subtisilly.bsky.social and Pilar Horigian @pilarhorigian.bsky.social! #ProudPI #MicroSky #AMR #SubtiWiki In this work, we reveal the *magic* behind the protective effects of magnesium in Bacillus subtilis. Read Asher's 🧵 below for more details.
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Kevin England @kevinengland.bsky.social · 13/09/2026
Our paper (and my first first-author) is out! The alarmone pGpp inhibits translation through GTP depletion academic.oup.com/nar/article/... 🦠🚨🤠 @narjournal.bsky.social
academic.oup.com
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Frances Yap @ribo1214.bsky.social · 13/09/2026
Mycobacterial rRNA methyltransferase GidB modulates discrimination of mischarged tRNA doi.org/10.7554/eLif... #MicroSky #RNASky 🧪
doi.org
Ribosomal RNA methylation by GidB modulates discrimination of mischarged tRNA
The ribosomal rRNA methyltransferase GidB is involved in the discrimination of mischarged tRNAs in mycobacteria.
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Frances Yap @ribo1214.bsky.social · 11/09/2026
#RNASky #ribosome Manipulation of protein translation and stem cell self-renewal by CRISPR activation of rRNA transcription | Science www.science.org/doi/10.1126/...
science.org
Manipulation of protein translation and stem cell self-renewal by CRISPR activation of rRNA transcription
Ribosomal RNA (rRNA) transcription rates vary during development, and their dysregulation is linked to diseases such as cancer and ribosomopathies. Owing to their high abundance and genomic redundancy...
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George O'Toole (he/him/his) @geiselbiofilm.bsky.social · 08/09/2026
New in JB: Rangarajan and Waters review the role of divalent metals, particularly Mn2+, Mg2+, Zn2+, Ca2+, and Fe2+, in c-di-GMP signaling, including how these metals impact DGC and PDE enzyme activity. journals.asm.org/doi/10.1128/... @asm.org #JBacteriol @microsky.bsky.social
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Marleny García Lozano @marlenygarcial.bsky.social · 07/09/2026
The second chapter of my PhD thesis is out in @NatureComms 🎉!! we found that a "Yellow" protein, the same gene family known for pigmentation in many insects, has been repurposed to protect a beetle's bacterial symbiont. www.nature.com/articles/s41...
nature.com
Yellow protein co-opted to sustain obligate symbiosis in leaf beetles - Nature Communications
Insects have evolved diverse strategies to protect their genome-reduced symbionts during vertical transmission. Here, authors show that tortoise beetles have co-opted a Yellow protein to form spheres ...
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Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 06/09/2026
☀️ 🌘 RNA Modifications Newsletter -End of summer reading for people who find modified nucleosides relaxing. Highlights: anticodon-loop crosstalk, MiaA/tryptophan attenuation, ribosomes missing >10 rRNA modifications causing wrong conformations, and growth-dependent remodeling of the tRNA pool.
rnamodifupdates.substack.com
☀️ 🌘 RNA Modifications Newsletter - End of summer 2026 edition
Issue #13
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Colin Kremer @quant-ecology.bsky.social · 03/09/2026
“Cool” new NSF postdoc position available in my lab at UConn, studying our unique Arctic phytoplankton collection and the interactive effects of temperature, light, and photoperiod. 3 years of funding, detailed job ad here: s.uconn.edu/q1o0itl62l.
Picture of centric Arctic diatom
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Frances Yap @ribo1214.bsky.social · 03/09/2026
#MicroSky act fast! Sept 4th is the registration deadline for Midwest Microbial Pathogenesis Conference (MMPC) that will be held in Minneapolis from Sept 25-27 #mmpc2026
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Alexey Amunts @amunts.bsky.social · 31/08/2026
A sad day. Ada's pioneering work on the ribosome changed how we understand one of the central machines of life. She is a remarkable example of curiosity and boldness in pursuing questions that seemed impossible. Her scientific courage and persistence has been an inspiration.
wis-wander.weizmann.ac.il
Prof. Ada Yonath, Nobel Laureate and a Model of Scientific Perseverance, Has Passed Away - Weizmann Wonder Wander - News, Features and Discoveries
From pursuing an impossible dream to uncovering one of the cell’s best-kept secrets and advancing the design of improved antibiotics
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Carl Zimmer @carlzimmer.com · 26/08/2026
Nature honors Dolly Parton's scientific legacy. www.nature.com/articles/d41...
nature.com
Dolly Parton dies aged 80 – researchers celebrate her contributions to science
The country singer was an advocate for vaccines, public health, literacy and marginalized communities.
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Frances Yap @ribo1214.bsky.social · 24/08/2026
"16S ribosomal RNA modification drives transcript-specific translation efficiency" pubmed.ncbi.nlm.nih.gov/42632017/ from @ramamurthilab.bsky.social lab #Ribosome #RNASky #MicroSky
pubmed.ncbi.nlm.nih.gov
16S ribosomal RNA modification drives transcript-specific translation efficiency - PubMed
Bacterial ribosomal RNAs (rRNAs) are decorated with conserved nucleotide modifications, but the functionality of these modifications is often underexplored. MraW (RsmH) is a 16S rRNA methyltransferase. Here, we report that deletion of mraW corrects a late-stage sporulation defect in Bacillus subtili …
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Evgenii Protasov @evgenii-protasov.bsky.social · 24/08/2026
Small proteins in prokaryotes, a fascinating world #microbiology #proteins #prokaryotes #MicroSky @femsjournals.bsky.social @femsmicro.org doi.org/10.1093/fems...
doi.org
Small proteins in prokaryotes, a fascinating world
Wolfgang R Hess, Kai Papenfort, Cynthia M Sharma, Franz Narberhaus, Ruth A Schmitz; Small proteins in prokaryotes, a fascinating world, microLife, , uqag02
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Luiz Pedro Carvalho, PhD @luizcarvalholab.bsky.social · 21/08/2026
academic.oup.com/nar/article/...
academic.oup.com
Ribosomal RNA cleavage by the previously unidentified RelS–RelI toxin–antitoxin system controls growth of Mycobacterium tuberculosis
Abstract. Toxin–antitoxin (TA) systems use diverse strategies to control bacterial growth and represent attractive therapeutic targets to fight pathogens.
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Patrick R. Secor @prsecor.bsky.social · 21/08/2026
I’ll soon be #Hiring a postdoc to join the Secor Lab at Montana State University. This NIH-funded position will investigate phage biology in Lyme disease spirochetes. The official ad will be available soon. Please share with anyone who might be interested! #MicroSky #PhageSky 🔬🦠🧪🧫
An engorged tick with fluorescent bacteria in its midgut
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Frances Yap @ribo1214.bsky.social · 20/08/2026
🤯 #Ribosome www.biorxiv.org/content/10.6...
biorxiv.org
A variant rRNA serves as a translational repressor in Plasmodium falciparum
Ribosome composition can vary through differences in associated proteins, post-transcriptional and post-translational modifications. Such heterogeneity enables ribosomes to respond to environmental[1]...
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Frances Yap @ribo1214.bsky.social · 18/08/2026
".. LLM use is already reshaping how scientific ideas are articulated and evaluated in the US federal funding system.." www.pnas.org/doi/10.1073/... #AcademicSky 🧪
pnas.org
The rise of large language models and the direction and impact of US federal research funding | PNAS
Federal research funding shapes the direction, diversity, and impact of the US scientific enterprise. Large language models (LLMs) are rapidly diff...
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Frances Yap @ribo1214.bsky.social · 18/08/2026
Hypo-modification of 23S rRNA in the ribosomal PTC reduces translation rate. academic.oup.com/nar/article/... #Ribosome #RNASky
academic.oup.com
23S rRNA modifications stimulate catalytic activity and prevent the formation of alternative structures
Abstract. Ribosomal RNA (rRNA) modifications cluster around the peptidyl transferase centre (PTC), the catalytic centre of the ribosome, yet their collecti
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Frances Yap @ribo1214.bsky.social · 18/08/2026
#RNASky @zeynepbaharoglu.bsky.social
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elizabethginexi.bsky.social @elizabethginexi.bsky.social · 14/08/2026
‼️NIH is proposing to change NIH Peer Review outcomes. Instead of impact scores they propose 3 categories: "Most competitive" "Competitive", or "Not discussed" This RFI link will accept your comments/feedback on this proposal until 10/13/26. grants.nih.gov/grants/guide...
grants.nih.gov
NOT-OD-26-088: Request for Information (RFI) on Proposed Changes to Reporting Outcomes from NIH Peer Review
NIH Funding Opportunities and Notices in the NIH Guide for Grants and Contracts: Request for Information (RFI) on Proposed Changes to Reporting Outcomes from NIH Peer Review NOT-OD-26-088. NIH
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Frances Yap @ribo1214.bsky.social · 15/08/2026
🚨Submit your comments by Oct 13, 2026. ⬇️ #AcademicSky
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Drug Monkey @drugmonkey.bsky.social · 14/08/2026
Holy shit. “the final overall impact score or percentile on which the categorization was based would not be released to any of these parties. “
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Frances Yap @ribo1214.bsky.social · 14/08/2026
#MicroSky #RNASky
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bioRxivpreprint @biorxivpreprint.bsky.social · 13/08/2026
The intrinsically disordered AR2 domain of RNase E binds mRNA translation initiation regions www.biorxiv.org/content/10.64898/20…
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Frances Yap @ribo1214.bsky.social · 10/08/2026
🚨 postdoc position in the dept of Microbiology at NYU (Darwin lab) ⬇️
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Frances Yap @ribo1214.bsky.social · 07/08/2026
#MicroSky @cruzveralab.bsky.social
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Sohini Ramachandran @sramach.bsky.social · 05/08/2026
Our newest preprint - stay tuned for more from @alexandr.bsky.social!
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Brian Stevenson Ph.D. spirochete lab @bstevensonlab.bsky.social · 04/08/2026
Midwest Microbial Pathogenesis Conference (MMPC) September 25-27, 2026 University of Minnesota Minneapolis, MN Register now! #MicroSky
MMPC Tshirt design. Shows the shape of Minnesota, composed of bacteria and viruses
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Gc Rox @gcrox.bsky.social · 08/07/2026
news.feinberg.northwestern.edu/2026/07/06/i...
news.feinberg.northwestern.edu
Intricate Molecular Mechanisms Help Bacteria Evade Immune Detection - News Center
Northwestern scientists have identified a novel mechanism utilized by the bacteria responsible for gonorrhea to evade immune detection and achieve widespread infection, according to a recent study pub...
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Molecular Microbiology @molmicrounihoh.bsky.social · 04/08/2026
Save the date! The 23rd International Conference on Bacilli and Gram-Positive Bacteria will take place from June 29 to July 2 in Ljubljana, Slovenia! #pogacar #pogi #subtiwiki
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Julia Willett @jlewillett.bsky.social · 04/08/2026
I'm excited to be co-organizing the 2026 Midwest Microbial Pathogenesis Conference, which will take place Sept 25-27 on the UMN campus in Minneapolis! Poster abstracts due Aug 7! Submit yours & register here ➡️ mmpc2026.umn.edu
mmpc2026.umn.edu
Registration | Midwest Microbial Pathogenesis Conference 2026
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Dr Zeinab Rekad 🔬🧬🧪 @zeinabrekad.bsky.social · 01/08/2026
#RNAsky
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Frances Yap @ribo1214.bsky.social · 30/07/2026
💔💔💔
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Frances Yap @ribo1214.bsky.social · 30/07/2026
a 60+ pages of review. It's a textbook for bacterial stress adaptation. Thanks @kirstenjunglab.bsky.social 's lab for the comprehensive review. #MicroSky
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Arturo Carabias @arturocdr.bsky.social · 16/07/2026
🧬 Thrilled to share our latest @biorxiv-microbiol.bsky.social preprint! Here we find that Retron-IX build crazy supramolecular rings scaffolded by DNA molecules that sense phage infection! www.biorxiv.org/content/10.6... Read more below🧵! (1/X)
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Schrader Lab @schraderlab.bsky.social · 14/07/2026
New preprint from my lab and Sean Crosson's lab at MSU. We show that BR-bodies in Brucella are linked to regulation of the type IV secretion system and stress tolerance. www.biorxiv.org/content/10.6...
biorxiv.org
BR-bodies link RNA homeostasis to stress tolerance and intracellular fitness in Brucella
Bacterial gene expression depends on the coordinated regulation of RNA synthesis, processing, and decay. The conserved RNA degradosome scaffold, Ribonuclease E (RNase E), assembles into phase-separate...
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Frances Yap @ribo1214.bsky.social · 10/07/2026
Unusual ribosomes controls translation fidelity- other than in naked mole rats, octopuses 🐙 have the “adaptive” ribosomes too ⬇️ . The beauty of studying non model organisms! #Ribosome 🧪
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Sorek Lab @soreklab.bsky.social · 09/07/2026
Our paper out in Science today: The Metis defense system senses molecular byproducts released when a phage degrades the bacterial genome, and then prevents replication of the phage in the infected cell Congratulations @ostermanilya.bsky.social and co-authors!
science.org
Bacteria sense virus-induced genome degradation via methylated mononucleotides
Phages often degrade the genome of their bacterial host to individual nucleotides. Here we describe Metis, a bacterial defense system that directly senses phage-mediated host genome degradation. Metis...
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Sebastian S. Cocioba @atinygreencell.bsky.social · 08/07/2026
@breakliquid.bsky.social and I are delighted to say our OpenEVO preprint is finally live! An open source hand-made turbidostat that's modular, affordable, and made to be customized. Designed with love for the research community. Enjoy!!!💚 www.biorxiv.org/content/10.6...
biorxiv.org
OpenEvo: An Open-Source Platform for Automated Evolution and Analysis
Here we introduce OpenEvo, a fully open-source, low-cost turbidostat platform for automated continuous culture and directed evolution experiments. Existing tools are expensive, complex, or lack open-s...
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Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 09/07/2026
QutRNA2: robust tRNA modification discovery from Nanopore direct tRNA sequencing 💫💫https://academic.oup.com/nargab/article/8/3/lqag065/8725956?login=false
academic.oup.com
QutRNA2: robust tRNA modification discovery from Nanopore direct tRNA sequencing
Abstract. Transfer RNAs (tRNAs) are essential for protein synthesis and are extensively modified to ensure their structure and function. Direct RNA sequenc
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Valeria Reyes Ruiz @reyesruiz.bsky.social · 25/06/2026
Our lab is hiring an enthusiastic and motivated research specialist to study host-pathogen interactions in the context of S. aureus infection. For more information, see below: Lab website: www.reyesruizlab.org jobs.wisc.edu/jobs/researc...
jobs.wisc.edu
Research Specialist - Madison, Wisconsin, United States
Current Employees: If you are currently employed at any of the Universities of Wisconsin, log in to Workday to apply through the internal application process.Job Category:Academic StaffEmployment Type...
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Laura K. Jennings @laurakjennings.bsky.social · 29/06/2026
📢 We're hiring! The Department of Microbiology & Cell Biology at Montana State University is hiring an Assistant Professor of Microbiology. We welcome applicants working in microbial pathogenesis, immunology, genetics, microbial evolution, and related areas. Apply: jobs.montana.edu/postings/52009
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Frances Yap @ribo1214.bsky.social · 29/06/2026
@nu-bsa.bsky.social @feinberg.northwestern.edu
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Prahathees Eswara @eswaralab.bsky.social · 29/06/2026
Who would've thought YjlC-Ndh will be a hot topic in 2026!?! 🔥 Here is our preprint (mostly genetics): pubmed.ncbi.nlm.nih.gov/41928947/ Shedding light on YfhS and YjlC: novel effectors of the NADH dehydrogenase activity of the electron transport chain in Bacillus subtilis #MicroSky #SubtiWiki
pubmed.ncbi.nlm.nih.gov
Shedding light on YfhS and YjlC: novel effectors of the NADH dehydrogenase activity of the electron transport chain in Bacillus subtilis - PubMed
Oxidative phosphorylation is the most efficient way of generating ATP in respiring cells. As high energy electrons are the major source of reactive oxygen species their production needs to be carefull...
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