Sign in

Álvaro López Codina

@alcodina.bsky.social
915 followers 2.1K following 21 posts

Predoctoral Research Assistant at the Llorca Lab @cniostopcancer.bsky.social working on mTORC1 signaling and cryo-EM ❄️🔬. Intrigued by the structural mechanisms of protein assemblies involved in endomembrane signaling and trafficking 🧪.

PostsRepliesMedia
Reposted by Álvaro López Codina
myosinactncrazy.bsky.social @myosinactncrazy.bsky.social · 10h
www.biorxiv.org/content/10.6...
biorxiv.org
SPIN90 modulates the architecture of lamellipodial actin in an ARPC5L dependent fashion.
The Arp2/3 complex in mammals, consists of 8 iso-complexes with different properties as there are two isoforms of the Arp3, ArpC1 and ArpC5 subunits. All iso-complexes still generate actin branches wh...
022
Reposted by Álvaro López Codina
Cell Reports @cp-cellreports.bsky.social · 8h
Membrane engagement by the HLA-A cytoplasmic tail regulates endocytosis and surface retention
dlvr.it
Membrane engagement by the HLA-A cytoplasmic tail regulates endocytosis and surface retention
Xu et al. identify a membrane responsive segment in the HLA-A cytoplasmic tail that promotes receptor internalization and limits surface retention. Disrupting this region, genetically or with a tail-derived peptide, reduces internalization and preserves surface HLA-I, revealing a receptor intrinsic mechanism that regulates antigen presenting complex availability.
011
Reposted by Álvaro López Codina
erzbergerlab.bsky.social @erzbergerlab.bsky.social · 20h
doi.org/10.1038/s415...
doi.org
Control of ice thickness in cryo-EM via confinement - Nature Methods
This study explores the use of graphene reservoirs formed over perforated supporting films as a method to precisely control ice thickness during cryo-EM sample preparation.
011
Reposted by Álvaro López Codina
cryoEM papers @cryoempapers.bsky.social · 20h
Conformational diversity of collided ribosomes determines stress signaling pubmed.ncbi.nlm.nih.gov/42818177/ #cryoEM
033
Reposted by Álvaro López Codina
cryoEM papers @cryoempapers.bsky.social · 14h
Taccalonolide AJ uncouples tubulin GTP hydrolysis from microtubule depolymerization www.biorxiv.org/content/10.64898/2026.09.30.755716v1 #cryoEM
011
Reposted by Álvaro López Codina
bioRxiv Biophysics @biorxiv-biophys.bsky.social · 02/10/2026
Simulating Bead-Tethered Biomolecules: Force-Probe Coupled Steered Molecular Dynamics (fp-SMD) in Optical Tweezers Force Spectroscopy www.biorxiv.org/content/10.64898/20…
021
Reposted by Álvaro López Codina
UPenn Institute of Structural Biology @isbupenn.bsky.social · 02/10/2026
Excited to share Chang's Lab new paper in Nature Microbiology! 🎉 A conserved GTPase complex gates exocytosis for defence and parasitism across alveolates. Click on the link to read the entire publication. lnkd.in/eKHBJS7X @yiweichang.bsky.social
lnkd.in
LinkedIn
This link will take you to a page that’s not on LinkedIn
011
Reposted by Álvaro López Codina
Nature Methods @natmethods.nature.com · 02/10/2026
Graphene reservoirs formed over perforated support films precisely control ice thickness during cryo-EM sample preparation. www.nature.com/articles/s41...
nature.com
Control of ice thickness in cryo-EM via confinement - Nature Methods
This study explores the use of graphene reservoirs formed over perforated supporting films as a method to precisely control ice thickness during cryo-EM sample preparation.
074
Reposted by Álvaro López Codina
cryoEM papers @cryoempapers.bsky.social · 02/10/2026
CryoConvNeXt enables robust identification of low-abundance molecular species in experimental cryo-EM data pubmed.ncbi.nlm.nih.gov/42818773/ #cryoEM
043
Reposted by Álvaro López Codina
cryoEM papers @cryoempapers.bsky.social · 02/10/2026
Cryo-tides: synthetic peptides for cryo-EM grid preparation of multi-subunit protein complexes sensitive to the air-water interface www.biorxiv.org/content/10.64898/2026.09.30.755610v1 #cryoEM
0146
Reposted by Álvaro López Codina
Nature @nature.com · 02/10/2026
Nature research paper: A TBK1/ULK1 signalling axis couples lysosomal stress to TFEB activation go.nature.com/4hvQV05
go.nature.com
A TBK1/ULK1 signalling axis couples lysosomal stress to TFEB activation - Nature
Proteomic and phosphoproteomic analyses of lysosomes identify a nutrient-independent regulatory arm of mTORC1 signalling that mediates lysosomal adaptation to stress and whose deregulation underlies tumorigenesis in follicular lymphoma.
081
Reposted by Álvaro López Codina
bioRxiv Cell Biology @biorxiv-cellbio.bsky.social · 02/10/2026
Proteostasis in Podocytes: Role of Cargo Receptor Surf4 and Collagen IV Trafficking www.biorxiv.org/content/10.64898/20…
011
Reposted by Álvaro López Codina
bioRxiv Biochemistry @biorxiv-biochem.bsky.social · 02/10/2026
Taccalonolide AJ uncouples tubulin GTP hydrolysis from microtubule depolymerization www.biorxiv.org/content/10.64898/20…
011
Reposted by Álvaro López Codina
bioRxiv Biochemistry @biorxiv-biochem.bsky.social · 02/10/2026
Global Regulatory Functions of the Human CCR4-NOT Complex in mRNA Deadenylation and Decay www.biorxiv.org/content/10.64898/20…
011
Reposted by Álvaro López Codina
cryoEM papers @cryoempapers.bsky.social · 02/10/2026
A missing piece of the WFC trafficking complex revealed by cryo-EM pubmed.ncbi.nlm.nih.gov/42822428/ #cryoEM
011
Reposted by Álvaro López Codina
cryoEM papers @cryoempapers.bsky.social · 02/10/2026
Acanthamoeba ATP synthase structure reveals the TCA cycle is tethered to OXPHOS pubmed.ncbi.nlm.nih.gov/42822427/ #cryoEM
022
Reposted by Álvaro López Codina
Nature Microbiology @natmicrobiol.nature.com · 02/10/2026
Out Now! A conserved GTPase complex gates exocytosis for defence and parasitism across alveolates #MicroSky
go.nature.com
A conserved GTPase complex gates exocytosis for defence and parasitism across alveolates
Nature Microbiology, Published online: 02 October 2026; doi:10.1038/s41564-026-02501-5A GTPase complex conserved across alveolates gates exocytosis in the parasite Toxoplasma and the ciliate Tetrahymena. In Toxoplasma, an added apical vesicle tightens control over rhoptry secretion, a process critical to host cell invasion.
042
Reposted by Álvaro López Codina
Maryse Lebrun @lebrunlab.bsky.social · 02/10/2026
Thrilled to share our paper "A conserved GTPase complex gates exocytosis for defence and parasitism across alveolates" Ciliates are fantastic to understand rhoptry exocytosis, and cryo-ET once again reveals so much🤩 Thanks to all who contributed. @martacova.bsky.social @yiweichang.bsky.social
0129
Reposted by Álvaro López Codina
Biophysical Journal @biophysj.bsky.social · 02/10/2026
#OPENACCESS: G12 mutations rewire allosteric communication at the Ras–RalGDS interface. Emir Demirbas, Hyunbum Jang, Kayra Kosoglu, Ruth Nussinov, Attila Gursoy, and Ozlem Keskin. buff.ly/6Ik9AvD
cell.com
G12 mutations rewire allosteric communication at the Ras–RalGDS interface
The Ras subfamily is the most extensively studied branch of the Ras superfamily, with 20% of all human tumors having activating mutations in one of the RAS genes. Recent studies have shown that the…
011
Reposted by Álvaro López Codina
Lorna Malone @drlornamalone.bsky.social · 02/10/2026
🎉 That’s a wrap on the Wellcome-MRC in situ Cryo-ET Workshop 2026 at @diamondlightsource.bsky.social! 14 in-person participants and 600+ online attendees from 38 countries joined us for a fantastic week. Thanks to all our participants, trainers, partners and funders!🔬🌍 🔗 lnkd.in/eSBEDWqH
151
Reposted by Álvaro López Codina
Cell Biology J-Club @cellclub.bsky.social · 02/10/2026
www.biorxiv.org/content/10.6...
biorxiv.org
Proteostasis in Podocytes: Role of Cargo Receptor Surf4 and Collagen IV Trafficking
Protein misfolding in the endoplasmic reticulum (ER) of podocytes/glomerular epithelial cells (GECs) induces ER stress and contributes to the pathogenesis of glomerular disease. Activation of IRE1α an...
021
Reposted by Álvaro López Codina
Cell Biology J-Club @cellclub.bsky.social · 02/10/2026
www.biorxiv.org/content/10.6...
biorxiv.org
A FIT2-BLTP1 module sustains lipid droplet phosphatidic acid and restrains overgrowth
Lipid droplets (LDs) are assembled at discrete endoplasmic reticulum (ER) subdomains whose local phospholipid composition, rather than their protein content alone, determines whether a LD nucleates an...
011
Reposted by Álvaro López Codina
Cytoskeleton Journal @cytoskeljournal.bsky.social · 02/10/2026
Have you seen this #openaccess Perspective in #Cytoskeleton? #Microtubule Destabilizing #Kinesins: A Historical Perspective and Thoughts for the Future. Check it out here: onlinelibrary.wiley.com/doi/full/10....
052
Reposted by Álvaro López Codina
Jitu Mayor Lab @jitumayorlab.bsky.social · 14/09/2026
Our latest study about how stratified myosin motors at the plasma membrane drive distinct nanoscale clusters that organize into segregated mesoscale active emulsions is out in Science Advances! Read on to find out more| Science Advances www.science.org/doi/10.1126/...
01910
Reposted by Álvaro López Codina
Michelle Fry @myfry.bsky.social · 02/10/2026
1/ 🧵 Two classic mitochondrial pathways the TCA cycle and OXPHOS are taught as linked but distinct pathways. I’m happy to share our new work out in @cp-cell.bsky.social showing that in Acanthamoeba they're physically linked—with a TCA enzyme incorporated in ATP synthase. www.cell.com/cell/fulltex...
cell.com
Acanthamoeba ATP synthase structure reveals the TCA cycle is tethered to OXPHOS
Acanthamoeba castellanii, a pathogenic amoeba, belongs to an evolutionary branch distinctly removed from humans and fungi. Cryo-EM of the organism’s ATP synthase enzyme using raw mitochondrial lysates...
14219
Reposted by Álvaro López Codina
Alex Noble @alexjamesnoble.bsky.social · 01/10/2026
Particle picking may be cryoEM's most overlooked step. We reprocessed a 49 kDa membrane target (EMPIAR-10330) with Topaz Masterclass methods, resulting in: • 5x particles: 3.2Å ➔ 2.9Å • Improved side-chain densities (Phe106 in vid) Learn how: www.cryoarcana.com/topaz-master...
061
Reposted by Álvaro López Codina
cryoEM papers @cryoempapers.bsky.social · 01/10/2026
Excess p50 induces Arp1-dependent dynactin clusters containing the assembly factor VezA pubmed.ncbi.nlm.nih.gov/42814601/ #cryoEM
011
Reposted by Álvaro López Codina
Robert Arkowitz @robertarkowitz.bsky.social · 01/10/2026
www.science.org/doi/10.1126/...
science.org
PI(3,5)P2 controls the signaling activity of class I PI3K
3-Phosphoinositides are essential cellular lipids regulating health and disease. Among them, phosphatidylinositol-3,5-bisphosphate [PI(3,5)P2] remains the least understood. Using a newly developed rat...
044
Reposted by Álvaro López Codina
cryoEM papers @cryoempapers.bsky.social · 01/10/2026
Gβγ engages PLCβ3 at multiple sites to reorient and facilitate its activation pubmed.ncbi.nlm.nih.gov/42814481/ #cryoEM
021
Reposted by Álvaro López Codina
cryoEM papers @cryoempapers.bsky.social · 01/10/2026
cryoWEight: Conformational ensembles from cryo-EM particle images with weighted ensemble simulations www.biorxiv.org/content/10.64898/2026.09.28.755042v1 #cryoEM
011
Reposted by Álvaro López Codina
Journal of Cell Science @jcellsci.bsky.social · 01/10/2026
A new lamin assembly assay using Xenopus egg extracts Ross Pedersen, Yixian Zheng and colleagues reconstitute lamin assembly on nuclear pore complex-containing membranes. Highlight: journals.biologists.com/jcs/article/... Article: journals.biologists.com/jcs/article/...
Figure showing that lamin-B3 assembly occurs on annulate lamellae in the absence of nuclei.
112
Reposted by Álvaro López Codina
cryoEM papers @cryoempapers.bsky.social · 01/10/2026
Structural mechanism of Gasdermin E-mediated mtDNA release from apoptotic mitochondria www.biorxiv.org/content/10.64898/2026.09.29.755391v1 #cryoEM
062
Reposted by Álvaro López Codina
Nature Structural & Molecular Biology @natsmb.nature.com · 01/10/2026
ICYMI: New online: A phosphoproteome atlas of human cell lines reveals the landscape of kinase activity
dlvr.it
A phosphoproteome atlas of human cell lines reveals the landscape of kinase activity
Nature Structural & Molecular Biology, Published online: 30 September 2026; doi:10.1038/s41594-026-01877-6Koenig et al. present a phosphoproteome atlas of 33 human cell lines covering >200,000 phosphosites, advancing cellular kinase activity scoring and drug sensitivity prediction, providing a resource for cell signaling insights and precision oncology.
022
Reposted by Álvaro López Codina
Nature Structural & Molecular Biology @natsmb.nature.com · 01/10/2026
ICYMI: New online: Mapping functional signaling landscapes across the human phosphoproteome
dlvr.it
Mapping functional signaling landscapes across the human phosphoproteome
Nature Structural & Molecular Biology, Published online: 30 September 2026; doi:10.1038/s41594-026-01898-1Advances in phosphoproteomics enable systems-wide mapping of phosphorylation, but translating these data into functional signaling networks remains challenging. A deep human cell-line phosphoproteome atlas infers kinase activity, enabling systematic network mapping and identification of actionable kinase vulnerabilities for precision therapies.
011
Reposted by Álvaro López Codina
bioRxiv Biochemistry @biorxiv-biochem.bsky.social · 01/10/2026
Cryo-tides: synthetic peptides for cryo-EM grid preparation of multi-subunit protein complexes sensitive to the air-water interface www.biorxiv.org/content/10.64898/20…
043
Reposted by Álvaro López Codina
Claudio Alfieri @claudioalfieri.bsky.social · 01/10/2026
...a lot of people have asked me about our cryo-tides and how they help with preserving particles during cryo-EM grid preparation...and here we go #cryoem: www.biorxiv.org/content/10.6...
biorxiv.org
Cryo-tides: synthetic peptides for cryo-EM grid preparation of multi-subunit protein complexes sensitive to the air-water interface
Cryogenic electron microscopy (cryo-EM) has enabled rapid progress in structural biology throughout the last decade. However, cryo-EM sample preparation still represents a major bottleneck in high-res...
0132
Reposted by Álvaro López Codina
Basil Greber @bjgreber.bsky.social · 01/10/2026
... check out the latest pre-print by @claudioalfieri.bsky.social & his team! www.biorxiv.org/content/10.6...
biorxiv.org
Cryo-tides: synthetic peptides for cryo-EM grid preparation of multi-subunit protein complexes sensitive to the air-water interface
Cryogenic electron microscopy (cryo-EM) has enabled rapid progress in structural biology throughout the last decade. However, cryo-EM sample preparation still represents a major bottleneck in high-res...
1185
Reposted by Álvaro López Codina
Robert Arkowitz @robertarkowitz.bsky.social · 01/10/2026
www.biorxiv.org/content/10.6...
biorxiv.org
Declining ribosome function limits oocyte longevity
Protein synthesis declines with age across many tissues, but whether this decline actively contributes to physiological aging remains unclear. Oocytes may be particularly vulnerable because they rely ...
0125
Reposted by Álvaro López Codina
Cell Biology J-Club @cellclub.bsky.social · 01/10/2026
www.science.org/doi/10.1126/...
science.org
PI(3,5)P2 controls the signaling activity of class I PI3K
3-Phosphoinositides are essential cellular lipids regulating health and disease. Among them, phosphatidylinositol-3,5-bisphosphate [PI(3,5)P2] remains the least understood. Using a newly developed rat...
011
Reposted by Álvaro López Codina
Communications Biology @commsbio.nature.com · 01/10/2026
ChIP-CryoEM is used to resolve CENP-A #nucleosomes isolated from human cells, which are shown to be octameric and to retain hallmark CENP-A features, defining the structural organization of centromere-specifying #chromatin. nature.com/articles/s42003-026-10946-x
nature.com
Cryo-EM structures of CENP-A nucleosomes isolated from human cells - Communications Biology
A study employs ChIP-CryoEM to determine structures of CENP-A nucleosomes isolated from human cells. Homotypic CENPA and heterotypic CENP-A/H3 nucleosomes are octameric and retain hallmark CENP-A stru...
021
Reposted by Álvaro López Codina
Cell Biology J-Club @cellclub.bsky.social · 01/10/2026
Atg39-dependent nucleophagy and Atg40-dependent ER-phagy require the Apq12/Brr6/Brl1 complex | PNAS www.pnas.org/doi/10.1073/...
pnas.org
Atg39-dependent nucleophagy and Atg40-dependent ER-phagy require the Apq12/Brr6/Brl1 complex | PNAS
Autophagic degradation of parts of the nucleus (nucleophagy) and endoplasmic reticulum (ER-phagy) utilizes the selective autophagy receptors, Atg39...
011
Reposted by Álvaro López Codina
bioRxiv Biophysics @biorxiv-biophys.bsky.social · 01/10/2026
cryoWEight: Conformational ensembles from cryo-EM particle images with weighted ensemble simulations www.biorxiv.org/content/10.64898/20…
022
Reposted by Álvaro López Codina
bioRxiv Cell Biology @biorxiv-cellbio.bsky.social · 30/09/2026
Proteasomal surveillance of exposed cysteines www.biorxiv.org/content/10.64898/20…
032
Reposted by Álvaro López Codina
Journal of Cell Biology @jcb.org · 30/09/2026
Abir Elfarkouchi, Arthur Vitard, @francoizochsenbein.bsky.social, @pconduit.bsky.social et al. reveal the first structural model for γ-TuRC CM1 domain autoinhibition, which prevents ectopic binding and activation of #microtubule-nucleating γ-tubulin ring complexes. rupress.org/jcb/article/...
058
Reposted by Álvaro López Codina
Robert Arkowitz @robertarkowitz.bsky.social · 30/09/2026
www.biorxiv.org/content/10.6...
biorxiv.org
Fluorescent proteins misreport ribosome abundance under translation inhibition
Fluorescent proteins are widely used as quantitative reporters of protein abundance in living cells. Here we show that this relationship can break down under translation inhibition: the cellular ribos...
0103
Reposted by Álvaro López Codina
Biophysical Journal @biophysj.bsky.social · 30/09/2026
#OPENACCESS: Role of Hsp70 chaperone in client-protein folding elucidated by Markov state modeling and NMR restraint-assisted molecular dynamics simulations. Michael S. O’Connor, Kirill A. Konovalov, Josephine L. Duvall, Jinoh Jang, Yichong Lao, Silvia Cavagnero, and Xuhui Huang. buff.ly/wsDE2dj
cell.com
Role of Hsp70 chaperone in client-protein folding elucidated by Markov state modeling and NMR restraint-assisted molecular dynamics simulations
Heat shock protein 70 (Hsp70) is a molecular chaperone that plays a key role in cellular processes by assisting protein folding and preventing aggregation. During client-protein folding, Hsp70…
033
Reposted by Álvaro López Codina
André Nadler @nadlerlab.bsky.social · 30/09/2026
This story in @natcellbio.nature.com by the amazing @mathilda95.bsky.social is the final flourish in a series of papers over the last year during which we reported a solution to the lipid imaging problem in biology. Stay tuned for the next chapters!
1389
Reposted by Álvaro López Codina
Susana Nunes @susananunes.bsky.social · 30/09/2026
Super excited to see this story out! Shout out to @mathilda95.bsky.social for her PhD work. I was lucky to have her and @sascha-kuhn.bsky.social as my bachelor's thesis supervisors.They helped me find and grow my excitement for science!Thanks to André @nadlerlab.bsky.social for having me in the lab!
1153
Reposted by Álvaro López Codina
Waggoner Lab @labwaggoner.bsky.social · 30/09/2026
mTORC1-driven metabolic reprogramming in sensory neurons is a form of innate neuroimmune memory underlying allergen cross-sensitization and polysensitization @cp-immunity.bsky.social www.cell.com/immunity/ful... @harvardmed.bsky.social
073
Reposted by Álvaro López Codina
cryoEM papers @cryoempapers.bsky.social · 30/09/2026
Mechanisms of substrate recognition and catalysis in a mammalian phosphatidylserine synthase 2 pubmed.ncbi.nlm.nih.gov/42809401/ #cryoEM
011