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Biophysical Journal

@biophysj.bsky.social
2.8K followers 5 following 699 posts

The premier journal of quantitative biology and leading journal for molecular, cellular, and systems biophysics research. Editor-in-Chief: Vasanthi Jayaraman.

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Biophysical Journal @biophysj.bsky.social · 9h
#OPENACCESS: Role of Hsp70 chaperone in client-protein folding elucidated by Markov state modeling and NMR restraint-assisted molecular dynamics simulations. Michael S. O’Connor, Kirill A. Konovalov, Josephine L. Duvall, Jinoh Jang, Yichong Lao, Silvia Cavagnero, and Xuhui Huang. buff.ly/wsDE2dj
cell.com
Role of Hsp70 chaperone in client-protein folding elucidated by Markov state modeling and NMR restraint-assisted molecular dynamics simulations
Heat shock protein 70 (Hsp70) is a molecular chaperone that plays a key role in cellular processes by assisting protein folding and preventing aggregation. During client-protein folding, Hsp70…
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Biophysical Journal @biophysj.bsky.social · 14h
Special issue call for papers: Genome Organization: Integrating Mathematics, Physics, and Computation for Advances in Biology and Medicine. buff.ly/yn4iIpe
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_GenomeOrganization.pdf#Page=1
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Biophysical Journal @biophysj.bsky.social · 29/09/2026
Special issue call for papers: The Past, Present, and Future of Muscle Biophysics. buff.ly/LDBUW2Z
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_MuscleBiophysics.pdf#Page=1
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Biophysical Journal @biophysj.bsky.social · 29/09/2026
Fibrinogen hits the molecular gym! Ibrahim et al. put this key blood protein through repeated high-strain “workouts” to reveal how it stretches, adapts & responds to cyclic loading. Tiny protein, serious mechanics! buff.ly/hRhae7k
cell.com
Insights into fibrinogen mechanics under cyclic high-strain loading
Fibrinogen plays a central role in the physiological processes of blood coagulation and, unfortunately, ischemic stroke, where it is routinely exposed to mechanical forces. In this study, we employed…
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Biophysical Journal @biophysj.bsky.social · 28/09/2026
#OPENACCESS: Cross-linking mass spectrometry: Workflow enhancements for mapping large-scale interactomes. Shenbaga Moorthy Balakrishnan, Taoufik Nedjadi, Rawiah Alsiary, and Hifzur Rahman Ansari. buff.ly/zqekyMa
cell.com
Cross-linking mass spectrometry: Workflow enhancements for mapping large-scale interactomes
In vivo chemical cross-linking combined with mass spectrometry analysis (XL-MS) enables the direct capture of protein-protein interactions (PPIs) within their native cellular environment. This…
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Biophysical Journal @biophysj.bsky.social · 28/09/2026
Special issue call for papers: Stephen H. White: In Memoriam. buff.ly/LF0EYZp
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_StephenHWhite.pdf#Page=1
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Biophysical Journal @biophysj.bsky.social · 26/09/2026
#OPENACCESS: Different actions of RyR2 open and closed channel block explained by a multiscale Ca2+ release model. Derek R. Laver, James Welsh, Morris Vysma, and Bjorn C. Knollmann. buff.ly/ChjbT3u
cell.com
Different actions of RyR2 open and closed channel block explained by a multiscale Ca2+ release model
RyR2 channels regulate Ca2+ release from the sarcoplasmic reticulum (SR), the Ca storage organelle in cardiac muscle. Altered RyR2 activity is a key factor promoting atrial and ventricular…
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Biophysical Journal @biophysj.bsky.social · 26/09/2026
#OPENACCESS: Protein function-conditioned language models for variant effect prediction and controllable design. Shaowen Zhu, Yue Cao, Yihong Yang, and Yang Shen. buff.ly/Efn95HG
cell.com
Protein function-conditioned language models for variant effect prediction and controllable design
Protein function-conditioned generative modeling can unify two core goals in protein engineering: predicting the effects of sequence variants and designing new sequences that satisfy functional…
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Biophysical Journal @biophysj.bsky.social · 25/09/2026
Special issue call for papers: Biophysics of Membrane Reactions in the Brain. buff.ly/dhLFOVO
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_BiophysicsofMembraneReactions.pdf#Page=1
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Biophysical Journal @biophysj.bsky.social · 25/09/2026
Though driven by capillary forces, theory shows that the underlying physics of a droplet shape recovery and droplet fusion are different, helping interpret rheological properties of biomolecular condensates. buff.ly/s8irK9l
cell.com
Fusion dynamics of viscoelastic droplets: Similarities and differences with shape recovery
Biomolecular condensates formed by phase separation inside cells often exhibit viscoelastic behavior, yet their shape recovery and fusion dynamics are frequently interpreted using purely viscous…
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Biophysical Journal @biophysj.bsky.social · 24/09/2026
#OPENACCESS: Proteome-wide structural and interaction analysis using cross-linking mass spectrometry and its applications. Shenbaga Moorthy Balakrishnan, Hifzur Rahman Ansari, and Taoufik Nedjadi. buff.ly/ovoTRNs
cell.com
Proteome-wide structural and interaction analysis using cross-linking mass spectrometry and its applications
Deciphering the mechanisms of protein-protein interactions (PPIs) and protein structural changes within the native cellular environment is crucial for advancing drug discovery. In vivo chemical…
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Biophysical Journal @biophysj.bsky.social · 24/09/2026
Special issue call for papers: Single-Molecule Approaches to Reveal Structural and Mechanistic Properties of the Genome. buff.ly/Ify9mW4
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_SingleMoleculeApproaches.pdf#Page=1
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Biophysical Journal @biophysj.bsky.social · 23/09/2026
Special issue call for papers: Fifty Years of Protein Dynamics: Celebrating Andy McCammon and the Evolution of Computational Biophysics. buff.ly/JcBPrrO
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_ProteinDynamics.pdf#Page=1
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Biophysical Journal @biophysj.bsky.social · 23/09/2026
#OPENACCESS: Beiter et al. use coarse-grained molecular dynamics simulations to understand how different endophilin subdomains interact with model membranes, revealing how the NBAR domain is recruited to and generates membrane regions with negative Gaussian curvature. buff.ly/KoiILF0
cell.com
Subdomains of endophilin can drive membrane remodeling and facilitate controlled membrane scission
The NBAR-domain-containing protein endophilin, a major player in many endocytic pathways, has offered considerable insight into Bin/amphiphysin/Rvs (BAR)-domain-driven membrane remodeling. However,…
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Biophysical Journal @biophysj.bsky.social · 22/09/2026
#OPENACCESS: Reimagining computational macromolecular modeling: AI-driven approaches. E. Sila Ozdemir, Hyunbum Jang, Ruth Nussinov, Ozlem Keskin, and Attila Gursoy. buff.ly/OeRHLLq
cell.com
Reimagining computational macromolecular modeling: AI-driven approaches
Macromolecules, such as proteins, antibodies, nanobodies, and other affinity binders, play essential roles in therapeutic and diagnostic applications due to their high specificity and functionality.…
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Biophysical Journal @biophysj.bsky.social · 22/09/2026
Special issue call for papers: Genome Organization: Integrating Mathematics, Physics, and Computation for Advances in Biology and Medicine. buff.ly/yn4iIpe
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_GenomeOrganization.pdf#Page=1
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Biophysical Journal @biophysj.bsky.social · 21/09/2026
Special issue call for papers: The Past, Present, and Future of Muscle Biophysics. buff.ly/LDBUW2Z
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_MuscleBiophysics.pdf#Page=1
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Biophysical Journal @biophysj.bsky.social · 21/09/2026
#OPENACCESS: A computational model simulates the complex process of skin wound healing by linking genetic circuits to tissue mechanics – a step forward for improving wound therapies. buff.ly/0KDRwnE
cell.com
Spatio-temporal multiscale cell modeling of skin wound healing
Human skin wound healing is a complex process of tissue pattern formation driven by massive cell migration and regeneration, coordinated through intercellular communication. A multiscale tissue…
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Biophysical Journal @biophysj.bsky.social · 18/09/2026
Give cells different “road markings” and they change how they travel! Zhao et al. explore how 2D adhesion patterns reshape cell morphology and guide migration—showing how the cellular landscape influences movement. buff.ly/5tTIHqL
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Biophysical Journal @biophysj.bsky.social · 18/09/2026
Special issue call for papers: Stephen H. White: In Memoriam. buff.ly/LF0EYZp
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_StephenHWhite.pdf#Page=1
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Biophysical Journal @biophysj.bsky.social · 17/09/2026
Special issue call for papers: Fazly Ataullakhanov: In Memoriam. buff.ly/U2LwrXc
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_FazlyAtaullakhanov.pdf#Page=1
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Biophysical Journal @biophysj.bsky.social · 17/09/2026
#OPENACCESS: Condensates and cell states: A new paradigm for understanding tumor biology. Ruth Nussinov and Hyunbum Jang. buff.ly/yGr4IZT
cell.com
Condensates and cell states: A new paradigm for understanding tumor biology
Traditionally, cells have been classified by their type. Identifying cell types was deemed vital for understanding their biological processes. More recently, cell-type classification has been…
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Biophysical Journal @biophysj.bsky.social · 16/09/2026
Revealing a mechanical role for the bacterial flagellar hook in torque transmission. Das et al. show that the asymmetric torque–speed relationship of the bacterial flagellar motor arises from the rotation-dependent elasticity of the hook and not the motor itself. buff.ly/qC5hl4d
cell.com
Hook stiffness as a mechanical switch for torque regulation in the bacterial flagellar motor
The bacterial flagellar motor drives cell motility by rotating the flagellar filament and converting ion flux into mechanical work. At low counterclockwise (CCW) rotational speeds, the motor operates…
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Biophysical Journal @biophysj.bsky.social · 16/09/2026
Special issue call for papers: Physical Properties of Cells: From Measurement to Medicine, A Tribute to Jochen Guck. buff.ly/9S2GAQl
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_PhysicalPropertiesofCells.pdf#Page=1
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Biophysical Journal @biophysj.bsky.social · 15/09/2026
Read about the cover art for the newly released issue of Biophysical Journal on the BPS Blog: www.biophysics.org/blog/similar...
biophysics.org
Similar Structure, Different Dynamics: The Melbournevirus Nucleosome-Like Particle
Histones provide one of biology’s most familiar solutions to the problem of organizing DNA. In eukaryotes, DNA wraps around histone proteins to form nucleosomes, creating the basic structural unit of ...
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Biophysical Journal @biophysj.bsky.social · 15/09/2026
Biophysical Journal thanks all the reviewers and editors who make our journal possible during #PeerReviewWeek! See all events taking place at peerreviewweek.net. #PRW2026 @PeerRevWeek
peerreviewweek.net
Peer Review Week (PRW) is a global celebration of the vital role peer review plays in ensuring the quality and integrity of research.
Peer Review Week (PRW) is a global celebration of the vital role peer review plays in ensuring the quality and integrity of research.
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Biophysical Journal @biophysj.bsky.social · 14/09/2026
Special issue call for papers: Biophysics of Membrane Reactions in the Brain.https://buff.ly/dhLFOVO
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_BiophysicsofMembraneReactions.pdf#Page=1
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Biophysical Journal @biophysj.bsky.social · 14/09/2026
#OPENACCESS: Actin filament assembly driven by distributive polymerases clustered on membrane surfaces. R. Dyche Mullins, Jane Kondev, and Kristen Skruber. buff.ly/tyZP2F9
cell.com
https://www.cell.com/biophysj/fulltext/S0006-3495(26)00538-2
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Biophysical Journal @biophysj.bsky.social · 14/09/2026
#OPENACCESS: Improved mean squared displacement analysis for anomalous single-particle trajectories. Jakub Ślęzak, Joanna Janczura, Diego Krapf, and Ralf Metzler. buff.ly/riGwM6Z
cell.com
https://www.cell.com/biophysj/fulltext/S0006-3495(26)00489-3
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Biophysical Journal @biophysj.bsky.social · 11/09/2026
The study uses light scattering to quantify the transport rates of small molecules at different layers of three Gram-positive bacteria and highlights that despite differences in structures, the adsorption and transfer properties are strikingly similar in two Gram-classified bacteria. buff.ly/vpRJ0vS
cell.com
https://www.cell.com/biophysj/fulltext/S0006-3495(26)00488-1
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Biophysical Journal @biophysj.bsky.social · 11/09/2026
#OPENACCESS: Coupling between sterol and sphingolipid structure in ordered membrane domains. Israel Juarez-Contreras, Hyesoo Kim, and Itay Budin.https://buff.ly/AF8rVOV
cell.com
https://www.cell.com/biophysj/fulltext/S0006-3495(26)00537-0
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Biophysical Journal @biophysj.bsky.social · 11/09/2026
Special issue call for papers: Foundations of Membrane Biophysics: Dedicated to Wolfgang Helfrich. buff.ly/YZZJe60
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_WolfgangHelfrich.pdf#Page=1
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Biophysical Journal @biophysj.bsky.social · 10/09/2026
Special issue call for papers: Single-Molecule Approaches to Reveal Structural and Mechanistic Properties of the Genome. buff.ly/Ify9mW4
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_SingleMoleculeApproaches.pdf#Page=1
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Biophysical Journal @biophysj.bsky.social · 10/09/2026
#OPENACCESS: New study by Pelletier and colleagues investigates how cytoplasmic crowding affects glycogen organization in Xenopus egg cytoplasm, showing that glycogen can actively reorganize the cytoplasm through phase separation. buff.ly/YfTNnI9
cell.com
https://www.cell.com/biophysj/fulltext/S0006-3495(26)00495-9
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Biophysical Journal @biophysj.bsky.social · 09/09/2026
#OPENACCESS: On the mechanism and voltage sensitivity of voltage-sensitive second harmonic probes: A case study of FM4-64. Zhi Li, Nelson Alonso Correa-Rojas, Saranya Pullanchery, Iwona Swiderska, Arianna Marchioro, and Sylvie Roke. buff.ly/DA015b1
cell.com
https://www.cell.com/biophysj/fulltext/S0006-3495(26)00487-X
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Biophysical Journal @biophysj.bsky.social · 09/09/2026
#OPENACCESS: Recovering membrane interaction kinetics of single molecules from 3D tracking data. Erik Lundin, Ivan L. Volkov, Magnus Johansson. buff.ly/FW1q5iU
cell.com
https://www.cell.com/biophysj/fulltext/S0006-3495(26)00540-0
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Biophysical Journal @biophysj.bsky.social · 09/09/2026
Special issue call for papers: Fifty Years of Protein Dynamics: Celebrating Andy McCammon and the Evolution of Computational Biophysics. buff.ly/JcBPrrO
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_ProteinDynamics.pdf#Page=1
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Biophysical Journal @biophysj.bsky.social · 08/09/2026
Special issue call for papers: Genome Organization: Integrating Mathematics, Physics, and Computation for Advances in Biology and Medicine. buff.ly/yn4iIpe
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_GenomeOrganization.pdf#Page=1
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Biophysical Journal @biophysj.bsky.social · 08/09/2026
#OPENACCESS: Chain collapse, reduced dielectric, and water release drive protein phase separation. Ethan A. Perets, Jacob A. Spies, Justin H. Cheong, Lixue Shi, DeeAnn K. Asamoto, Alex S. Holehouse, Judy E. Kim, Wei Min, Jens Neu, and Elsa C.Y. Yan. buff.ly/oazFKuQ
cell.com
https://www.cell.com/biophysj/fulltext/S0006-3495(26)00499-6
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Biophysical Journal @biophysj.bsky.social · 08/09/2026
The study shows that the protrusions in immune cells that sense extracellular matrix increases oscillations and decreases their depth when matrix stiffness is increased establishing a theoretical framework for understanding a link between interfacial mechanics and podosome dynamics. buff.ly/PQVjEal
cell.com
https://www.cell.com/biophysj/fulltext/S0006-3495(26)00420-0
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Biophysical Journal @biophysj.bsky.social · 04/09/2026
#OPENACCESS: Multi-body fluctuation-induced forces between membrane proteins: Insights from mesoscale simulations. Adrià Bravo Vidal and Weria Pezeshkian. buff.ly/4HmAVnu
cell.com
https://www.cell.com/biophysj/fulltext/S0006-3495(26)00496-0
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Biophysical Journal @biophysj.bsky.social · 04/09/2026
#OPENACCESS: Influence of the presence of tubulin C-terminal tail on kinesin-1’s microtubule binding rate. Agnieszka G. Lipska, Babu Reddy Janakaloti Narayanareddy, et al. buff.ly/OG51bwA
cell.com
https://www.cell.com/biophysj/fulltext/S0006-3495(26)00486-8
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Biophysical Journal @biophysj.bsky.social · 04/09/2026
Special issue call for papers: The Past, Present, and Future of Muscle Biophysics. buff.ly/LDBUW2Z
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_MuscleBiophysics.pdf#Page=1
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Biophysical Journal @biophysj.bsky.social · 03/09/2026
Special issue call for papers: Physical Properties of Cells: From Measurement to Medicine, A Tribute to Jochen Guck buff.ly/9S2GAQl
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_PhysicalPropertiesofCells.pdf#Page=1
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Biophysical Journal @biophysj.bsky.social · 03/09/2026
RBCs hitting a sudden microfluidic expansion are like cars entering a wide-open highway—shape changes get wild at extreme strain rates! Palahnuk et al. probe how cells deform beyond physiological limits. buff.ly/Fm7rWU3
cell.com
Red blood cell deformation in a microfluidic sudden expansion at supraphysiological strain rates
Red blood cell (RBC) deformability is critical for in vivo tissue oxygenation and has been studied in ideal, canonical flows. In vitro frameworks are needed to study RBC deformation in more complex…
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Biophysical Journal @biophysj.bsky.social · 03/09/2026
Cell-size heterogeneity and collective migration: intricately intertwined. Kong et al. show that size heterogeneity acts as a mechanical switch, promoting collective motility in solid-like tissues but suppressing it in fluid-like tissues. buff.ly/yh8BIcY
cell.com
https://www.cell.com/biophysj/fulltext/S0006-3495(26)00517-5
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Biophysical Journal @biophysj.bsky.social · 02/09/2026
#OPENACCESS: Emergent intercellular junction stability during cyclic tissue loading. Eleni Papafilippou, Alessandra Bonfanti, Guillaume Charras, and Alexandre Kabla. buff.ly/xoJqOoy
cell.com
https://www.cell.com/biophysj/fulltext/S0006-3495(26)00480-7
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Biophysical Journal @biophysj.bsky.social · 02/09/2026
Special issue call for papers: Foundations of Membrane Biophysics: Dedicated to Wolfgang Helfrich. buff.ly/YZZJe60
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_WolfgangHelfrich.pdf#Page=1
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Biophysical Journal @biophysj.bsky.social · 01/09/2026
Read about the cover art for the newly released issue of Biophysical Journal on the BPS Blog: www.biophysics.org/blog/capturi...
biophysics.org
Capturing the Rhythm of Podosomes
In our research, we have combined theoretical modeling with confocal fluorescence microscopy to study podosomes, small, actin-rich structures that immune cells use to contact, probe, and remodel the b...
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Biophysical Journal @biophysj.bsky.social · 31/08/2026
Special issue call for papers: Single-Molecule Approaches to Reveal Structural and Mechanistic Properties of the Genome.
biophysics.org
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